Wall clock time and date at job start Mon Mar 30 2020 05:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 117.00165 * 2 1 4 4 O 1.20825 * 119.99605 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00455 * 180.02562 * 3 2 1 6 6 H 1.08999 * 115.56630 * 148.04017 * 5 3 2 7 7 C 1.53004 * 117.49732 * 2.35331 * 5 3 2 8 8 C 1.53000 * 117.49780 * 293.73273 * 5 3 2 9 9 H 1.09005 * 117.51818 * 214.97166 * 8 5 3 10 10 C 1.53001 * 117.50122 * 359.97438 * 8 5 3 11 11 H 1.09007 * 109.46566 * 2.04766 * 10 8 5 12 12 C 1.52995 * 109.47323 * 242.05169 * 10 8 5 13 13 N 1.46894 * 109.47372 * 122.04481 * 10 8 5 14 14 C 1.46905 * 111.00267 * 205.00303 * 13 10 8 15 15 C 1.53001 * 109.46991 * 178.34627 * 14 13 10 16 16 C 1.50697 * 115.55371 * 65.92687 * 15 14 13 17 17 H 1.08003 * 120.00053 * 265.68231 * 16 15 14 18 18 C 1.37873 * 119.99994 * 85.67442 * 16 15 14 19 19 N 1.31519 * 120.00150 * 358.15975 * 18 16 15 20 20 Si 1.86805 * 120.00135 * 178.16365 * 18 16 15 21 21 H 1.48501 * 109.47223 * 89.99816 * 20 18 16 22 22 H 1.48503 * 109.46990 * 210.00260 * 20 18 16 23 23 H 1.48498 * 109.46842 * 329.99828 * 20 18 16 24 24 C 1.53003 * 117.49807 * 280.25190 * 15 14 13 25 25 C 1.53002 * 117.49482 * 211.59600 * 15 14 13 26 26 H 1.09005 * 109.46394 * 299.99507 * 1 2 3 27 27 H 1.08990 * 109.47353 * 59.99578 * 1 2 3 28 28 H 1.09000 * 109.46719 * 179.97438 * 1 2 3 29 29 H 1.09000 * 117.50077 * 145.02259 * 7 5 3 30 30 H 1.08998 * 117.49748 * 359.97438 * 7 5 3 31 31 H 1.08996 * 109.47645 * 55.35147 * 12 10 8 32 32 H 1.09004 * 109.47491 * 175.36025 * 12 10 8 33 33 H 1.09007 * 109.46613 * 295.35062 * 12 10 8 34 34 H 1.00899 * 110.99914 * 328.95988 * 13 10 8 35 35 H 1.09001 * 109.47057 * 298.34426 * 14 13 10 36 36 H 1.09004 * 109.46796 * 58.34480 * 14 13 10 37 37 H 0.96995 * 119.99964 * 179.97438 * 19 18 16 38 38 H 1.09000 * 117.49813 * 0.02562 * 24 15 14 39 39 H 1.09005 * 117.49518 * 145.02138 * 24 15 14 40 40 H 1.09001 * 117.49669 * 214.97670 * 25 15 14 41 41 H 1.08998 * 117.49780 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9922 2.1328 -0.5210 7 6 4.3428 -0.0422 -0.0569 8 6 4.3009 0.7662 1.2414 9 1 5.2101 1.2892 1.5383 10 6 3.4514 0.2169 2.3892 11 1 2.3986 0.2459 2.1081 12 6 3.6691 1.0716 3.6393 13 7 3.8452 -1.1702 2.6696 14 6 2.7431 -1.9146 3.2936 15 6 3.1764 -3.3625 3.5323 16 6 4.2825 -3.5526 4.5380 17 1 5.3088 -3.6134 4.2070 18 6 3.9843 -3.6489 5.8806 19 7 2.7384 -3.5386 6.2872 20 14 5.3500 -3.9360 7.1225 21 1 5.8788 -2.6287 7.5878 22 1 4.8138 -4.6940 8.2814 23 1 6.4429 -4.7136 6.4853 24 6 3.1354 -4.3181 2.3381 25 6 2.0973 -4.4444 3.4559 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8898 28 1 -0.3633 -1.0277 -0.0005 29 1 5.2794 -0.0509 -0.6144 30 1 3.7651 -0.9658 -0.0931 31 1 3.4554 2.1150 3.4079 32 1 3.0032 0.7315 4.4325 33 1 4.7040 0.9769 3.9684 34 1 4.1644 -1.6320 1.8311 35 1 2.4848 -1.4510 4.2457 36 1 1.8751 -1.8990 2.6345 37 1 2.5287 -3.6067 7.2317 38 1 2.8002 -3.9152 1.3824 39 1 3.9083 -5.0846 2.2801 40 1 2.1877 -5.2940 4.1328 41 1 1.0787 -4.1247 3.2361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594935108.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:02 Heat of formation + Delta-G solvation = -55.130973 kcal Electronic energy + Delta-G solvation = -21272.778264 eV Core-core repulsion = 18153.683926 eV Total energy + Delta-G solvation = -3119.094338 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.80820 -39.48326 -38.27028 -37.57482 -35.35861 -33.85576 -31.04527 -28.97898 -27.67665 -26.46113 -25.32618 -23.95315 -22.84213 -21.92052 -21.01347 -20.54736 -18.45395 -18.26652 -17.75084 -17.48883 -16.65903 -16.35186 -15.98735 -15.62365 -15.21995 -14.93362 -14.56392 -14.31090 -14.03262 -13.64818 -13.32198 -13.15904 -13.07693 -12.93390 -12.80403 -12.72093 -12.48487 -12.30472 -12.02145 -11.91346 -11.80844 -11.76096 -11.47628 -11.19128 -11.07344 -10.74423 -10.32302 -9.87485 -9.03729 -8.00045 -6.07171 0.94684 1.45005 1.46616 1.55141 1.71104 2.50294 2.68641 3.25883 3.30452 3.46198 3.59756 3.78690 3.89416 4.05196 4.16952 4.19843 4.24495 4.39942 4.43740 4.59052 4.62755 4.63742 4.74967 4.80969 4.85492 4.91791 4.94436 5.03822 5.08218 5.17415 5.20077 5.30738 5.33182 5.41362 5.69162 5.78159 5.91683 6.38045 6.55066 6.62499 6.82564 6.97275 7.58642 9.08750 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023278 B = 0.005434 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.569800 B = 5151.212482 C = 5585.514498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.490 3.510 4 O -0.543 6.543 5 C -0.165 4.165 6 H 0.170 0.830 7 C -0.136 4.136 8 C -0.117 4.117 9 H 0.146 0.854 10 C 0.106 3.894 11 H 0.022 0.978 12 C -0.133 4.133 13 N -0.664 5.664 14 C 0.129 3.871 15 C 0.024 3.976 16 C -0.476 4.476 17 H 0.051 0.949 18 C 0.020 3.980 19 N -0.915 5.915 20 Si 0.945 3.055 21 H -0.281 1.281 22 H -0.290 1.290 23 H -0.269 1.269 24 C -0.184 4.184 25 C -0.166 4.166 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.123 0.877 29 H 0.142 0.858 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.029 0.971 33 H 0.065 0.935 34 H 0.342 0.658 35 H 0.034 0.966 36 H 0.000 1.000 37 H 0.254 0.746 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.888 7.852 -13.887 15.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.335 3.665 4 O -0.433 6.433 5 C -0.184 4.184 6 H 0.187 0.813 7 C -0.173 4.173 8 C -0.136 4.136 9 H 0.163 0.837 10 C -0.003 4.003 11 H 0.040 0.960 12 C -0.191 4.191 13 N -0.296 5.296 14 C -0.001 4.001 15 C 0.024 3.976 16 C -0.515 4.515 17 H 0.069 0.931 18 C -0.179 4.179 19 N -0.555 5.555 20 Si 0.772 3.228 21 H -0.207 1.207 22 H -0.216 1.216 23 H -0.193 1.193 24 C -0.221 4.221 25 C -0.204 4.204 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.141 0.859 29 H 0.160 0.840 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.162 0.838 35 H 0.052 0.948 36 H 0.018 0.982 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.844 8.267 -13.115 15.527 hybrid contribution -0.761 -0.255 0.497 0.944 sum 0.083 8.013 -12.618 14.948 Atomic orbital electron populations 1.23484 0.75172 1.05340 1.02428 1.86532 1.24673 1.33167 1.83370 1.23212 0.91693 0.80914 0.70659 1.90631 1.67852 1.37389 1.47445 1.22377 0.85009 1.03764 1.07297 0.81263 1.23252 1.02459 0.92958 0.98652 1.22702 1.00343 1.02832 0.87700 0.83656 1.21166 0.95188 0.89788 0.94193 0.95991 1.21735 1.02267 0.98472 0.96628 1.60319 1.36523 1.00887 1.31893 1.21159 0.89422 0.93893 0.95600 1.18932 0.96341 0.87557 0.94787 1.20568 0.92268 1.47907 0.90710 0.93059 1.25593 0.96951 0.95366 0.99975 1.70121 1.18829 1.51547 1.14986 0.85764 0.80187 0.77912 0.78949 1.20690 1.21593 1.19308 1.22972 1.01798 1.04482 0.92871 1.22397 0.93587 1.03109 1.01294 0.92832 0.90927 0.85905 0.83973 0.88310 0.91388 0.95171 0.91627 0.83841 0.94754 0.98164 0.93686 0.89258 0.90433 0.92508 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.56 113.37 1.20 1.83 16 2 O -0.36 -9.61 8.82 -51.43 -0.45 -10.07 16 3 C 0.49 13.31 6.26 71.23 0.45 13.76 16 4 O -0.54 -17.62 16.85 21.97 0.37 -17.25 16 5 C -0.17 -3.36 6.27 -11.54 -0.07 -3.43 16 6 H 0.17 2.55 8.14 -2.39 -0.02 2.53 16 7 C -0.14 -2.48 8.92 30.60 0.27 -2.20 16 8 C -0.12 -2.60 5.40 -10.79 -0.06 -2.66 16 9 H 0.15 2.67 8.06 -2.38 -0.02 2.65 16 10 C 0.11 3.29 2.73 44.92 0.12 3.41 16 11 H 0.02 0.75 5.27 -2.38 -0.01 0.74 16 12 C -0.13 -4.22 9.34 71.98 0.67 -3.55 16 13 N -0.66 -24.43 6.24 -491.56 -3.07 -27.50 16 14 C 0.13 5.68 5.33 86.30 0.46 6.14 16 15 C 0.02 1.17 1.52 -52.93 -0.08 1.09 16 16 C -0.48 -25.70 8.76 25.60 0.22 -25.48 16 17 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 18 C 0.02 1.08 5.41 84.65 0.46 1.54 16 19 N -0.92 -53.02 12.77 21.45 0.27 -52.75 16 20 Si 0.94 44.16 29.54 68.60 2.03 46.19 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 22 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 24 C -0.18 -7.53 9.96 30.62 0.30 -7.22 16 25 C -0.17 -7.75 9.27 30.62 0.28 -7.47 16 26 H 0.05 1.26 8.13 -2.38 -0.02 1.24 16 27 H 0.07 1.40 8.13 -2.39 -0.02 1.38 16 28 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.14 1.70 8.14 -2.39 -0.02 1.69 16 30 H 0.10 2.09 6.96 -2.39 -0.02 2.08 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.03 1.10 7.61 -2.38 -0.02 1.08 16 33 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.34 11.47 6.88 -89.69 -0.62 10.85 16 35 H 0.03 1.77 7.57 -2.39 -0.02 1.75 16 36 H 0.00 0.02 7.96 -2.39 -0.02 0.00 16 37 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 38 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 39 H 0.08 3.15 8.14 -2.38 -0.02 3.13 16 40 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -65.59 341.23 3.77 -61.82 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.39 Total: 23.79 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 4.23 Total: -24.23 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -2.79 Total: -80.24 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.08 Total: -27.31 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -65.59 3.77 -61.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594935108.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.685 kcal (2) G-P(sol) polarization free energy of solvation -65.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds