Wall clock time and date at job start Mon Mar 30 2020 05:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.32828 * 2 1 4 4 O 1.44423 * 110.37269 * 122.36569 * 2 1 3 5 5 C 1.44427 * 105.27894 * 159.34676 * 4 2 1 6 6 H 1.08994 * 110.46614 * 78.36708 * 5 4 2 7 7 C 1.52997 * 110.37203 * 200.66085 * 5 4 2 8 8 C 1.54485 * 104.79832 * 319.49066 * 5 4 2 9 9 H 1.08999 * 110.50982 * 142.62440 * 8 5 4 10 10 C 1.53000 * 110.50886 * 265.33093 * 8 5 4 11 11 C 1.54476 * 110.37536 * 237.74673 * 2 1 3 12 12 H 1.08995 * 110.51278 * 335.84004 * 11 2 1 13 13 C 1.50709 * 110.50967 * 98.54524 * 11 2 1 14 14 O 1.21276 * 119.99917 * 34.80626 * 13 11 2 15 15 N 1.34771 * 119.99899 * 214.80403 * 13 11 2 16 16 C 1.47069 * 136.05756 * 4.69300 * 15 13 11 17 17 C 1.53761 * 87.88530 * 152.95990 * 16 15 13 18 18 C 1.50701 * 114.08379 * 139.77852 * 17 16 15 19 19 H 1.08004 * 120.00592 * 266.56115 * 18 17 16 20 20 C 1.37878 * 119.99978 * 86.56276 * 18 17 16 21 21 N 1.31513 * 120.00368 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99954 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46989 * 90.00059 * 22 20 18 24 24 H 1.48501 * 109.47141 * 209.99630 * 22 20 18 25 25 H 1.48496 * 109.47187 * 329.99832 * 22 20 18 26 26 C 1.47071 * 136.05589 * 185.05842 * 15 13 11 27 27 H 1.09003 * 109.47133 * 177.30174 * 1 2 3 28 28 H 1.09000 * 109.46832 * 57.30467 * 1 2 3 29 29 H 1.08994 * 109.47453 * 297.30644 * 1 2 3 30 30 H 1.09005 * 109.46742 * 175.38019 * 7 5 4 31 31 H 1.08999 * 109.47197 * 295.37531 * 7 5 4 32 32 H 1.08994 * 109.47651 * 55.38045 * 7 5 4 33 33 H 1.09004 * 109.47273 * 174.64297 * 10 8 5 34 34 H 1.08996 * 109.47154 * 294.64530 * 10 8 5 35 35 H 1.09006 * 109.47404 * 54.64887 * 10 8 5 36 36 H 1.08999 * 113.46433 * 267.69227 * 16 15 13 37 37 H 1.08994 * 113.46952 * 38.13412 * 16 15 13 38 38 H 1.08995 * 114.39586 * 272.67506 * 17 16 15 39 39 H 0.96993 * 120.00349 * 179.97438 * 21 20 18 40 40 H 1.08997 * 113.46527 * 321.86892 * 26 15 13 41 41 H 1.08999 * 113.46578 * 92.25096 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0328 -0.7248 1.1436 5 6 3.3874 -1.0879 0.7985 6 1 4.0540 -0.2345 0.9223 7 6 3.8601 -2.2610 1.6594 8 6 3.3178 -1.5049 -0.6873 9 1 4.2110 -1.1759 -1.2185 10 6 3.1463 -3.0202 -0.8114 11 6 2.0678 -0.7728 -1.2247 12 1 1.3277 -1.4903 -1.5787 13 6 2.4483 0.1825 -2.3264 14 8 2.9180 1.2668 -2.0535 15 7 2.2666 -0.1682 -3.6150 16 6 1.6714 -1.3083 -4.3283 17 6 1.3841 -0.3530 -5.4984 18 6 1.6289 -0.9550 -6.8581 19 1 2.5852 -0.8238 -7.3427 20 6 0.6320 -1.6733 -7.4836 21 7 -0.5323 -1.8335 -6.8936 22 14 0.9352 -2.4189 -9.1694 23 1 1.4829 -3.7903 -9.0128 24 1 -0.3440 -2.4796 -9.9211 25 1 1.9078 -1.5796 -9.9142 26 6 2.5820 0.4178 -4.9265 27 1 -0.3633 -1.0266 -0.0484 28 1 -0.3633 0.5551 -0.8648 29 1 -0.3634 0.4714 0.9131 30 1 4.8510 -2.5757 1.3321 31 1 3.9038 -1.9510 2.7035 32 1 3.1624 -3.0920 1.5560 33 1 3.0039 -3.2852 -1.8591 34 1 4.0363 -3.5192 -0.4280 35 1 2.2763 -3.3358 -0.2354 36 1 2.3901 -2.0904 -4.5729 37 1 0.7711 -1.6963 -3.8519 38 1 0.4348 0.1773 -5.4241 39 1 -1.2337 -2.3385 -7.3338 40 1 2.4576 1.5001 -4.9596 41 1 3.5413 0.0914 -5.3283 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529515862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:24 Heat of formation + Delta-G solvation = -59.523658 kcal Electronic energy + Delta-G solvation = -21283.891674 eV Core-core repulsion = 18164.606855 eV Total energy + Delta-G solvation = -3119.284819 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.53020 -38.93484 -36.95818 -33.93428 -32.79135 -32.57574 -29.50745 -28.90729 -27.25281 -25.23420 -25.02570 -23.69853 -21.65176 -20.31413 -19.88091 -18.41130 -17.05586 -16.67045 -16.14086 -15.43915 -15.32649 -14.74697 -14.68296 -14.33382 -13.88280 -13.37709 -13.23435 -12.57837 -12.53512 -12.47612 -12.33500 -12.04205 -11.86901 -11.83295 -11.57821 -11.52903 -11.35393 -11.00984 -10.85559 -10.76803 -10.59650 -10.56331 -10.37956 -9.68194 -9.59359 -9.26525 -9.00948 -8.62441 -7.92480 -6.22458 -4.28334 3.01256 3.20711 3.28755 3.31141 3.46558 3.83746 4.29728 4.51850 4.64685 4.80590 4.93461 5.06381 5.12428 5.24064 5.28075 5.36128 5.42871 5.53092 5.53303 5.71838 5.77548 5.83977 5.90164 5.97834 5.99677 6.09655 6.10849 6.14600 6.20149 6.23446 6.25445 6.39573 6.51201 6.59812 6.75301 6.92530 7.50392 7.75120 8.13235 8.45083 8.68614 8.75799 9.38827 10.87269 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028299 B = 0.004592 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.213595 B = 6096.346737 C = 6273.346764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.086 3.914 3 H 0.086 0.914 4 O -0.367 6.367 5 C 0.077 3.923 6 H 0.069 0.931 7 C -0.146 4.146 8 C -0.104 4.104 9 H 0.083 0.917 10 C -0.142 4.142 11 C -0.131 4.131 12 H 0.102 0.898 13 C 0.541 3.459 14 O -0.564 6.564 15 N -0.640 5.640 16 C 0.098 3.902 17 C 0.036 3.964 18 C -0.518 4.518 19 H 0.064 0.936 20 C 0.069 3.931 21 N -0.885 5.885 22 Si 0.895 3.105 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.272 1.272 26 C 0.098 3.902 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.264 0.736 40 H 0.057 0.943 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.732 -2.407 12.316 13.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.028 3.972 3 H 0.103 0.897 4 O -0.287 6.287 5 C 0.019 3.981 6 H 0.087 0.913 7 C -0.203 4.203 8 C -0.123 4.123 9 H 0.102 0.898 10 C -0.199 4.199 11 C -0.153 4.153 12 H 0.120 0.880 13 C 0.330 3.670 14 O -0.445 6.445 15 N -0.372 5.372 16 C -0.025 4.025 17 C 0.017 3.983 18 C -0.556 4.556 19 H 0.082 0.918 20 C -0.134 4.134 21 N -0.522 5.522 22 Si 0.723 3.277 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.197 1.197 26 C -0.024 4.024 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.697 -1.921 12.846 13.812 hybrid contribution 0.214 -0.516 -1.151 1.279 sum 4.912 -2.437 11.695 12.916 Atomic orbital electron populations 1.21815 0.92860 1.02927 1.02680 1.22906 0.95252 0.96044 0.83026 0.89657 1.89095 1.26851 1.74655 1.38095 1.22963 0.85010 0.97180 0.92969 0.91270 1.21879 1.01276 0.97638 0.99531 1.22381 0.97304 0.96548 0.96077 0.89823 1.21894 1.02089 0.93565 1.02374 1.22732 0.99269 0.98060 0.95245 0.88002 1.19747 0.78195 0.87063 0.82014 1.90623 1.47519 1.23599 1.82771 1.50056 1.57789 1.25755 1.03627 1.23695 0.95861 0.90881 0.92014 1.20388 0.93414 0.91844 0.92687 1.20904 0.99615 1.33667 1.01435 0.91828 1.25024 0.94792 0.95820 0.97810 1.69944 1.03842 1.39989 1.38434 0.86538 0.77795 0.79590 0.83795 1.20498 1.21091 1.19667 1.23358 1.00991 0.98666 0.79372 0.91753 0.90935 0.91667 0.91200 0.92166 0.91248 0.92057 0.91972 0.91898 0.90804 0.92196 0.91292 0.92586 0.92421 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.54 37.16 0.35 -1.59 16 2 C 0.09 1.30 3.43 -25.96 -0.09 1.21 16 3 H 0.09 1.43 6.99 -51.93 -0.36 1.07 16 4 O -0.37 -5.41 11.04 -35.23 -0.39 -5.80 16 5 C 0.08 0.98 3.84 -25.95 -0.10 0.88 16 6 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 7 C -0.15 -1.45 8.42 37.16 0.31 -1.14 16 8 C -0.10 -1.42 3.27 -89.05 -0.29 -1.71 16 9 H 0.08 1.21 7.73 -51.93 -0.40 0.81 16 10 C -0.14 -1.64 7.74 37.16 0.29 -1.36 16 11 C -0.13 -2.08 2.63 -90.20 -0.24 -2.31 16 12 H 0.10 1.58 6.93 -51.93 -0.36 1.22 16 13 C 0.54 10.50 6.94 -10.98 -0.08 10.42 16 14 O -0.56 -12.48 16.65 5.56 0.09 -12.38 16 15 N -0.64 -12.85 3.69 -185.03 -0.68 -13.54 16 16 C 0.10 2.01 7.74 -8.36 -0.06 1.94 16 17 C 0.04 0.83 3.80 -91.12 -0.35 0.48 16 18 C -0.52 -12.95 8.82 -34.44 -0.30 -13.25 16 19 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 20 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -23.70 13.26 55.43 0.74 -22.97 16 22 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 C 0.10 2.03 8.18 -8.49 -0.07 1.96 16 27 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.58 7.78 -51.93 -0.40 0.18 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.68 6.58 -51.93 -0.34 0.34 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.60 7.05 -51.93 -0.37 0.23 16 35 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 36 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 37 H 0.06 1.22 7.99 -51.93 -0.42 0.80 16 38 H 0.07 1.74 8.11 -51.93 -0.42 1.32 16 39 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 LS Contribution 331.16 15.07 4.99 4.99 Total: -1.00 -28.13 331.16 -7.79 -35.93 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.80 Total: 1.83 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -0.72 Total: -2.78 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.05 Total: -36.51 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.30 Total: -18.18 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.13 -7.79 -35.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529515862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.598 kcal (2) G-P(sol) polarization free energy of solvation -28.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds