Wall clock time and date at job start Mon Mar 30 2020 05:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00513 * 2 1 4 4 C 1.50705 * 119.99681 * 179.97438 * 2 1 3 5 5 C 1.52999 * 109.46986 * 94.99872 * 4 2 1 6 6 H 1.09005 * 109.47051 * 55.00262 * 5 4 2 7 7 C 1.52999 * 109.47498 * 295.00286 * 5 4 2 8 8 C 1.50694 * 109.47329 * 174.99909 * 5 4 2 9 9 O 1.21289 * 119.99771 * 0.02562 * 8 5 4 10 10 N 1.34772 * 120.00321 * 180.02562 * 8 5 4 11 11 C 1.47419 * 125.65097 * 359.97438 * 10 8 5 12 12 C 1.54908 * 104.83608 * 155.90696 * 11 10 8 13 13 C 1.55160 * 101.58084 * 37.01081 * 12 11 10 14 14 O 1.42897 * 110.71876 * 82.86156 * 13 12 11 15 15 C 1.50696 * 110.71738 * 205.95818 * 13 12 11 16 16 H 1.07996 * 120.00628 * 22.20521 * 15 13 12 17 17 C 1.37877 * 119.99627 * 202.19988 * 15 13 12 18 18 N 1.31510 * 120.00259 * 174.00446 * 17 15 13 19 19 Si 1.86808 * 120.00176 * 354.00268 * 17 15 13 20 20 H 1.48499 * 109.46928 * 86.79030 * 19 17 15 21 21 H 1.48495 * 109.47170 * 206.79332 * 19 17 15 22 22 H 1.48504 * 109.46684 * 326.79327 * 19 17 15 23 23 C 1.47026 * 125.64658 * 180.02562 * 10 8 5 24 24 H 1.07992 * 120.00469 * 180.02562 * 1 2 3 25 25 H 1.08005 * 119.99282 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47179 * 270.00116 * 3 2 1 27 27 H 1.09004 * 109.46840 * 29.99613 * 3 2 1 28 28 H 1.08997 * 109.47349 * 149.99908 * 3 2 1 29 29 H 1.09000 * 109.46775 * 335.00465 * 4 2 1 30 30 H 1.08998 * 109.46959 * 214.99966 * 4 2 1 31 31 H 1.09006 * 109.46993 * 59.99738 * 7 5 4 32 32 H 1.08997 * 109.47303 * 180.02562 * 7 5 4 33 33 H 1.09005 * 109.46950 * 300.00038 * 7 5 4 34 34 H 1.09013 * 110.36219 * 37.06903 * 11 10 8 35 35 H 1.08996 * 110.37159 * 274.75205 * 11 10 8 36 36 H 1.09001 * 111.00154 * 278.93675 * 12 11 10 37 37 H 1.09000 * 111.04026 * 155.10301 * 12 11 10 38 38 H 0.96707 * 114.00035 * 56.23364 * 14 13 12 39 39 H 0.97001 * 120.00437 * 179.97438 * 18 17 15 40 40 H 1.08994 * 109.88453 * 61.60912 * 23 10 8 41 41 H 1.09001 * 109.88338 * 300.43601 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 6 2.4273 -1.6846 -1.4363 6 1 2.9770 -0.8657 -1.9003 7 6 1.1486 -1.9557 -2.2316 8 6 3.2851 -2.9235 -1.4268 9 8 3.5764 -3.4514 -0.3744 10 7 3.7286 -3.4451 -2.5877 11 6 3.4511 -2.9083 -3.9324 12 6 4.6161 -3.4240 -4.8135 13 6 4.8449 -4.8426 -4.2282 14 8 3.9229 -5.7772 -4.7925 15 6 6.2648 -5.2918 -4.4588 16 1 7.0410 -4.5612 -4.6319 17 6 6.5729 -6.6357 -4.4487 18 7 7.7852 -7.0348 -4.7659 19 14 5.2683 -7.8896 -3.9845 20 1 4.4878 -8.2619 -5.1918 21 1 5.9220 -9.0999 -3.4249 22 1 4.3582 -7.3037 -2.9679 23 6 4.5685 -4.6442 -2.7229 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5399 0.9354 -0.0004 26 1 2.2453 1.6197 -1.0277 27 1 1.4745 2.0647 0.5138 28 1 3.0160 1.1747 0.5138 29 1 1.4384 -2.0853 0.4352 30 1 2.9741 -1.1987 0.5900 31 1 0.5282 -1.0595 -2.2384 32 1 1.4079 -2.2265 -3.2551 33 1 0.5989 -2.7747 -1.7676 34 1 3.4447 -1.8183 -3.9118 35 1 2.4986 -3.2870 -4.3030 36 1 5.5034 -2.8029 -4.6908 37 1 4.3205 -3.4767 -5.8614 38 1 3.9491 -5.8213 -5.7582 39 1 8.0021 -7.9802 -4.7584 40 1 4.0425 -5.5120 -2.3251 41 1 5.5081 -4.5008 -2.1893 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:03 Heat of formation + Delta-G solvation = -99.036542 kcal Electronic energy + Delta-G solvation = -21236.136554 eV Core-core repulsion = 18115.138328 eV Total energy + Delta-G solvation = -3120.998226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.40389 -39.47125 -37.63792 -36.41677 -34.49989 -33.81174 -31.62898 -30.16266 -28.10990 -27.99986 -27.13957 -24.89776 -23.16069 -21.54554 -20.21349 -19.41634 -19.28953 -17.99957 -17.24676 -16.86569 -16.72310 -16.41967 -15.91589 -15.40972 -15.14187 -14.84461 -14.52199 -14.32529 -14.22402 -13.87902 -13.74596 -13.50778 -13.29300 -13.27976 -12.88176 -12.61502 -12.48905 -12.40221 -12.24895 -12.07586 -11.96279 -11.91723 -11.75783 -11.25813 -10.83556 -10.69727 -10.34984 -9.85727 -9.63899 -8.39295 -6.52194 1.33010 1.42149 1.47599 1.59206 1.66829 2.05510 2.38783 2.94230 3.39635 3.54555 3.79261 3.87017 3.93133 4.09195 4.22244 4.26287 4.27849 4.43596 4.47240 4.64704 4.66543 4.81046 4.85878 4.87388 4.90619 4.94549 4.97084 5.10281 5.13824 5.19212 5.23585 5.25496 5.28975 5.33244 5.52569 5.78144 6.03127 6.04680 6.55736 6.59833 7.00862 7.12441 7.28917 8.73642 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.036696 B = 0.004650 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.851771 B = 6020.253687 C = 6092.621469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.129 4.129 3 C -0.120 4.120 4 C -0.065 4.065 5 C -0.087 4.087 6 H 0.118 0.882 7 C -0.146 4.146 8 C 0.516 3.484 9 O -0.599 6.599 10 N -0.614 5.614 11 C 0.103 3.897 12 C -0.140 4.140 13 C 0.217 3.783 14 O -0.565 6.565 15 C -0.547 4.547 16 H 0.050 0.950 17 C 0.030 3.970 18 N -0.933 5.933 19 Si 0.996 3.004 20 H -0.269 1.269 21 H -0.336 1.336 22 H -0.276 1.276 23 C 0.119 3.881 24 H 0.095 0.905 25 H 0.115 0.885 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.388 0.612 39 H 0.267 0.733 40 H 0.038 0.962 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.321 16.345 1.620 23.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.129 4.129 3 C -0.177 4.177 4 C -0.103 4.103 5 C -0.108 4.108 6 H 0.136 0.864 7 C -0.203 4.203 8 C 0.306 3.694 9 O -0.480 6.480 10 N -0.346 5.346 11 C -0.018 4.018 12 C -0.178 4.178 13 C 0.177 3.823 14 O -0.375 6.375 15 C -0.585 4.585 16 H 0.068 0.932 17 C -0.170 4.170 18 N -0.571 5.571 19 Si 0.830 3.170 20 H -0.195 1.195 21 H -0.268 1.268 22 H -0.203 1.203 23 C -0.005 4.005 24 H 0.113 0.887 25 H 0.133 0.867 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.125 0.875 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.126 0.874 38 H 0.238 0.762 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.219 15.898 2.802 22.884 hybrid contribution 0.577 -1.302 -0.047 1.425 sum -15.642 14.596 2.755 21.571 Atomic orbital electron populations 1.23844 0.94846 1.02546 1.01232 1.21683 0.95684 0.94923 1.00629 1.20903 0.99962 0.93857 1.02939 1.20437 1.00023 0.95309 0.94490 1.21186 0.97021 0.93705 0.98872 0.86439 1.21971 0.95014 1.03178 1.00184 1.21311 0.79961 0.86527 0.81563 1.90648 1.60760 1.64396 1.32220 1.48782 1.50313 1.27996 1.07516 1.22687 0.98893 1.00102 0.80132 1.23333 0.98045 0.95871 1.00598 1.19874 0.86415 0.87623 0.88427 1.86081 1.62198 1.62656 1.26596 1.21497 0.93785 0.92743 1.50492 0.93194 1.25800 0.97213 1.01040 0.92995 1.70061 1.22067 1.16799 1.48137 0.84936 0.77430 0.75364 0.79252 1.19453 1.26805 1.20272 1.22234 0.93086 0.86866 0.98302 0.88690 0.86719 0.90336 0.90676 0.92446 0.92334 0.92292 0.88893 0.90476 0.93533 0.87532 0.89275 0.91049 0.87391 0.76154 0.92375 0.94341 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.78 12.49 67.78 0.85 -1.94 16 2 C -0.13 -2.24 4.79 -16.49 -0.08 -2.31 16 3 C -0.12 -1.66 10.03 71.24 0.71 -0.95 16 4 C -0.06 -1.53 4.21 29.85 0.13 -1.41 16 5 C -0.09 -2.05 2.06 -11.54 -0.02 -2.08 16 6 H 0.12 2.26 7.85 -2.38 -0.02 2.24 16 7 C -0.15 -2.73 8.64 71.98 0.62 -2.11 16 8 C 0.52 18.25 7.21 87.66 0.63 18.88 16 9 O -0.60 -26.83 16.25 -3.06 -0.05 -26.88 16 10 N -0.61 -21.96 3.32 -811.79 -2.70 -24.66 16 11 C 0.10 2.68 5.13 86.86 0.45 3.12 16 12 C -0.14 -4.40 6.22 31.99 0.20 -4.20 16 13 C 0.22 9.22 0.68 -10.35 -0.01 9.21 16 14 O -0.57 -22.51 8.68 -148.98 -1.29 -23.81 16 15 C -0.55 -29.26 8.72 25.60 0.22 -29.04 16 16 H 0.05 2.93 7.98 -2.91 -0.02 2.91 16 17 C 0.03 1.70 5.46 84.66 0.46 2.16 16 18 N -0.93 -56.86 13.96 21.45 0.30 -56.56 16 19 Si 1.00 49.32 24.94 68.60 1.71 51.03 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.34 -17.23 7.11 99.48 0.71 -16.53 16 22 H -0.28 -13.96 5.26 99.48 0.52 -13.43 16 23 C 0.12 5.35 5.72 86.73 0.50 5.85 16 24 H 0.09 1.45 7.99 -2.91 -0.02 1.43 16 25 H 0.11 1.28 8.04 -2.91 -0.02 1.26 16 26 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 0.84 8.06 -2.38 -0.02 0.82 16 28 H 0.06 0.87 8.08 -2.39 -0.02 0.85 16 29 H 0.06 1.55 7.99 -2.39 -0.02 1.53 16 30 H 0.06 1.60 7.91 -2.39 -0.02 1.58 16 31 H 0.09 1.32 6.52 -2.38 -0.02 1.30 16 32 H 0.08 1.31 4.99 -2.39 -0.01 1.30 16 33 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.11 1.99 7.36 -2.38 -0.02 1.98 16 35 H 0.09 2.02 7.07 -2.39 -0.02 2.00 16 36 H 0.07 2.37 7.99 -2.39 -0.02 2.35 16 37 H 0.11 2.74 8.12 -2.39 -0.02 2.72 16 38 H 0.39 12.54 9.06 -74.05 -0.67 11.87 16 39 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 40 H 0.04 1.92 6.45 -2.39 -0.02 1.90 16 41 H 0.05 2.48 7.82 -2.39 -0.02 2.46 16 Total: -1.00 -72.90 321.86 2.79 -70.12 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.16 Total: 15.56 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 4.66 Total: -4.80 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -2.40 Total: -81.22 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -1.34 Total: -50.68 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 1.71 Total: 51.03 kcal Total: -72.90 2.79 -70.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.920 kcal (2) G-P(sol) polarization free energy of solvation -72.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds