Wall clock time and date at job start Mon Mar 30 2020 05:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00513 * 2 1 4 4 C 1.50705 * 119.99681 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.46986 * 94.99872 * 4 2 1 6 6 H 1.09005 * 109.47051 * 55.00262 * 5 4 2 7 7 C 1.52999 * 109.47498 * 295.00286 * 5 4 2 8 8 C 1.50694 * 109.47329 * 174.99909 * 5 4 2 9 9 O 1.21289 * 119.99771 * 0.02562 * 8 5 4 10 10 N 1.34772 * 120.00321 * 180.02562 * 8 5 4 11 11 C 1.47419 * 125.65097 * 359.97438 * 10 8 5 12 12 C 1.54908 * 104.83608 * 155.90696 * 11 10 8 13 13 C 1.55160 * 101.58084 * 37.01081 * 12 11 10 14 14 O 1.42897 * 110.71876 * 82.86156 * 13 12 11 15 15 C 1.50696 * 110.71738 * 205.95818 * 13 12 11 16 16 H 1.07996 * 120.00628 * 22.20521 * 15 13 12 17 17 C 1.37877 * 119.99627 * 202.19988 * 15 13 12 18 18 N 1.31510 * 120.00259 * 174.00446 * 17 15 13 19 19 Si 1.86808 * 120.00176 * 354.00268 * 17 15 13 20 20 H 1.48499 * 109.46928 * 86.79030 * 19 17 15 21 21 H 1.48495 * 109.47170 * 206.79332 * 19 17 15 22 22 H 1.48504 * 109.46684 * 326.79327 * 19 17 15 23 23 C 1.47026 * 125.64658 * 180.02562 * 10 8 5 24 24 H 1.07992 * 120.00469 * 180.02562 * 1 2 3 25 25 H 1.08005 * 119.99282 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47179 * 270.00116 * 3 2 1 27 27 H 1.09004 * 109.46840 * 29.99613 * 3 2 1 28 28 H 1.08997 * 109.47349 * 149.99908 * 3 2 1 29 29 H 1.09000 * 109.46775 * 335.00465 * 4 2 1 30 30 H 1.08998 * 109.46959 * 214.99966 * 4 2 1 31 31 H 1.09006 * 109.46993 * 59.99738 * 7 5 4 32 32 H 1.08997 * 109.47303 * 180.02562 * 7 5 4 33 33 H 1.09005 * 109.46950 * 300.00038 * 7 5 4 34 34 H 1.09013 * 110.36219 * 37.06903 * 11 10 8 35 35 H 1.08996 * 110.37159 * 274.75205 * 11 10 8 36 36 H 1.09001 * 111.00154 * 278.93675 * 12 11 10 37 37 H 1.09000 * 111.04026 * 155.10301 * 12 11 10 38 38 H 0.96707 * 114.00035 * 56.23364 * 14 13 12 39 39 H 0.97001 * 120.00437 * 179.97438 * 18 17 15 40 40 H 1.08994 * 109.88453 * 61.60912 * 23 10 8 41 41 H 1.09001 * 109.88338 * 300.43601 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 6 2.4273 -1.6846 -1.4363 6 1 2.9770 -0.8657 -1.9003 7 6 1.1486 -1.9557 -2.2316 8 6 3.2851 -2.9235 -1.4268 9 8 3.5764 -3.4514 -0.3744 10 7 3.7286 -3.4451 -2.5877 11 6 3.4511 -2.9083 -3.9324 12 6 4.6161 -3.4240 -4.8135 13 6 4.8449 -4.8426 -4.2282 14 8 3.9229 -5.7772 -4.7925 15 6 6.2648 -5.2918 -4.4588 16 1 7.0410 -4.5612 -4.6319 17 6 6.5729 -6.6357 -4.4487 18 7 7.7852 -7.0348 -4.7659 19 14 5.2683 -7.8896 -3.9845 20 1 4.4878 -8.2619 -5.1918 21 1 5.9220 -9.0999 -3.4249 22 1 4.3582 -7.3037 -2.9679 23 6 4.5685 -4.6442 -2.7229 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5399 0.9354 -0.0004 26 1 2.2453 1.6197 -1.0277 27 1 1.4745 2.0647 0.5138 28 1 3.0160 1.1747 0.5138 29 1 1.4384 -2.0853 0.4352 30 1 2.9741 -1.1987 0.5900 31 1 0.5282 -1.0595 -2.2384 32 1 1.4079 -2.2265 -3.2551 33 1 0.5989 -2.7747 -1.7676 34 1 3.4447 -1.8183 -3.9118 35 1 2.4986 -3.2870 -4.3030 36 1 5.5034 -2.8029 -4.6908 37 1 4.3205 -3.4767 -5.8614 38 1 3.9491 -5.8213 -5.7582 39 1 8.0021 -7.9802 -4.7584 40 1 4.0425 -5.5120 -2.3251 41 1 5.5081 -4.5008 -2.1893 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592850714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:04 Heat of formation + Delta-G solvation = -75.907848 kcal Electronic energy + Delta-G solvation = -21235.133619 eV Core-core repulsion = 18115.138328 eV Total energy + Delta-G solvation = -3119.995291 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.97796 -37.97382 -36.60168 -34.81517 -32.82399 -32.37619 -30.11704 -28.56637 -27.44148 -27.03880 -25.36500 -23.44713 -21.93642 -19.83850 -18.83194 -18.49998 -17.43177 -16.70732 -15.61501 -15.46897 -15.06325 -15.01955 -14.68130 -14.23767 -13.84744 -13.53439 -13.37236 -13.03596 -12.81450 -12.52212 -12.20430 -12.16682 -11.97318 -11.86028 -11.74935 -11.51842 -11.18067 -11.03423 -10.92524 -10.89171 -10.62193 -10.30148 -10.18539 -9.40799 -9.23835 -9.12035 -8.68323 -8.53890 -8.08998 -6.21615 -4.34570 2.07059 2.99948 3.41031 3.45740 3.55952 3.69052 4.48157 4.56060 4.75593 4.86511 4.93345 5.05126 5.09275 5.16069 5.17361 5.33759 5.37397 5.47962 5.58722 5.63241 5.68921 5.75309 5.78078 5.80475 5.86544 5.97522 6.08789 6.16305 6.17188 6.49820 6.50821 6.57728 6.64104 6.75247 6.77195 7.00252 7.45637 8.00522 8.11246 8.55810 8.60579 8.79863 9.40080 10.87168 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.036696 B = 0.004650 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.851771 B = 6020.253687 C = 6092.621469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 C -0.121 4.121 4 C -0.067 4.067 5 C -0.099 4.099 6 H 0.094 0.906 7 C -0.152 4.152 8 C 0.524 3.476 9 O -0.551 6.551 10 N -0.611 5.611 11 C 0.100 3.900 12 C -0.149 4.149 13 C 0.219 3.781 14 O -0.563 6.563 15 C -0.554 4.554 16 H 0.081 0.919 17 C 0.077 3.923 18 N -0.886 5.886 19 Si 0.942 3.058 20 H -0.289 1.289 21 H -0.322 1.322 22 H -0.268 1.268 23 C 0.113 3.887 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.372 0.628 39 H 0.267 0.733 40 H 0.065 0.935 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.340 13.951 2.823 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.119 4.119 3 C -0.178 4.178 4 C -0.105 4.105 5 C -0.120 4.120 6 H 0.112 0.888 7 C -0.209 4.209 8 C 0.313 3.687 9 O -0.429 6.429 10 N -0.344 5.344 11 C -0.023 4.023 12 C -0.188 4.188 13 C 0.179 3.821 14 O -0.371 6.371 15 C -0.591 4.591 16 H 0.099 0.901 17 C -0.129 4.129 18 N -0.521 5.521 19 Si 0.777 3.223 20 H -0.217 1.217 21 H -0.253 1.253 22 H -0.194 1.194 23 C -0.008 4.008 24 H 0.115 0.885 25 H 0.113 0.887 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.220 0.780 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.207 13.471 4.051 19.295 hybrid contribution -0.375 -0.599 -0.473 0.851 sum -13.582 12.872 3.578 19.051 Atomic orbital electron populations 1.23680 0.95210 1.01670 1.03086 1.21778 0.95430 0.95678 0.98978 1.20888 1.00290 0.94473 1.02125 1.20512 1.00770 0.94107 0.95123 1.21147 0.96892 0.96132 0.97830 0.88837 1.21973 0.96125 1.02397 1.00444 1.20240 0.80330 0.85576 0.82602 1.90674 1.59055 1.62746 1.30427 1.48694 1.50931 1.29137 1.05603 1.22426 0.99169 0.97736 0.82940 1.23417 0.97151 0.99685 0.98520 1.20077 0.88896 0.84819 0.88325 1.86150 1.63253 1.62725 1.24985 1.21184 0.91705 0.93669 1.52512 0.90074 1.25131 0.95962 0.99149 0.92646 1.69956 1.20218 1.16486 1.45462 0.85824 0.79552 0.77749 0.79201 1.21671 1.25333 1.19385 1.22684 0.94036 0.85800 0.98303 0.88473 0.88698 0.91432 0.91995 0.91712 0.90707 0.90381 0.91351 0.91382 0.92354 0.91596 0.91479 0.90263 0.90506 0.78047 0.92342 0.91643 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.81 12.49 29.01 0.36 -1.45 16 2 C -0.12 -1.19 4.79 -101.06 -0.48 -1.67 16 3 C -0.12 -1.02 10.03 36.01 0.36 -0.66 16 4 C -0.07 -0.84 4.21 -27.88 -0.12 -0.96 16 5 C -0.10 -1.29 2.06 -91.78 -0.19 -1.48 16 6 H 0.09 1.09 7.85 -51.93 -0.41 0.68 16 7 C -0.15 -1.71 8.64 37.16 0.32 -1.39 16 8 C 0.52 9.46 7.21 -10.99 -0.08 9.38 16 9 O -0.55 -11.99 16.25 5.55 0.09 -11.90 16 10 N -0.61 -11.33 3.32 -170.52 -0.57 -11.90 16 11 C 0.10 1.50 5.13 -2.53 -0.01 1.49 16 12 C -0.15 -2.56 6.22 -24.58 -0.15 -2.71 16 13 C 0.22 4.75 0.68 -89.93 -0.06 4.69 16 14 O -0.56 -11.83 8.68 -35.23 -0.31 -12.14 16 15 C -0.55 -14.55 8.72 -34.44 -0.30 -14.85 16 16 H 0.08 2.31 7.98 -52.49 -0.42 1.89 16 17 C 0.08 2.13 5.46 -17.82 -0.10 2.03 16 18 N -0.89 -26.25 13.96 55.43 0.77 -25.47 16 19 Si 0.94 23.58 24.94 -169.99 -4.24 19.34 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.32 -8.30 7.11 56.52 0.40 -7.89 16 22 H -0.27 -6.79 5.26 56.52 0.30 -6.49 16 23 C 0.11 2.53 5.72 -3.06 -0.02 2.51 16 24 H 0.10 0.88 7.99 -52.49 -0.42 0.46 16 25 H 0.09 0.73 8.04 -52.48 -0.42 0.31 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.45 8.06 -51.93 -0.42 0.03 16 28 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 29 H 0.07 0.99 7.99 -51.93 -0.41 0.58 16 30 H 0.08 1.05 7.91 -51.93 -0.41 0.64 16 31 H 0.07 0.65 6.52 -51.93 -0.34 0.31 16 32 H 0.07 0.75 4.99 -51.93 -0.26 0.49 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.81 7.36 -51.92 -0.38 0.42 16 35 H 0.07 0.94 7.07 -51.93 -0.37 0.57 16 36 H 0.08 1.40 7.99 -51.93 -0.41 0.98 16 37 H 0.08 1.15 8.12 -51.93 -0.42 0.73 16 38 H 0.37 6.59 9.06 45.56 0.41 7.00 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.07 1.59 6.45 -51.93 -0.33 1.26 16 41 H 0.08 1.94 7.82 -51.93 -0.41 1.54 16 LS Contribution 321.86 15.07 4.85 4.85 Total: -1.00 -31.91 321.86 -5.79 -37.70 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.93 Total: 4.57 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -0.47 Total: -5.06 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.21 Total: -37.37 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.22 Total: -24.03 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -4.24 Total: 19.34 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.91 -5.79 -37.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.205 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds