Wall clock time and date at job start Mon Mar 30 2020 05:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47046 * 2 1 4 4 C 1.53003 * 109.46893 * 240.00011 * 2 1 3 5 5 C 1.50702 * 109.47058 * 65.00369 * 4 2 1 6 6 O 1.21290 * 119.99934 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99717 * 180.02562 * 5 4 2 8 8 C 1.37099 * 119.99463 * 180.02562 * 7 5 4 9 9 H 1.08011 * 119.99747 * 226.10542 * 8 7 5 10 10 C 1.38948 * 120.00572 * 46.10289 * 8 7 5 11 11 N 1.31416 * 119.99685 * 17.40131 * 10 8 7 12 12 Si 1.86798 * 120.00312 * 197.67050 * 10 8 7 13 13 H 1.48499 * 109.47089 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46797 * 120.00128 * 12 10 8 15 15 H 1.48493 * 109.47262 * 240.00228 * 12 10 8 16 16 C 1.46494 * 120.00121 * 359.97438 * 7 5 4 17 17 C 1.53005 * 117.49744 * 183.10667 * 16 7 5 18 18 C 1.53003 * 117.49650 * 114.48512 * 16 7 5 19 19 C 1.52992 * 109.46920 * 120.00445 * 2 1 3 20 20 H 1.09004 * 109.87408 * 178.99320 * 19 2 1 21 21 C 1.54104 * 109.87779 * 299.99577 * 19 2 1 22 22 C 1.54812 * 104.18615 * 121.45975 * 21 19 2 23 23 C 1.54995 * 102.09580 * 20.87779 * 22 21 19 24 24 O 1.43746 * 109.88291 * 57.83035 * 19 2 1 25 25 H 1.08997 * 109.47303 * 300.00245 * 1 2 3 26 26 H 1.09007 * 109.46860 * 59.99683 * 1 2 3 27 27 H 1.08994 * 109.47385 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47467 * 305.00179 * 4 2 1 29 29 H 1.09002 * 109.46829 * 185.00298 * 4 2 1 30 30 H 0.96994 * 119.99929 * 184.91834 * 11 10 8 31 31 H 1.08996 * 115.55159 * 328.81890 * 16 7 5 32 32 H 1.09000 * 117.49589 * 0.02562 * 17 16 7 33 33 H 1.08998 * 117.49944 * 145.02550 * 17 16 7 34 34 H 1.09002 * 117.49984 * 214.97532 * 18 16 7 35 35 H 1.08997 * 117.49763 * 359.97438 * 18 16 7 36 36 H 1.09001 * 110.48931 * 240.13215 * 21 19 2 37 37 H 1.08996 * 110.48684 * 2.77777 * 21 19 2 38 38 H 1.08998 * 110.90740 * 139.08443 * 22 21 19 39 39 H 1.09005 * 110.90038 * 262.64532 * 22 21 19 40 40 H 1.09001 * 110.61331 * 81.47895 * 23 22 21 41 41 H 1.08997 * 110.61781 * 204.47849 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0110 1.0871 -2.3633 7 7 1.9844 -0.3919 -3.7002 8 6 1.6222 0.3165 -4.8167 9 1 1.1928 -0.1954 -5.6653 10 6 1.8074 1.6930 -4.8566 11 7 2.6212 2.2715 -4.0022 12 14 0.8940 2.7222 -6.1199 13 1 0.0407 1.8387 -6.9545 14 1 0.0415 3.7189 -5.4234 15 1 1.8731 3.4271 -6.9856 16 6 2.7453 -1.6362 -3.8371 17 6 3.1671 -2.0550 -5.2470 18 6 2.0535 -2.8154 -4.5240 19 6 2.0399 -0.7213 1.2491 20 1 3.1298 -0.7408 1.2468 21 6 1.5315 -0.0022 2.5137 22 6 0.7320 -1.0891 3.2727 23 6 1.3097 -2.3960 2.6722 24 8 1.5243 -2.0627 1.2838 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6053 -1.7198 -1.2953 29 1 3.1263 -0.7995 -1.2056 30 1 2.6965 3.2383 -3.9826 31 1 3.4296 -1.8613 -3.0191 32 1 2.8787 -1.4043 -6.0726 33 1 4.1291 -2.5555 -5.3568 34 1 2.2829 -3.8162 -4.1582 35 1 1.0321 -2.6654 -4.8737 36 1 2.3695 0.3463 3.1174 37 1 0.8821 0.8306 2.2439 38 1 0.9233 -1.0356 4.3444 39 1 -0.3347 -1.0033 3.0651 40 1 2.2519 -2.6563 3.1545 41 1 0.5919 -3.2110 2.7647 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596916750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:31 Heat of formation + Delta-G solvation = -53.500679 kcal Electronic energy + Delta-G solvation = -21522.520746 eV Core-core repulsion = 18403.497103 eV Total energy + Delta-G solvation = -3119.023643 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.65278 -38.41973 -36.17654 -34.02426 -32.57457 -31.93740 -30.83484 -28.29320 -27.09633 -24.71953 -23.17137 -21.68205 -21.50546 -20.99426 -19.80354 -18.69819 -16.40479 -16.25409 -15.96944 -15.44195 -15.32950 -14.60062 -14.37267 -13.86211 -13.73887 -13.48968 -13.17060 -12.75765 -12.33722 -12.09909 -11.73980 -11.43190 -11.32859 -11.21754 -11.11241 -10.93973 -10.80443 -10.77062 -10.48592 -10.30600 -10.15323 -10.12987 -10.02979 -9.85928 -9.63803 -9.40397 -8.59586 -7.85580 -6.93467 -6.02221 -3.82344 3.34489 3.43738 3.45138 4.02186 4.24548 4.35571 4.64776 4.78477 4.86231 4.94338 5.01168 5.19702 5.31358 5.38868 5.52736 5.60129 5.67293 5.69015 5.73558 5.78243 5.86656 5.87824 5.97886 6.07405 6.13271 6.26519 6.30502 6.30965 6.42605 6.50920 6.60192 6.67620 6.85897 6.89974 7.00991 7.13352 7.16099 7.69554 8.37045 9.16959 9.26227 9.75889 10.40574 11.04748 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022985 B = 0.005834 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.883570 B = 4798.168386 C = 5648.331888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 H 0.085 0.915 4 C -0.125 4.125 5 C 0.491 3.509 6 O -0.534 6.534 7 N -0.433 5.433 8 C -0.341 4.341 9 H 0.074 0.926 10 C 0.074 3.926 11 N -0.838 5.838 12 Si 0.905 3.095 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.287 1.287 16 C 0.078 3.922 17 C -0.175 4.175 18 C -0.208 4.208 19 C 0.080 3.920 20 H 0.064 0.936 21 C -0.153 4.153 22 C -0.154 4.154 23 C 0.045 3.955 24 O -0.366 6.366 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.262 0.738 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.058 -8.111 11.149 13.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 H 0.103 0.897 4 C -0.165 4.165 5 C 0.279 3.721 6 O -0.412 6.412 7 N -0.155 5.155 8 C -0.468 4.468 9 H 0.092 0.908 10 C -0.136 4.136 11 N -0.472 5.472 12 Si 0.733 3.267 13 H -0.196 1.196 14 H -0.207 1.207 15 H -0.213 1.213 16 C -0.029 4.029 17 C -0.213 4.213 18 C -0.247 4.247 19 C 0.023 3.977 20 H 0.081 0.919 21 C -0.191 4.191 22 C -0.191 4.191 23 C -0.032 4.032 24 O -0.285 6.285 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.185 -7.505 11.045 13.355 hybrid contribution -0.127 0.595 -0.344 0.699 sum -0.313 -6.910 10.701 12.742 Atomic orbital electron populations 1.21860 0.94636 1.01312 1.02279 1.20984 0.97146 0.98871 0.91538 0.89711 1.21586 1.00843 1.00035 0.94067 1.19886 0.82000 0.86473 0.83741 1.90463 1.41194 1.24275 1.85295 1.42805 1.47822 1.19372 1.05462 1.18866 1.42281 0.89968 0.95724 0.90818 1.25202 0.93909 0.97891 0.96575 1.69876 1.31180 1.10168 1.35931 0.86264 0.79653 0.80332 0.80492 1.19649 1.20727 1.21320 1.21692 0.97624 0.88020 0.95526 1.23048 0.97687 1.03103 0.97446 1.23296 0.98195 0.96245 1.06952 1.22890 0.97153 0.82248 0.95436 0.91856 1.23041 1.00336 0.99396 0.96336 1.23109 1.00904 0.95258 0.99868 1.23483 0.99383 0.97209 0.83098 1.88919 1.85570 1.30221 1.23798 0.94155 0.90105 0.93272 0.90251 0.91292 0.92807 0.88094 0.87600 0.89937 0.89877 0.89223 0.91160 0.89807 0.90814 0.90598 0.92708 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.51 37.16 0.32 -2.29 16 2 C -0.07 -1.20 1.82 -90.62 -0.16 -1.37 16 3 H 0.08 1.68 7.96 -51.93 -0.41 1.27 16 4 C -0.12 -2.51 3.61 -27.88 -0.10 -2.61 16 5 C 0.49 12.51 6.68 -10.98 -0.07 12.44 16 6 O -0.53 -15.38 11.88 5.55 0.07 -15.31 16 7 N -0.43 -11.09 2.82 -107.73 -0.30 -11.39 16 8 C -0.34 -9.50 7.83 -14.93 -0.12 -9.61 16 9 H 0.07 2.01 7.34 -52.48 -0.39 1.62 16 10 C 0.07 2.11 4.42 -17.47 -0.08 2.03 16 11 N -0.84 -25.07 11.86 55.50 0.66 -24.41 16 12 Si 0.91 22.22 29.59 -169.99 -5.03 17.19 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 C 0.08 1.62 5.87 -67.93 -0.40 1.22 16 17 C -0.18 -3.30 9.81 -26.73 -0.26 -3.56 16 18 C -0.21 -3.74 10.36 -26.73 -0.28 -4.01 16 19 C 0.08 1.18 3.15 -26.16 -0.08 1.10 16 20 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 21 C -0.15 -1.84 6.15 -25.20 -0.15 -2.00 16 22 C -0.15 -1.58 7.15 -24.72 -0.18 -1.75 16 23 C 0.05 0.50 7.72 38.21 0.29 0.79 16 24 O -0.37 -5.48 9.99 -35.23 -0.35 -5.83 16 25 H 0.04 0.64 6.41 -51.93 -0.33 0.30 16 26 H 0.08 1.75 5.95 -51.92 -0.31 1.44 16 27 H 0.05 0.87 7.64 -51.93 -0.40 0.47 16 28 H 0.08 1.54 7.87 -51.93 -0.41 1.13 16 29 H 0.07 1.32 7.57 -51.93 -0.39 0.93 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.10 1.92 6.96 -51.93 -0.36 1.56 16 32 H 0.11 2.20 6.76 -51.93 -0.35 1.84 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 1.06 6.24 -51.93 -0.32 0.73 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 322.83 15.07 4.86 4.86 Total: -1.00 -32.32 322.83 -7.99 -40.31 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.62 Total: 4.21 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -1.27 Total: -9.63 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.35 Total: -35.80 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.29 Total: -21.14 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.32 -7.99 -40.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.193 kcal (2) G-P(sol) polarization free energy of solvation -32.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds