Wall clock time and date at job start Mon Mar 30 2020 05:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46928 * 2 1 4 4 C 1.52994 * 109.47646 * 120.00642 * 2 1 3 5 5 C 1.50703 * 109.46851 * 295.00060 * 4 2 1 6 6 O 1.21289 * 120.00095 * 359.97438 * 5 4 2 7 7 N 1.34776 * 119.99883 * 179.97438 * 5 4 2 8 8 C 1.37095 * 120.00060 * 179.97438 * 7 5 4 9 9 H 1.07996 * 120.00127 * 224.49172 * 8 7 5 10 10 C 1.38953 * 120.00138 * 44.49462 * 8 7 5 11 11 N 1.31409 * 119.99683 * 18.00055 * 10 8 7 12 12 Si 1.86801 * 120.00063 * 198.01149 * 10 8 7 13 13 H 1.48496 * 109.47010 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47582 * 119.99561 * 12 10 8 15 15 H 1.48507 * 109.46793 * 239.99713 * 12 10 8 16 16 C 1.46504 * 120.00120 * 359.97438 * 7 5 4 17 17 C 1.52997 * 117.49895 * 183.27086 * 16 7 5 18 18 C 1.53000 * 117.49859 * 114.61446 * 16 7 5 19 19 C 1.53000 * 109.47186 * 240.00846 * 2 1 3 20 20 H 1.08991 * 110.42186 * 184.14095 * 19 2 1 21 21 C 1.54481 * 110.37368 * 61.83087 * 19 2 1 22 22 C 1.54510 * 104.06299 * 217.19271 * 21 19 2 23 23 C 1.54473 * 104.06427 * 359.97438 * 22 21 19 24 24 O 1.44426 * 110.37114 * 306.45163 * 19 2 1 25 25 H 1.09001 * 109.47394 * 59.99146 * 1 2 3 26 26 H 1.09000 * 109.47213 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46780 * 299.99472 * 1 2 3 28 28 H 1.08996 * 109.46763 * 54.99639 * 4 2 1 29 29 H 1.08991 * 109.47592 * 175.00144 * 4 2 1 30 30 H 0.97008 * 119.99680 * 174.96336 * 11 10 8 31 31 H 1.09001 * 115.54691 * 328.94220 * 16 7 5 32 32 H 1.08999 * 117.50281 * 0.02562 * 17 16 7 33 33 H 1.09000 * 117.49773 * 145.01834 * 17 16 7 34 34 H 1.09000 * 117.49847 * 214.98371 * 18 16 7 35 35 H 1.09002 * 117.49564 * 359.97306 * 18 16 7 36 36 H 1.09005 * 110.51370 * 335.83281 * 21 19 2 37 37 H 1.08997 * 110.51145 * 98.41114 * 21 19 2 38 38 H 1.09008 * 110.51092 * 118.64547 * 22 21 19 39 39 H 1.09000 * 110.51395 * 241.21333 * 22 21 19 40 40 H 1.08996 * 110.37252 * 265.14786 * 23 22 21 41 41 H 1.09001 * 110.37366 * 142.80495 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 8 1.0117 1.0873 2.3633 7 7 1.9846 -0.3922 3.7000 8 6 1.6224 0.3160 4.8166 9 1 2.3380 0.4778 5.6092 10 6 0.3346 0.8256 4.9288 11 7 -0.6277 0.3522 4.1693 12 14 -0.0287 2.1837 6.1588 13 1 1.2161 2.5380 6.8870 14 1 -0.5395 3.3787 5.4403 15 1 -1.0516 1.7137 7.1274 16 6 2.7448 -1.6371 3.8368 17 6 3.0376 -2.1339 5.2539 18 6 4.1629 -1.5404 4.4029 19 6 2.0400 -0.7211 -1.2493 20 1 3.1272 -0.7944 -1.2289 21 6 1.5747 0.0173 -2.5240 22 6 1.2667 -1.1190 -3.5247 23 6 1.5829 -2.4093 -2.7366 24 8 1.4492 -2.0353 -1.3477 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6054 -1.7198 1.2949 29 1 3.1263 -0.7995 1.2054 30 1 -1.5403 0.6553 4.2975 31 1 2.5596 -2.3878 3.0685 32 1 2.6644 -1.5348 6.0845 33 1 3.0455 -3.2115 5.4179 34 1 4.9107 -2.2276 4.0072 35 1 4.5305 -0.5504 4.6730 36 1 0.6769 0.6011 -2.3211 37 1 2.3688 0.6595 -2.9048 38 1 0.2166 -1.0968 -3.8165 39 1 1.9077 -1.0389 -4.4027 40 1 2.6001 -2.7413 -2.9445 41 1 0.8681 -3.1927 -2.9886 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596916748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:27 Heat of formation + Delta-G solvation = -70.976935 kcal Electronic energy + Delta-G solvation = -21505.213606 eV Core-core repulsion = 18385.432135 eV Total energy + Delta-G solvation = -3119.781471 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.85605 -40.04999 -37.85804 -35.59567 -34.49447 -32.93833 -32.74872 -29.64808 -28.45975 -26.66056 -24.52887 -23.13605 -22.78243 -22.27116 -21.31718 -20.34543 -18.22866 -17.78496 -17.25229 -16.88185 -16.50160 -16.19324 -15.96762 -15.67253 -15.28328 -14.66374 -14.60803 -14.38020 -13.94166 -13.61876 -13.38145 -12.88162 -12.78001 -12.72451 -12.52057 -12.43005 -12.27405 -12.16067 -12.02848 -11.97233 -11.65388 -11.57253 -11.54658 -11.25027 -11.15354 -10.68200 -10.57471 -9.77441 -8.90330 -8.15287 -5.93694 1.35546 1.42869 1.50608 2.29221 2.47704 3.06580 3.12119 3.16438 3.40067 3.72911 3.81416 4.08453 4.11468 4.14043 4.15816 4.19163 4.31688 4.41919 4.47766 4.56543 4.66142 4.73693 4.83205 4.89840 4.90274 4.91780 4.96461 5.03147 5.07065 5.11998 5.20792 5.29193 5.36533 5.43662 5.47741 5.52591 5.67904 6.06036 6.25129 7.09610 7.28029 7.77953 8.45634 8.92986 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022661 B = 0.005835 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.327500 B = 4797.379137 C = 5662.733326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.058 4.058 3 H 0.072 0.928 4 C -0.110 4.110 5 C 0.470 3.530 6 O -0.577 6.577 7 N -0.449 5.449 8 C -0.355 4.355 9 H 0.074 0.926 10 C 0.023 3.977 11 N -0.869 5.869 12 Si 0.968 3.032 13 H -0.259 1.259 14 H -0.295 1.295 15 H -0.274 1.274 16 C 0.044 3.956 17 C -0.172 4.172 18 C -0.178 4.178 19 C 0.084 3.916 20 H 0.081 0.919 21 C -0.155 4.155 22 C -0.147 4.147 23 C 0.036 3.964 24 O -0.393 6.393 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.039 0.961 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.257 0.743 31 H 0.119 0.881 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.867 -6.289 -12.362 15.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.077 4.077 3 H 0.090 0.910 4 C -0.150 4.150 5 C 0.260 3.740 6 O -0.458 6.458 7 N -0.170 5.170 8 C -0.483 4.483 9 H 0.091 0.909 10 C -0.183 4.183 11 N -0.505 5.505 12 Si 0.794 3.206 13 H -0.183 1.183 14 H -0.222 1.222 15 H -0.200 1.200 16 C -0.061 4.061 17 C -0.210 4.210 18 C -0.217 4.217 19 C 0.027 3.973 20 H 0.099 0.901 21 C -0.193 4.193 22 C -0.185 4.185 23 C -0.041 4.041 24 O -0.313 6.313 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.066 0.934 31 H 0.137 0.863 32 H 0.099 0.901 33 H 0.133 0.867 34 H 0.142 0.858 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.090 0.910 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.263 -5.833 -12.321 15.446 hybrid contribution -0.656 0.820 0.773 1.304 sum 6.607 -5.014 -11.548 14.218 Atomic orbital electron populations 1.21666 0.95621 1.00548 1.00962 1.20798 0.96255 0.98341 0.92325 0.91016 1.21494 1.01899 0.99216 0.92399 1.20765 0.82054 0.86310 0.84908 1.90436 1.41679 1.27547 1.86183 1.43066 1.50140 1.19112 1.04724 1.19075 0.95777 1.33873 0.99529 0.90866 1.26023 0.95381 0.98985 0.97942 1.69967 0.99972 1.41405 1.39127 0.85288 0.78506 0.78887 0.77965 1.18318 1.22189 1.20010 1.21977 0.95455 0.90016 0.98677 1.23105 1.02598 1.01102 0.94159 1.23317 0.91845 1.02105 1.04398 1.23059 0.97101 0.82805 0.94371 0.90112 1.23071 1.02692 0.98949 0.94569 1.22905 1.03019 0.93728 0.98838 1.23596 1.02073 0.97722 0.80665 1.89168 1.81317 1.33268 1.27524 0.92362 0.94018 0.94197 0.90624 0.88796 0.93397 0.86332 0.90116 0.86658 0.85776 0.90705 0.91316 0.88955 0.90876 0.88442 0.90974 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 8.51 71.98 0.61 -4.72 16 2 C -0.06 -2.12 1.94 -10.80 -0.02 -2.14 16 3 H 0.07 2.74 7.95 -2.39 -0.02 2.72 16 4 C -0.11 -4.39 3.67 29.85 0.11 -4.28 16 5 C 0.47 24.52 6.68 87.66 0.59 25.11 16 6 O -0.58 -34.78 11.74 -3.06 -0.04 -34.82 16 7 N -0.45 -23.24 2.83 -613.13 -1.74 -24.97 16 8 C -0.35 -20.08 7.91 84.04 0.66 -19.41 16 9 H 0.07 4.04 7.27 -2.91 -0.02 4.01 16 10 C 0.02 1.33 4.39 84.93 0.37 1.70 16 11 N -0.87 -53.99 11.74 21.66 0.25 -53.73 16 12 Si 0.97 46.86 29.59 68.60 2.03 48.89 16 13 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 14 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 15 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 16 C 0.04 1.77 5.87 44.99 0.26 2.03 16 17 C -0.17 -6.13 9.80 30.62 0.30 -5.83 16 18 C -0.18 -5.80 10.36 30.62 0.32 -5.49 16 19 C 0.08 2.30 2.98 31.10 0.09 2.40 16 20 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 21 C -0.16 -3.42 6.46 31.61 0.20 -3.22 16 22 C -0.15 -2.58 7.09 31.61 0.22 -2.35 16 23 C 0.04 0.71 7.63 72.48 0.55 1.27 16 24 O -0.39 -11.49 10.21 -148.98 -1.52 -13.01 16 25 H 0.06 2.05 6.21 -2.39 -0.01 2.04 16 26 H 0.04 1.71 7.57 -2.39 -0.02 1.69 16 27 H 0.04 2.03 5.95 -2.39 -0.01 2.02 16 28 H 0.08 3.06 7.46 -2.39 -0.02 3.04 16 29 H 0.09 3.22 8.11 -2.39 -0.02 3.20 16 30 H 0.26 15.40 8.32 -92.70 -0.77 14.63 16 31 H 0.12 4.32 6.96 -2.39 -0.02 4.31 16 32 H 0.08 3.30 6.73 -2.39 -0.02 3.28 16 33 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 35 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.07 1.71 5.91 -2.38 -0.01 1.69 16 37 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -73.50 322.44 4.27 -69.22 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 1.00 Total: 23.36 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 4.28 Total: -14.93 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -1.48 Total: -78.70 kcal Atomic # 8 Polarization: -46.27 SS G_CDS: -1.56 Total: -47.83 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -73.50 4.27 -69.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.754 kcal (2) G-P(sol) polarization free energy of solvation -73.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds