Wall clock time and date at job start Mon Mar 30 2020 05:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47046 * 2 1 4 4 C 1.53003 * 109.46893 * 240.00011 * 2 1 3 5 5 C 1.50702 * 109.47058 * 65.00369 * 4 2 1 6 6 O 1.21290 * 119.99934 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99717 * 180.02562 * 5 4 2 8 8 C 1.37099 * 119.99463 * 180.02562 * 7 5 4 9 9 H 1.08011 * 119.99747 * 226.10542 * 8 7 5 10 10 C 1.38948 * 120.00572 * 46.10289 * 8 7 5 11 11 N 1.31416 * 119.99685 * 17.40131 * 10 8 7 12 12 Si 1.86798 * 120.00312 * 197.67050 * 10 8 7 13 13 H 1.48499 * 109.47089 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46797 * 120.00128 * 12 10 8 15 15 H 1.48493 * 109.47262 * 240.00228 * 12 10 8 16 16 C 1.46494 * 120.00121 * 359.97438 * 7 5 4 17 17 C 1.53005 * 117.49744 * 183.10667 * 16 7 5 18 18 C 1.53003 * 117.49650 * 114.48512 * 16 7 5 19 19 C 1.52992 * 109.46920 * 120.00445 * 2 1 3 20 20 H 1.09004 * 109.87408 * 178.99320 * 19 2 1 21 21 C 1.54104 * 109.87779 * 299.99577 * 19 2 1 22 22 C 1.54812 * 104.18615 * 121.45975 * 21 19 2 23 23 C 1.54995 * 102.09580 * 20.87779 * 22 21 19 24 24 O 1.43746 * 109.88291 * 57.83035 * 19 2 1 25 25 H 1.08997 * 109.47303 * 300.00245 * 1 2 3 26 26 H 1.09007 * 109.46860 * 59.99683 * 1 2 3 27 27 H 1.08994 * 109.47385 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47467 * 305.00179 * 4 2 1 29 29 H 1.09002 * 109.46829 * 185.00298 * 4 2 1 30 30 H 0.96994 * 119.99929 * 184.91834 * 11 10 8 31 31 H 1.08996 * 115.55159 * 328.81890 * 16 7 5 32 32 H 1.09000 * 117.49589 * 0.02562 * 17 16 7 33 33 H 1.08998 * 117.49944 * 145.02550 * 17 16 7 34 34 H 1.09002 * 117.49984 * 214.97532 * 18 16 7 35 35 H 1.08997 * 117.49763 * 359.97438 * 18 16 7 36 36 H 1.09001 * 110.48931 * 240.13215 * 21 19 2 37 37 H 1.08996 * 110.48684 * 2.77777 * 21 19 2 38 38 H 1.08998 * 110.90740 * 139.08443 * 22 21 19 39 39 H 1.09005 * 110.90038 * 262.64532 * 22 21 19 40 40 H 1.09001 * 110.61331 * 81.47895 * 23 22 21 41 41 H 1.08997 * 110.61781 * 204.47849 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0110 1.0871 -2.3633 7 7 1.9844 -0.3919 -3.7002 8 6 1.6222 0.3165 -4.8167 9 1 1.1928 -0.1954 -5.6653 10 6 1.8074 1.6930 -4.8566 11 7 2.6212 2.2715 -4.0022 12 14 0.8940 2.7222 -6.1199 13 1 0.0407 1.8387 -6.9545 14 1 0.0415 3.7189 -5.4234 15 1 1.8731 3.4271 -6.9856 16 6 2.7453 -1.6362 -3.8371 17 6 3.1671 -2.0550 -5.2470 18 6 2.0535 -2.8154 -4.5240 19 6 2.0399 -0.7213 1.2491 20 1 3.1298 -0.7408 1.2468 21 6 1.5315 -0.0022 2.5137 22 6 0.7320 -1.0891 3.2727 23 6 1.3097 -2.3960 2.6722 24 8 1.5243 -2.0627 1.2838 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6053 -1.7198 -1.2953 29 1 3.1263 -0.7995 -1.2056 30 1 2.6965 3.2383 -3.9826 31 1 3.4296 -1.8613 -3.0191 32 1 2.8787 -1.4043 -6.0726 33 1 4.1291 -2.5555 -5.3568 34 1 2.2829 -3.8162 -4.1582 35 1 1.0321 -2.6654 -4.8737 36 1 2.3695 0.3463 3.1174 37 1 0.8821 0.8306 2.2439 38 1 0.9233 -1.0356 4.3444 39 1 -0.3347 -1.0033 3.0651 40 1 2.2519 -2.6563 3.1545 41 1 0.5919 -3.2110 2.7647 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596916750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:31 Heat of formation + Delta-G solvation = -73.195244 kcal Electronic energy + Delta-G solvation = -21523.374767 eV Core-core repulsion = 18403.497103 eV Total energy + Delta-G solvation = -3119.877664 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.91649 -40.07638 -37.87093 -35.57119 -34.50862 -32.97168 -32.74358 -29.63146 -28.57096 -26.63076 -24.40889 -23.14186 -22.81091 -22.40369 -21.29554 -20.38173 -18.22233 -17.77826 -17.27299 -16.86640 -16.59489 -16.36139 -15.93657 -15.62089 -15.23389 -14.84143 -14.55520 -14.09409 -13.96960 -13.79712 -13.24525 -12.97246 -12.85919 -12.77447 -12.53138 -12.38129 -12.27288 -12.11269 -12.07302 -11.99034 -11.69863 -11.58736 -11.51440 -11.37856 -11.17800 -10.67522 -10.48648 -9.82623 -8.94178 -8.15365 -5.99506 1.35572 1.41888 1.50133 2.30048 2.44748 3.02830 3.10259 3.15693 3.39038 3.71712 3.81529 4.06556 4.10279 4.11412 4.17603 4.19291 4.30255 4.38842 4.49171 4.58686 4.60867 4.76787 4.85769 4.89366 4.90740 4.90922 4.96279 5.00814 5.08013 5.10988 5.22090 5.28234 5.35952 5.42462 5.46980 5.50960 5.59841 6.11018 6.24101 7.08113 7.25222 7.74858 8.42007 8.89924 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022985 B = 0.005834 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.883570 B = 4798.168386 C = 5648.331888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.065 4.065 3 H 0.059 0.941 4 C -0.109 4.109 5 C 0.474 3.526 6 O -0.579 6.579 7 N -0.451 5.451 8 C -0.349 4.349 9 H 0.072 0.928 10 C 0.023 3.977 11 N -0.874 5.874 12 Si 0.964 3.036 13 H -0.260 1.260 14 H -0.293 1.293 15 H -0.274 1.274 16 C 0.044 3.956 17 C -0.170 4.170 18 C -0.181 4.181 19 C 0.087 3.913 20 H 0.070 0.930 21 C -0.153 4.153 22 C -0.147 4.147 23 C 0.039 3.961 24 O -0.390 6.390 25 H 0.060 0.940 26 H 0.038 0.962 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.257 0.743 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.464 -10.162 12.345 15.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.084 4.084 3 H 0.077 0.923 4 C -0.149 4.149 5 C 0.264 3.736 6 O -0.460 6.460 7 N -0.172 5.172 8 C -0.477 4.477 9 H 0.090 0.910 10 C -0.182 4.182 11 N -0.510 5.510 12 Si 0.789 3.211 13 H -0.184 1.184 14 H -0.220 1.220 15 H -0.200 1.200 16 C -0.061 4.061 17 C -0.207 4.207 18 C -0.220 4.220 19 C 0.029 3.971 20 H 0.087 0.913 21 C -0.191 4.191 22 C -0.185 4.185 23 C -0.037 4.037 24 O -0.309 6.309 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.139 0.861 32 H 0.099 0.901 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.232 -9.604 12.219 15.543 hybrid contribution -0.273 1.130 -0.719 1.367 sum -0.041 -8.473 11.500 14.285 Atomic orbital electron populations 1.21696 0.94874 1.01120 1.01198 1.20921 0.96902 0.97874 0.92656 0.92275 1.21474 1.01372 0.99676 0.92369 1.20819 0.81246 0.86367 0.85170 1.90429 1.43032 1.26347 1.86213 1.43060 1.48394 1.20704 1.05029 1.19075 1.41816 0.90502 0.96281 0.91043 1.26003 0.94682 0.99130 0.98425 1.69978 1.32927 1.09888 1.38221 0.85359 0.78632 0.78636 0.78472 1.18410 1.21998 1.19993 1.21995 0.99252 0.87217 0.97606 1.23095 0.99701 1.02757 0.95170 1.23301 0.97038 0.96889 1.04727 1.22737 0.97326 0.82513 0.94518 0.91259 1.23044 1.01139 0.99366 0.95557 1.23107 1.00282 0.93893 1.01181 1.23746 1.00750 0.97962 0.81274 1.88880 1.85694 1.29900 1.26476 0.92082 0.94257 0.92814 0.89214 0.90330 0.93348 0.86138 0.90133 0.86510 0.85897 0.90887 0.89236 0.90890 0.88124 0.90980 0.91058 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 8.51 71.98 0.61 -4.24 16 2 C -0.06 -2.35 1.82 -10.79 -0.02 -2.37 16 3 H 0.06 2.44 7.96 -2.39 -0.02 2.42 16 4 C -0.11 -4.38 3.61 29.85 0.11 -4.27 16 5 C 0.47 24.86 6.68 87.66 0.59 25.44 16 6 O -0.58 -34.92 11.88 -3.06 -0.04 -34.96 16 7 N -0.45 -23.45 2.82 -613.12 -1.73 -25.18 16 8 C -0.35 -19.87 7.83 84.04 0.66 -19.21 16 9 H 0.07 3.98 7.34 -2.91 -0.02 3.96 16 10 C 0.02 1.35 4.42 84.93 0.38 1.72 16 11 N -0.87 -54.17 11.86 21.66 0.26 -53.92 16 12 Si 0.96 46.85 29.59 68.60 2.03 48.88 16 13 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 14 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16 15 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 16 C 0.04 1.81 5.87 45.00 0.26 2.07 16 17 C -0.17 -6.09 9.81 30.60 0.30 -5.79 16 18 C -0.18 -6.08 10.36 30.60 0.32 -5.76 16 19 C 0.09 2.41 3.15 30.97 0.10 2.50 16 20 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 21 C -0.15 -3.35 6.15 31.59 0.19 -3.15 16 22 C -0.15 -2.55 7.15 31.90 0.23 -2.32 16 23 C 0.04 0.73 7.72 72.66 0.56 1.29 16 24 O -0.39 -10.78 9.99 -148.98 -1.49 -12.27 16 25 H 0.06 1.93 6.41 -2.39 -0.02 1.92 16 26 H 0.04 1.77 5.95 -2.38 -0.01 1.76 16 27 H 0.05 1.88 7.64 -2.39 -0.02 1.86 16 28 H 0.09 3.41 7.87 -2.39 -0.02 3.39 16 29 H 0.08 2.98 7.57 -2.39 -0.02 2.96 16 30 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.12 4.37 6.96 -2.39 -0.02 4.35 16 32 H 0.08 3.32 6.76 -2.39 -0.02 3.30 16 33 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 34 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.75 6.24 -2.39 -0.01 1.74 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -72.96 322.83 4.32 -68.64 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 1.00 Total: 22.91 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 4.28 Total: -14.09 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -1.47 Total: -79.10 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -1.52 Total: -47.23 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -72.96 4.32 -68.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.554 kcal (2) G-P(sol) polarization free energy of solvation -72.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds