Wall clock time and date at job start Mon Mar 30 2020 05:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.32828 * 2 1 4 4 O 1.44423 * 110.37269 * 122.36569 * 2 1 3 5 5 C 1.44427 * 105.27894 * 159.34676 * 4 2 1 6 6 H 1.08994 * 110.46614 * 78.36708 * 5 4 2 7 7 C 1.52997 * 110.37203 * 200.66085 * 5 4 2 8 8 C 1.54485 * 104.79832 * 319.49066 * 5 4 2 9 9 H 1.08999 * 110.50982 * 142.62440 * 8 5 4 10 10 C 1.53000 * 110.50886 * 265.33093 * 8 5 4 11 11 C 1.54476 * 110.37536 * 237.74673 * 2 1 3 12 12 H 1.08995 * 110.51278 * 335.84004 * 11 2 1 13 13 C 1.50709 * 110.50967 * 98.54524 * 11 2 1 14 14 O 1.21276 * 119.99917 * 34.80626 * 13 11 2 15 15 N 1.34771 * 119.99899 * 214.80403 * 13 11 2 16 16 C 1.47069 * 136.05756 * 4.69300 * 15 13 11 17 17 C 1.53761 * 87.88530 * 152.95990 * 16 15 13 18 18 C 1.50701 * 114.08379 * 139.77852 * 17 16 15 19 19 H 1.08004 * 120.00592 * 266.56115 * 18 17 16 20 20 C 1.37878 * 119.99978 * 86.56276 * 18 17 16 21 21 N 1.31513 * 120.00368 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99954 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46989 * 90.00059 * 22 20 18 24 24 H 1.48501 * 109.47141 * 209.99630 * 22 20 18 25 25 H 1.48496 * 109.47187 * 329.99832 * 22 20 18 26 26 C 1.47071 * 136.05589 * 185.05842 * 15 13 11 27 27 H 1.09003 * 109.47133 * 177.30174 * 1 2 3 28 28 H 1.09000 * 109.46832 * 57.30467 * 1 2 3 29 29 H 1.08994 * 109.47453 * 297.30644 * 1 2 3 30 30 H 1.09005 * 109.46742 * 175.38019 * 7 5 4 31 31 H 1.08999 * 109.47197 * 295.37531 * 7 5 4 32 32 H 1.08994 * 109.47651 * 55.38045 * 7 5 4 33 33 H 1.09004 * 109.47273 * 174.64297 * 10 8 5 34 34 H 1.08996 * 109.47154 * 294.64530 * 10 8 5 35 35 H 1.09006 * 109.47404 * 54.64887 * 10 8 5 36 36 H 1.08999 * 113.46433 * 267.69227 * 16 15 13 37 37 H 1.08994 * 113.46952 * 38.13412 * 16 15 13 38 38 H 1.08995 * 114.39586 * 272.67506 * 17 16 15 39 39 H 0.96993 * 120.00349 * 179.97438 * 21 20 18 40 40 H 1.08997 * 113.46527 * 321.86892 * 26 15 13 41 41 H 1.08999 * 113.46578 * 92.25096 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0328 -0.7248 1.1436 5 6 3.3874 -1.0879 0.7985 6 1 4.0540 -0.2345 0.9223 7 6 3.8601 -2.2610 1.6594 8 6 3.3178 -1.5049 -0.6873 9 1 4.2110 -1.1759 -1.2185 10 6 3.1463 -3.0202 -0.8114 11 6 2.0678 -0.7728 -1.2247 12 1 1.3277 -1.4903 -1.5787 13 6 2.4483 0.1825 -2.3264 14 8 2.9180 1.2668 -2.0535 15 7 2.2666 -0.1682 -3.6150 16 6 1.6714 -1.3083 -4.3283 17 6 1.3841 -0.3530 -5.4984 18 6 1.6289 -0.9550 -6.8581 19 1 2.5852 -0.8238 -7.3427 20 6 0.6320 -1.6733 -7.4836 21 7 -0.5323 -1.8335 -6.8936 22 14 0.9352 -2.4189 -9.1694 23 1 1.4829 -3.7903 -9.0128 24 1 -0.3440 -2.4796 -9.9211 25 1 1.9078 -1.5796 -9.9142 26 6 2.5820 0.4178 -4.9265 27 1 -0.3633 -1.0266 -0.0484 28 1 -0.3633 0.5551 -0.8648 29 1 -0.3634 0.4714 0.9131 30 1 4.8510 -2.5757 1.3321 31 1 3.9038 -1.9510 2.7035 32 1 3.1624 -3.0920 1.5560 33 1 3.0039 -3.2852 -1.8591 34 1 4.0363 -3.5192 -0.4280 35 1 2.2763 -3.3358 -0.2354 36 1 2.3901 -2.0904 -4.5729 37 1 0.7711 -1.6963 -3.8519 38 1 0.4348 0.1773 -5.4241 39 1 -1.2337 -2.3385 -7.3338 40 1 2.4576 1.5001 -4.9596 41 1 3.5413 0.0914 -5.3283 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529515862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:24 Heat of formation + Delta-G solvation = -75.687297 kcal Electronic energy + Delta-G solvation = -21284.592582 eV Core-core repulsion = 18164.606855 eV Total energy + Delta-G solvation = -3119.985727 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.86990 -40.43452 -38.59501 -34.99814 -34.64733 -33.82161 -31.10559 -29.95776 -28.46593 -26.94599 -26.72357 -24.79461 -23.05008 -21.82385 -21.01063 -19.94322 -18.80518 -18.27667 -17.53604 -16.75650 -16.62119 -16.35303 -16.09025 -15.87561 -14.96799 -14.94186 -14.48111 -14.15157 -13.86896 -13.59989 -13.38902 -13.31351 -13.28008 -13.12474 -12.90409 -12.79413 -12.68083 -12.60373 -12.58360 -12.21135 -11.86072 -11.66610 -11.63582 -11.37999 -11.08155 -10.83403 -10.68550 -10.51772 -9.61335 -8.16867 -6.28157 1.46656 1.47703 1.50537 1.59400 1.90424 2.46214 2.71087 3.13355 3.39938 3.42975 3.53991 3.84102 3.95527 4.05966 4.22483 4.25524 4.34002 4.36387 4.41637 4.49893 4.52144 4.59761 4.67244 4.69261 4.79321 4.82108 4.90758 4.91504 4.97790 5.00762 5.04471 5.11840 5.16173 5.20306 5.37095 5.58234 5.80633 5.82026 6.22023 6.80320 6.83177 7.07224 7.42157 8.93118 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028299 B = 0.004592 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.213595 B = 6096.346737 C = 6273.346764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.087 3.913 3 H 0.065 0.935 4 O -0.372 6.372 5 C 0.071 3.929 6 H 0.063 0.937 7 C -0.141 4.141 8 C -0.102 4.102 9 H 0.073 0.927 10 C -0.137 4.137 11 C -0.128 4.128 12 H 0.106 0.894 13 C 0.539 3.461 14 O -0.594 6.594 15 N -0.641 5.641 16 C 0.115 3.885 17 C 0.023 3.977 18 C -0.528 4.528 19 H 0.067 0.933 20 C 0.024 3.976 21 N -0.918 5.918 22 Si 0.957 3.043 23 H -0.272 1.272 24 H -0.288 1.288 25 H -0.267 1.267 26 C 0.103 3.897 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.039 0.961 39 H 0.265 0.735 40 H 0.055 0.945 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.594 -3.948 12.887 14.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.029 3.971 3 H 0.082 0.918 4 O -0.291 6.291 5 C 0.014 3.986 6 H 0.081 0.919 7 C -0.198 4.198 8 C -0.121 4.121 9 H 0.092 0.908 10 C -0.194 4.194 11 C -0.149 4.149 12 H 0.124 0.876 13 C 0.330 3.670 14 O -0.476 6.476 15 N -0.374 5.374 16 C -0.007 4.007 17 C 0.004 3.996 18 C -0.566 4.566 19 H 0.085 0.915 20 C -0.177 4.177 21 N -0.556 5.556 22 Si 0.783 3.217 23 H -0.198 1.198 24 H -0.213 1.213 25 H -0.192 1.192 26 C -0.019 4.019 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.572 -3.465 13.425 14.942 hybrid contribution -0.030 0.051 -1.302 1.304 sum 5.542 -3.414 12.122 13.759 Atomic orbital electron populations 1.21800 0.91539 1.03569 1.03070 1.22825 0.96319 0.94953 0.83036 0.91758 1.89094 1.27826 1.74440 1.37784 1.23145 0.84135 0.98259 0.93060 0.91926 1.21890 1.02267 0.96310 0.99294 1.22433 0.95589 0.97833 0.96289 0.90831 1.21880 1.03524 0.91817 1.02159 1.22776 1.00604 0.97453 0.94101 0.87559 1.20374 0.77274 0.87127 0.82217 1.90606 1.48862 1.25056 1.83116 1.50060 1.57928 1.25484 1.03879 1.23429 0.96056 0.90516 0.90714 1.20270 0.92984 0.93081 0.93258 1.21193 0.99754 1.33403 1.02266 0.91494 1.25737 0.94556 0.96314 1.01090 1.70050 1.04642 1.40976 1.39919 0.85562 0.77464 0.78986 0.79694 1.19772 1.21346 1.19165 1.23260 1.00557 0.98357 0.79740 0.90820 0.91713 0.90283 0.89279 0.91494 0.90718 0.92831 0.89576 0.91369 0.89858 0.92179 0.94289 0.92616 0.92686 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.54 71.98 0.69 -2.99 16 2 C 0.09 2.59 3.43 31.10 0.11 2.70 16 3 H 0.06 2.19 6.99 -2.39 -0.02 2.18 16 4 O -0.37 -10.42 11.04 -148.98 -1.64 -12.06 16 5 C 0.07 1.72 3.84 31.10 0.12 1.84 16 6 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 7 C -0.14 -2.38 8.42 71.98 0.61 -1.78 16 8 C -0.10 -2.63 3.27 -9.78 -0.03 -2.66 16 9 H 0.07 2.05 7.73 -2.39 -0.02 2.03 16 10 C -0.14 -2.81 7.74 71.98 0.56 -2.26 16 11 C -0.13 -3.95 2.63 -10.52 -0.03 -3.98 16 12 H 0.11 3.19 6.93 -2.39 -0.02 3.17 16 13 C 0.54 20.93 6.94 87.66 0.61 21.54 16 14 O -0.59 -26.55 16.65 -3.02 -0.05 -26.60 16 15 N -0.64 -25.68 3.69 -857.69 -3.16 -28.84 16 16 C 0.12 4.69 7.74 83.27 0.64 5.33 16 17 C 0.02 1.09 3.80 -11.12 -0.04 1.05 16 18 C -0.53 -26.27 8.82 25.60 0.23 -26.04 16 19 H 0.07 3.22 7.81 -2.91 -0.02 3.19 16 20 C 0.02 1.19 5.46 84.66 0.46 1.65 16 21 N -0.92 -49.39 13.26 21.45 0.28 -49.11 16 22 Si 0.96 40.01 29.54 68.60 2.03 42.04 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 26 C 0.10 4.26 8.18 83.18 0.68 4.94 16 27 H 0.07 1.75 8.09 -2.39 -0.02 1.73 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 30 H 0.09 1.18 7.78 -2.38 -0.02 1.16 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.21 6.58 -2.39 -0.02 1.19 16 33 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.09 1.36 7.05 -2.39 -0.02 1.35 16 35 H 0.07 1.34 7.45 -2.38 -0.02 1.33 16 36 H 0.08 3.25 8.10 -2.39 -0.02 3.23 16 37 H 0.06 2.43 7.99 -2.39 -0.02 2.41 16 38 H 0.04 2.04 8.11 -2.39 -0.02 2.02 16 39 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 40 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.09 3.34 8.10 -2.39 -0.02 3.32 16 Total: -1.00 -59.43 331.16 3.04 -56.39 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.99 Total: 18.84 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 4.60 Total: -0.66 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -2.88 Total: -77.95 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -1.69 Total: -38.66 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -59.43 3.04 -56.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529515862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.297 kcal (2) G-P(sol) polarization free energy of solvation -59.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds