Wall clock time and date at job start Mon Mar 30 2020 05:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46928 * 2 1 4 4 C 1.52994 * 109.47646 * 120.00642 * 2 1 3 5 5 C 1.50703 * 109.46851 * 295.00060 * 4 2 1 6 6 O 1.21289 * 120.00095 * 359.97438 * 5 4 2 7 7 N 1.34776 * 119.99883 * 179.97438 * 5 4 2 8 8 C 1.37095 * 120.00060 * 179.97438 * 7 5 4 9 9 H 1.07996 * 120.00127 * 224.49172 * 8 7 5 10 10 C 1.38953 * 120.00138 * 44.49462 * 8 7 5 11 11 N 1.31409 * 119.99683 * 18.00055 * 10 8 7 12 12 Si 1.86801 * 120.00063 * 198.01149 * 10 8 7 13 13 H 1.48496 * 109.47010 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47582 * 119.99561 * 12 10 8 15 15 H 1.48507 * 109.46793 * 239.99713 * 12 10 8 16 16 C 1.46504 * 120.00120 * 359.97438 * 7 5 4 17 17 C 1.52997 * 117.49895 * 183.27086 * 16 7 5 18 18 C 1.53000 * 117.49859 * 114.61446 * 16 7 5 19 19 C 1.53000 * 109.47186 * 240.00846 * 2 1 3 20 20 H 1.08991 * 110.42186 * 184.14095 * 19 2 1 21 21 C 1.54481 * 110.37368 * 61.83087 * 19 2 1 22 22 C 1.54510 * 104.06299 * 217.19271 * 21 19 2 23 23 C 1.54473 * 104.06427 * 359.97438 * 22 21 19 24 24 O 1.44426 * 110.37114 * 306.45163 * 19 2 1 25 25 H 1.09001 * 109.47394 * 59.99146 * 1 2 3 26 26 H 1.09000 * 109.47213 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46780 * 299.99472 * 1 2 3 28 28 H 1.08996 * 109.46763 * 54.99639 * 4 2 1 29 29 H 1.08991 * 109.47592 * 175.00144 * 4 2 1 30 30 H 0.97008 * 119.99680 * 174.96336 * 11 10 8 31 31 H 1.09001 * 115.54691 * 328.94220 * 16 7 5 32 32 H 1.08999 * 117.50281 * 0.02562 * 17 16 7 33 33 H 1.09000 * 117.49773 * 145.01834 * 17 16 7 34 34 H 1.09000 * 117.49847 * 214.98371 * 18 16 7 35 35 H 1.09002 * 117.49564 * 359.97306 * 18 16 7 36 36 H 1.09005 * 110.51370 * 335.83281 * 21 19 2 37 37 H 1.08997 * 110.51145 * 98.41114 * 21 19 2 38 38 H 1.09008 * 110.51092 * 118.64547 * 22 21 19 39 39 H 1.09000 * 110.51395 * 241.21333 * 22 21 19 40 40 H 1.08996 * 110.37252 * 265.14786 * 23 22 21 41 41 H 1.09001 * 110.37366 * 142.80495 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 8 1.0117 1.0873 2.3633 7 7 1.9846 -0.3922 3.7000 8 6 1.6224 0.3160 4.8166 9 1 2.3380 0.4778 5.6092 10 6 0.3346 0.8256 4.9288 11 7 -0.6277 0.3522 4.1693 12 14 -0.0287 2.1837 6.1588 13 1 1.2161 2.5380 6.8870 14 1 -0.5395 3.3787 5.4403 15 1 -1.0516 1.7137 7.1274 16 6 2.7448 -1.6371 3.8368 17 6 3.0376 -2.1339 5.2539 18 6 4.1629 -1.5404 4.4029 19 6 2.0400 -0.7211 -1.2493 20 1 3.1272 -0.7944 -1.2289 21 6 1.5747 0.0173 -2.5240 22 6 1.2667 -1.1190 -3.5247 23 6 1.5829 -2.4093 -2.7366 24 8 1.4492 -2.0353 -1.3477 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6054 -1.7198 1.2949 29 1 3.1263 -0.7995 1.2054 30 1 -1.5403 0.6553 4.2975 31 1 2.5596 -2.3878 3.0685 32 1 2.6644 -1.5348 6.0845 33 1 3.0455 -3.2115 5.4179 34 1 4.9107 -2.2276 4.0072 35 1 4.5305 -0.5504 4.6730 36 1 0.6769 0.6011 -2.3211 37 1 2.3688 0.6595 -2.9048 38 1 0.2166 -1.0968 -3.8165 39 1 1.9077 -1.0389 -4.4027 40 1 2.6001 -2.7413 -2.9445 41 1 0.8681 -3.1927 -2.9886 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596916748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:27 Heat of formation + Delta-G solvation = -51.231178 kcal Electronic energy + Delta-G solvation = -21504.357366 eV Core-core repulsion = 18385.432135 eV Total energy + Delta-G solvation = -3118.925230 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.57289 -38.41493 -36.17724 -34.03273 -32.55364 -31.91320 -30.84079 -28.27929 -26.95688 -24.75356 -23.25973 -21.66703 -21.39928 -20.96501 -19.82836 -18.65313 -16.44128 -16.21482 -15.97465 -15.44331 -15.20493 -14.58963 -14.24122 -14.06260 -13.72619 -13.54096 -12.95701 -12.90013 -12.45351 -11.84899 -11.68683 -11.52288 -11.26255 -11.24767 -10.92874 -10.90267 -10.81514 -10.78883 -10.53132 -10.22096 -10.13634 -10.05939 -9.97513 -9.86055 -9.61906 -9.50771 -8.62575 -7.80599 -6.91682 -6.02620 -3.77775 3.33544 3.43109 3.44890 4.07377 4.23873 4.34765 4.67479 4.77862 4.86699 4.95256 5.01798 5.20710 5.32111 5.39410 5.55238 5.59840 5.65601 5.68237 5.77643 5.81550 5.84821 5.91261 5.99035 6.02578 6.12510 6.27331 6.28368 6.32255 6.51111 6.53600 6.62942 6.72049 6.86495 6.93031 7.00165 7.11632 7.36977 7.69892 8.36922 9.17147 9.27665 9.77664 10.42752 11.06286 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022661 B = 0.005835 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.327500 B = 4797.379137 C = 5662.733326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.061 4.061 3 H 0.082 0.918 4 C -0.126 4.126 5 C 0.487 3.513 6 O -0.532 6.532 7 N -0.432 5.432 8 C -0.348 4.348 9 H 0.075 0.925 10 C 0.075 3.925 11 N -0.832 5.832 12 Si 0.910 3.090 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.287 1.287 16 C 0.078 3.922 17 C -0.175 4.175 18 C -0.209 4.209 19 C 0.079 3.921 20 H 0.063 0.937 21 C -0.155 4.155 22 C -0.154 4.154 23 C 0.043 3.957 24 O -0.363 6.363 25 H 0.037 0.963 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.262 0.738 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.804 -5.061 -11.107 13.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 H 0.100 0.900 4 C -0.166 4.166 5 C 0.275 3.725 6 O -0.410 6.410 7 N -0.153 5.153 8 C -0.475 4.475 9 H 0.092 0.908 10 C -0.136 4.136 11 N -0.466 5.466 12 Si 0.737 3.263 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.213 1.213 16 C -0.029 4.029 17 C -0.213 4.213 18 C -0.248 4.248 19 C 0.021 3.979 20 H 0.081 0.919 21 C -0.193 4.193 22 C -0.192 4.192 23 C -0.034 4.034 24 O -0.281 6.281 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.164 -4.571 -11.085 13.056 hybrid contribution -0.071 0.488 0.383 0.625 sum 5.093 -4.083 -10.703 12.536 Atomic orbital electron populations 1.21864 0.94039 1.01713 1.02466 1.20856 0.97687 0.98412 0.91030 0.89953 1.21603 1.00473 1.00347 0.94212 1.19820 0.82912 0.86324 0.83455 1.90470 1.39849 1.25431 1.85250 1.42815 1.49800 1.17523 1.05167 1.18850 0.95960 1.33613 0.99030 0.90781 1.25216 0.95282 0.97080 0.96000 1.69845 0.99946 1.39779 1.37015 0.86197 0.78098 0.82154 0.79843 1.19715 1.20744 1.21318 1.21693 0.93477 0.91080 0.96619 1.23055 1.02473 0.99505 0.96237 1.23311 0.92717 1.02059 1.06741 1.23158 0.96423 0.82818 0.95494 0.91889 1.23070 1.02684 0.98356 0.95146 1.22912 1.02266 0.95346 0.98658 1.23340 1.00573 0.96938 0.82570 1.89202 1.80931 1.33135 1.24875 0.94447 0.93198 0.89213 0.90345 0.91351 0.92819 0.88011 0.87577 0.89922 0.89926 0.89228 0.89858 0.90986 0.90962 0.91096 0.92791 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.51 37.16 0.32 -2.52 16 2 C -0.06 -1.11 1.94 -90.62 -0.18 -1.29 16 3 H 0.08 1.55 7.95 -51.93 -0.41 1.14 16 4 C -0.13 -2.52 3.67 -27.88 -0.10 -2.63 16 5 C 0.49 12.38 6.68 -10.98 -0.07 12.30 16 6 O -0.53 -15.31 11.74 5.55 0.07 -15.24 16 7 N -0.43 -11.00 2.83 -107.73 -0.31 -11.31 16 8 C -0.35 -9.62 7.91 -14.93 -0.12 -9.74 16 9 H 0.07 2.00 7.27 -52.49 -0.38 1.62 16 10 C 0.07 2.11 4.39 -17.47 -0.08 2.04 16 11 N -0.83 -24.76 11.74 55.50 0.65 -24.11 16 12 Si 0.91 22.19 29.59 -169.99 -5.03 17.16 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 14 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 C 0.08 1.61 5.87 -67.93 -0.40 1.21 16 17 C -0.18 -3.27 9.80 -26.70 -0.26 -3.53 16 18 C -0.21 -3.70 10.36 -26.70 -0.28 -3.97 16 19 C 0.08 1.16 2.98 -25.95 -0.08 1.08 16 20 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 21 C -0.15 -1.90 6.46 -25.16 -0.16 -2.06 16 22 C -0.15 -1.60 7.09 -25.17 -0.18 -1.78 16 23 C 0.04 0.49 7.63 37.93 0.29 0.78 16 24 O -0.36 -5.64 10.21 -35.23 -0.36 -6.00 16 25 H 0.04 0.64 6.21 -51.93 -0.32 0.32 16 26 H 0.05 0.99 7.57 -51.93 -0.39 0.60 16 27 H 0.09 2.17 5.95 -51.93 -0.31 1.86 16 28 H 0.08 1.59 7.46 -51.93 -0.39 1.21 16 29 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 30 H 0.26 7.47 8.32 -40.82 -0.34 7.13 16 31 H 0.10 1.94 6.96 -51.93 -0.36 1.58 16 32 H 0.11 2.19 6.73 -51.93 -0.35 1.84 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 36 H 0.08 1.09 5.91 -51.93 -0.31 0.79 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 322.44 15.07 4.86 4.86 Total: -1.00 -32.17 322.44 -8.00 -40.17 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.58 Total: 4.57 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -1.30 Total: -10.09 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.35 Total: -35.42 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.29 Total: -21.25 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.17 -8.00 -40.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.061 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds