Wall clock time and date at job start Mon Mar 30 2020 05:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50707 * 119.99691 * 2 1 4 4 C 1.52997 * 109.47458 * 123.65890 * 3 2 1 5 5 C 1.50699 * 109.53938 * 303.89732 * 4 3 2 6 6 O 1.21280 * 120.00138 * 113.27110 * 5 4 3 7 7 N 1.34778 * 119.99994 * 293.26590 * 5 4 3 8 8 C 1.46499 * 120.00037 * 174.94922 * 7 5 4 9 9 H 1.08995 * 109.46960 * 324.99610 * 8 7 5 10 10 C 1.53000 * 109.47310 * 85.00015 * 8 7 5 11 11 C 1.50709 * 109.47052 * 204.99820 * 8 7 5 12 12 H 1.08002 * 119.99614 * 0.02562 * 11 8 7 13 13 C 1.37869 * 119.99791 * 179.97438 * 11 8 7 14 14 N 1.31510 * 120.00507 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99626 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.47298 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46959 * 120.00397 * 15 13 11 18 18 H 1.48500 * 109.47062 * 239.99884 * 15 13 11 19 19 C 1.53174 * 109.54631 * 183.71834 * 4 3 2 20 20 C 1.53100 * 109.15952 * 183.23867 * 19 4 3 21 21 O 1.42906 * 109.48270 * 57.47484 * 20 19 4 22 22 C 1.42898 * 114.09985 * 298.88584 * 21 20 19 23 23 C 1.53096 * 109.41338 * 61.16169 * 22 21 20 24 24 H 1.08001 * 120.00528 * 359.72446 * 1 2 3 25 25 H 1.08007 * 119.99436 * 179.72968 * 1 2 3 26 26 H 1.08001 * 120.00528 * 180.27554 * 2 1 3 27 27 H 1.09004 * 109.46869 * 243.66212 * 3 2 1 28 28 H 1.08997 * 109.46766 * 3.65314 * 3 2 1 29 29 H 0.97003 * 120.00062 * 354.94556 * 7 5 4 30 30 H 1.09001 * 109.47012 * 180.02562 * 10 8 7 31 31 H 1.09000 * 109.46773 * 299.99654 * 10 8 7 32 32 H 1.08995 * 109.47440 * 59.99888 * 10 8 7 33 33 H 0.96998 * 120.00638 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.52191 * 303.05995 * 19 4 3 35 35 H 1.09002 * 109.51922 * 63.24297 * 19 4 3 36 36 H 1.08997 * 109.40754 * 297.49437 * 20 19 4 37 37 H 1.08997 * 109.49186 * 177.50651 * 20 19 4 38 38 H 1.08998 * 109.48341 * 301.17705 * 22 21 20 39 39 H 1.08998 * 109.49138 * 181.14718 * 22 21 20 40 40 H 1.09000 * 109.52259 * 182.48622 * 23 22 21 41 41 H 1.08998 * 109.57630 * 62.32949 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0108 1.3473 1.2006 5 6 2.2266 1.1318 2.4693 6 8 2.3989 0.1264 3.1254 7 7 1.3338 2.0564 2.8749 8 6 0.4924 1.7980 4.0460 9 1 0.2391 0.7386 4.0847 10 6 1.2521 2.1874 5.3158 11 6 -0.7711 2.6133 3.9466 12 1 -0.9315 3.2590 3.0958 13 6 -1.7227 2.5341 4.9411 14 7 -1.5276 1.7474 5.9768 15 14 -3.2886 3.5453 4.8181 16 1 -3.2655 4.3432 3.5659 17 1 -4.4640 2.6378 4.8048 18 1 -3.3813 4.4581 5.9857 19 6 3.7091 2.7095 1.2549 20 6 4.7137 2.7135 2.4103 21 8 5.6489 1.6477 2.2324 22 6 5.0566 0.3472 2.2225 23 6 4.0675 0.2474 1.0583 24 1 -0.5401 0.9353 0.0045 25 1 -0.5399 -0.9354 -0.0044 26 1 1.8501 -0.9353 -0.0045 27 1 2.6400 1.3919 -0.9210 28 1 1.3569 2.1325 0.0655 29 1 1.2484 2.8930 2.3915 30 1 0.6262 1.9947 6.1871 31 1 2.1659 1.5977 5.3877 32 1 1.5054 3.2468 5.2771 33 1 -2.1973 1.6913 6.6763 34 1 4.2344 2.8872 0.3165 35 1 2.9677 3.4928 1.4124 36 1 4.1827 2.5777 3.3524 37 1 5.2455 3.6648 2.4266 38 1 4.5301 0.1804 3.1622 39 1 5.8353 -0.4061 2.1035 40 1 3.5821 -0.7284 1.0754 41 1 4.5994 0.3732 0.1153 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424624985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:12 Heat of formation + Delta-G solvation = -99.872924 kcal Electronic energy + Delta-G solvation = -21992.731617 eV Core-core repulsion = 18871.697122 eV Total energy + Delta-G solvation = -3121.034495 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.86991 -39.14018 -36.96005 -36.58080 -34.36233 -33.73051 -32.03066 -30.69720 -28.55796 -27.34820 -24.99980 -24.64896 -23.53666 -21.93971 -20.78039 -20.34257 -18.49805 -17.50148 -17.19483 -17.05287 -16.91043 -16.30829 -15.99490 -15.50909 -15.46112 -14.95474 -14.82588 -14.43431 -13.92972 -13.89690 -13.54646 -13.20834 -13.15337 -12.92628 -12.86337 -12.70126 -12.50073 -12.32204 -12.27195 -12.17791 -12.08938 -11.46961 -11.34697 -11.09341 -10.64921 -10.57824 -10.39650 -10.05968 -9.67597 -8.17734 -6.34924 1.40783 1.42754 1.44021 1.55617 1.89876 2.35240 2.64397 2.95497 3.13006 3.52550 3.68912 3.82184 4.04687 4.14836 4.17184 4.28910 4.36696 4.55506 4.65541 4.69456 4.74506 4.79166 4.80864 4.90049 4.90719 5.00391 5.03605 5.08633 5.10771 5.16506 5.23560 5.45244 5.63552 5.69463 5.75025 5.88112 5.92592 6.10986 6.22828 6.73965 7.02312 7.33393 7.61737 8.88698 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022155 B = 0.006310 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.542313 B = 4436.398877 C = 5005.133987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.164 4.164 3 C -0.071 4.071 4 C -0.071 4.071 5 C 0.514 3.486 6 O -0.594 6.594 7 N -0.703 5.703 8 C 0.278 3.722 9 H -0.007 1.007 10 C -0.132 4.132 11 C -0.541 4.541 12 H 0.073 0.927 13 C 0.014 3.986 14 N -0.919 5.919 15 Si 0.969 3.031 16 H -0.258 1.258 17 H -0.285 1.285 18 H -0.280 1.280 19 C -0.138 4.138 20 C 0.053 3.947 21 O -0.392 6.392 22 C 0.050 3.950 23 C -0.122 4.122 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.114 0.886 28 H 0.077 0.923 29 H 0.400 0.600 30 H 0.064 0.936 31 H 0.007 0.993 32 H 0.038 0.962 33 H 0.264 0.736 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.020 0.980 37 H 0.121 0.879 38 H 0.034 0.966 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.348 2.959 -13.683 16.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.182 4.182 3 C -0.109 4.109 4 C -0.074 4.074 5 C 0.301 3.699 6 O -0.476 6.476 7 N -0.351 5.351 8 C 0.174 3.826 9 H 0.011 0.989 10 C -0.191 4.191 11 C -0.579 4.579 12 H 0.091 0.909 13 C -0.186 4.186 14 N -0.557 5.557 15 Si 0.794 3.206 16 H -0.182 1.182 17 H -0.211 1.211 18 H -0.206 1.206 19 C -0.176 4.176 20 C -0.024 4.024 21 O -0.311 6.311 22 C -0.026 4.026 23 C -0.160 4.160 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.127 0.873 27 H 0.132 0.868 28 H 0.096 0.904 29 H 0.235 0.765 30 H 0.083 0.917 31 H 0.026 0.974 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.038 0.962 37 H 0.139 0.861 38 H 0.052 0.948 39 H 0.126 0.874 40 H 0.088 0.912 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.545 2.232 -13.068 16.336 hybrid contribution -1.486 0.196 0.663 1.639 sum 8.058 2.428 -12.406 14.991 Atomic orbital electron populations 1.23919 0.96443 1.01963 1.00875 1.23016 0.95978 0.99127 1.00040 1.20804 0.97481 0.95530 0.97047 1.20940 0.95492 0.98551 0.92417 1.21019 0.79654 0.82503 0.86688 1.90591 1.67733 1.30818 1.58435 1.46226 1.37871 1.19853 1.31138 1.18215 0.87959 0.94583 0.81801 0.98927 1.21881 0.97283 0.98152 1.01744 1.21556 1.02661 1.26475 1.07197 0.90867 1.25780 1.01755 0.96382 0.94634 1.70063 1.36036 1.38992 1.10648 0.85340 0.78437 0.78268 0.78563 1.18177 1.21101 1.20550 1.22312 0.99016 0.94742 1.01518 1.22709 0.91825 0.91539 0.96322 1.87844 1.34414 1.15003 1.93881 1.22745 0.96975 0.84879 0.98023 1.22014 0.95622 0.98273 1.00084 0.88614 0.88759 0.87337 0.86777 0.90446 0.76540 0.91745 0.97403 0.94243 0.92667 0.86900 0.89200 0.96165 0.86144 0.94770 0.87423 0.91181 0.87775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.67 14.32 67.78 0.97 -4.70 16 2 C -0.16 -4.42 8.11 25.65 0.21 -4.21 16 3 C -0.07 -1.60 4.72 29.85 0.14 -1.46 16 4 C -0.07 -1.88 0.44 -52.81 -0.02 -1.91 16 5 C 0.51 19.76 4.14 87.66 0.36 20.12 16 6 O -0.59 -28.34 13.80 -3.03 -0.04 -28.39 16 7 N -0.70 -28.46 4.95 -446.09 -2.21 -30.67 16 8 C 0.28 14.34 2.52 44.25 0.11 14.45 16 9 H -0.01 -0.44 7.65 -2.39 -0.02 -0.46 16 10 C -0.13 -6.77 9.26 71.98 0.67 -6.10 16 11 C -0.54 -28.27 8.73 25.60 0.22 -28.04 16 12 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 13 C 0.01 0.77 5.30 84.65 0.45 1.21 16 14 N -0.92 -52.90 11.32 21.44 0.24 -52.66 16 15 Si 0.97 41.76 29.54 68.60 2.03 43.79 16 16 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 19 C -0.14 -2.95 4.81 30.69 0.15 -2.80 16 20 C 0.05 1.36 6.62 72.02 0.48 1.83 16 21 O -0.39 -11.22 10.77 -148.98 -1.60 -12.83 16 22 C 0.05 1.46 6.56 72.01 0.47 1.93 16 23 C -0.12 -3.11 4.29 30.69 0.13 -2.98 16 24 H 0.10 2.78 7.84 -2.91 -0.02 2.75 16 25 H 0.09 2.65 8.06 -2.91 -0.02 2.63 16 26 H 0.11 2.87 7.07 -2.91 -0.02 2.85 16 27 H 0.11 1.79 8.14 -2.38 -0.02 1.78 16 28 H 0.08 1.70 7.79 -2.39 -0.02 1.68 16 29 H 0.40 13.76 7.41 -92.71 -0.69 13.07 16 30 H 0.06 3.63 6.07 -2.39 -0.01 3.62 16 31 H 0.01 0.36 8.09 -2.39 -0.02 0.34 16 32 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 34 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.09 1.74 7.05 -2.39 -0.02 1.72 16 36 H 0.02 0.65 7.38 -2.39 -0.02 0.64 16 37 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.03 1.27 6.07 -2.39 -0.01 1.26 16 39 H 0.11 2.61 8.14 -2.39 -0.02 2.60 16 40 H 0.07 1.96 6.66 -2.39 -0.02 1.94 16 41 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -67.43 323.54 3.08 -64.36 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.32 Total: 29.04 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 4.34 Total: -12.65 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -1.96 Total: -83.32 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -1.65 Total: -41.21 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -67.43 3.08 -64.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424624985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.514 kcal (2) G-P(sol) polarization free energy of solvation -67.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds