Wall clock time and date at job start Mon Mar 30 2020 05:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 117.00165 * 2 1 4 4 O 1.20825 * 119.99605 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00455 * 180.02562 * 3 2 1 6 6 H 1.08999 * 115.56630 * 148.04017 * 5 3 2 7 7 C 1.53004 * 117.49732 * 2.35331 * 5 3 2 8 8 C 1.53000 * 117.49780 * 293.73273 * 5 3 2 9 9 H 1.09005 * 117.51818 * 214.97166 * 8 5 3 10 10 C 1.53001 * 117.50122 * 359.97438 * 8 5 3 11 11 H 1.09007 * 109.46566 * 2.04766 * 10 8 5 12 12 C 1.52995 * 109.47323 * 242.05169 * 10 8 5 13 13 N 1.46894 * 109.47372 * 122.04481 * 10 8 5 14 14 C 1.46905 * 111.00267 * 205.00303 * 13 10 8 15 15 C 1.53001 * 109.46991 * 178.34627 * 14 13 10 16 16 C 1.50697 * 115.55371 * 65.92687 * 15 14 13 17 17 H 1.08003 * 120.00053 * 265.68231 * 16 15 14 18 18 C 1.37873 * 119.99994 * 85.67442 * 16 15 14 19 19 N 1.31519 * 120.00150 * 358.15975 * 18 16 15 20 20 Si 1.86805 * 120.00135 * 178.16365 * 18 16 15 21 21 H 1.48501 * 109.47223 * 89.99816 * 20 18 16 22 22 H 1.48503 * 109.46990 * 210.00260 * 20 18 16 23 23 H 1.48498 * 109.46842 * 329.99828 * 20 18 16 24 24 C 1.53003 * 117.49807 * 280.25190 * 15 14 13 25 25 C 1.53002 * 117.49482 * 211.59600 * 15 14 13 26 26 H 1.09005 * 109.46394 * 299.99507 * 1 2 3 27 27 H 1.08990 * 109.47353 * 59.99578 * 1 2 3 28 28 H 1.09000 * 109.46719 * 179.97438 * 1 2 3 29 29 H 1.09000 * 117.50077 * 145.02259 * 7 5 3 30 30 H 1.08998 * 117.49748 * 359.97438 * 7 5 3 31 31 H 1.08996 * 109.47645 * 55.35147 * 12 10 8 32 32 H 1.09004 * 109.47491 * 175.36025 * 12 10 8 33 33 H 1.09007 * 109.46613 * 295.35062 * 12 10 8 34 34 H 1.00899 * 110.99914 * 328.95988 * 13 10 8 35 35 H 1.09001 * 109.47057 * 298.34426 * 14 13 10 36 36 H 1.09004 * 109.46796 * 58.34480 * 14 13 10 37 37 H 0.96995 * 119.99964 * 179.97438 * 19 18 16 38 38 H 1.09000 * 117.49813 * 0.02562 * 24 15 14 39 39 H 1.09005 * 117.49518 * 145.02138 * 24 15 14 40 40 H 1.09001 * 117.49669 * 214.97670 * 25 15 14 41 41 H 1.08998 * 117.49780 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9922 2.1328 -0.5210 7 6 4.3428 -0.0422 -0.0569 8 6 4.3009 0.7662 1.2414 9 1 5.2101 1.2892 1.5383 10 6 3.4514 0.2169 2.3892 11 1 2.3986 0.2459 2.1081 12 6 3.6691 1.0716 3.6393 13 7 3.8452 -1.1702 2.6696 14 6 2.7431 -1.9146 3.2936 15 6 3.1764 -3.3625 3.5323 16 6 4.2825 -3.5526 4.5380 17 1 5.3088 -3.6134 4.2070 18 6 3.9843 -3.6489 5.8806 19 7 2.7384 -3.5386 6.2872 20 14 5.3500 -3.9360 7.1225 21 1 5.8788 -2.6287 7.5878 22 1 4.8138 -4.6940 8.2814 23 1 6.4429 -4.7136 6.4853 24 6 3.1354 -4.3181 2.3381 25 6 2.0973 -4.4444 3.4559 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8898 28 1 -0.3633 -1.0277 -0.0005 29 1 5.2794 -0.0509 -0.6144 30 1 3.7651 -0.9658 -0.0931 31 1 3.4554 2.1150 3.4079 32 1 3.0032 0.7315 4.4325 33 1 4.7040 0.9769 3.9684 34 1 4.1644 -1.6320 1.8311 35 1 2.4848 -1.4510 4.2457 36 1 1.8751 -1.8990 2.6345 37 1 2.5287 -3.6067 7.2317 38 1 2.8002 -3.9152 1.3824 39 1 3.9083 -5.0846 2.2801 40 1 2.1877 -5.2940 4.1328 41 1 1.0787 -4.1247 3.2361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594935108.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:02 Heat of formation + Delta-G solvation = -37.813746 kcal Electronic energy + Delta-G solvation = -21272.027333 eV Core-core repulsion = 18153.683926 eV Total energy + Delta-G solvation = -3118.343407 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.74028 -38.23338 -36.67238 -36.43939 -33.97690 -31.79063 -29.61572 -28.03043 -25.75655 -24.93850 -24.14992 -22.75138 -21.09038 -20.83433 -19.58336 -18.91791 -17.34674 -16.94966 -16.57474 -15.87758 -15.33686 -14.81662 -14.40907 -14.21120 -13.79155 -13.36063 -13.24642 -13.07981 -12.68605 -12.21045 -12.07485 -11.86211 -11.64028 -11.53723 -11.15605 -10.89145 -10.86928 -10.77490 -10.72572 -10.58400 -10.40466 -10.36620 -10.10349 -10.06560 -9.33304 -8.79037 -8.31626 -8.01383 -7.50659 -5.91071 -3.93530 2.01897 2.66058 3.37210 3.43473 3.46821 3.63736 4.36879 4.43797 4.51169 4.73772 5.01501 5.07794 5.09655 5.13789 5.26940 5.39574 5.46851 5.48712 5.52155 5.69403 5.79128 5.90398 6.11065 6.17156 6.23290 6.32089 6.36067 6.42523 6.56554 6.65756 6.73313 6.78215 6.96440 7.17604 7.53786 7.63130 7.69227 7.99402 8.01607 8.23506 8.59730 9.05790 9.69872 11.18498 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023278 B = 0.005434 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.569800 B = 5151.212482 C = 5585.514498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.352 6.352 3 C 0.495 3.505 4 O -0.512 6.512 5 C -0.172 4.172 6 H 0.144 0.856 7 C -0.152 4.152 8 C -0.109 4.109 9 H 0.125 0.875 10 C 0.106 3.894 11 H 0.036 0.964 12 C -0.136 4.136 13 N -0.659 5.659 14 C 0.110 3.890 15 C 0.050 3.950 16 C -0.468 4.468 17 H 0.059 0.941 18 C 0.067 3.933 19 N -0.887 5.887 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.275 1.275 24 C -0.216 4.216 25 C -0.155 4.155 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.333 0.667 35 H 0.073 0.927 36 H -0.005 1.005 37 H 0.256 0.744 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.569 7.496 -12.115 14.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.268 6.268 3 C 0.339 3.661 4 O -0.401 6.401 5 C -0.191 4.191 6 H 0.161 0.839 7 C -0.189 4.189 8 C -0.127 4.127 9 H 0.143 0.857 10 C -0.004 4.004 11 H 0.053 0.947 12 C -0.194 4.194 13 N -0.291 5.291 14 C -0.019 4.019 15 C 0.050 3.950 16 C -0.506 4.506 17 H 0.077 0.923 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.200 1.200 24 C -0.254 4.254 25 C -0.193 4.193 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.152 0.848 35 H 0.091 0.909 36 H 0.013 0.987 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.627 7.925 -11.327 13.839 hybrid contribution -0.261 -0.130 -0.035 0.294 sum -0.888 7.795 -11.362 13.808 Atomic orbital electron populations 1.23277 0.76179 1.03947 1.02350 1.86539 1.23464 1.33135 1.83672 1.22610 0.90534 0.81304 0.71618 1.90648 1.66943 1.36540 1.45929 1.22245 0.86813 1.02144 1.07892 0.83880 1.23130 1.01604 0.93980 1.00181 1.22796 1.00102 1.01402 0.88421 0.85697 1.21183 0.95035 0.91361 0.92780 0.94665 1.21762 1.03162 0.97201 0.97281 1.60441 1.37622 0.99720 1.31306 1.21578 0.88278 0.95030 0.97013 1.18837 0.96544 0.86236 0.93417 1.20310 0.91838 1.48652 0.89830 0.92298 1.24937 0.95144 0.95168 0.98237 1.70009 1.17261 1.50280 1.14961 0.86657 0.82450 0.78138 0.81053 1.20771 1.21587 1.20038 1.22998 1.03423 1.06214 0.92743 1.22488 0.92703 1.03953 1.00178 0.91815 0.92042 0.87896 0.87227 0.87114 0.93531 0.92267 0.91521 0.84777 0.90882 0.98701 0.93383 0.92213 0.90571 0.89983 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.35 -4.90 8.82 -39.26 -0.35 -5.25 16 3 C 0.50 7.10 6.26 36.00 0.23 7.33 16 4 O -0.51 -8.53 16.85 -18.75 -0.32 -8.84 16 5 C -0.17 -2.00 6.27 -91.77 -0.58 -2.57 16 6 H 0.14 1.36 8.14 -51.93 -0.42 0.94 16 7 C -0.15 -1.65 8.92 -26.73 -0.24 -1.89 16 8 C -0.11 -1.36 5.40 -90.62 -0.49 -1.85 16 9 H 0.13 1.38 8.06 -51.93 -0.42 0.96 16 10 C 0.11 1.70 2.73 -67.72 -0.18 1.52 16 11 H 0.04 0.61 5.27 -51.93 -0.27 0.34 16 12 C -0.14 -2.18 9.34 37.16 0.35 -1.83 16 13 N -0.66 -12.43 6.24 -106.72 -0.67 -13.09 16 14 C 0.11 2.41 5.33 -3.82 -0.02 2.39 16 15 C 0.05 1.21 1.52 -155.66 -0.24 0.97 16 16 C -0.47 -12.61 8.76 -34.44 -0.30 -12.91 16 17 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 18 C 0.07 1.83 5.41 -17.82 -0.10 1.73 16 19 N -0.89 -25.15 12.77 55.43 0.71 -24.44 16 20 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.22 -4.62 9.96 -26.69 -0.27 -4.89 16 25 C -0.16 -3.63 9.27 -26.69 -0.25 -3.88 16 26 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 27 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 28 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.11 1.35 6.96 -51.93 -0.36 0.99 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.05 7.61 -51.93 -0.39 0.66 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.33 5.93 6.88 -39.29 -0.27 5.66 16 35 H 0.07 1.82 7.57 -51.93 -0.39 1.43 16 36 H -0.01 -0.11 7.96 -51.93 -0.41 -0.52 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 40 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 341.23 15.07 5.14 5.14 Total: -1.00 -30.18 341.23 -8.24 -38.41 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.72 Total: 6.13 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -1.02 Total: -14.41 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.04 Total: -37.54 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.66 Total: -14.09 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.18 -8.24 -38.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594935108.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.599 kcal (2) G-P(sol) polarization free energy of solvation -30.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds