Wall clock time and date at job start Mon Mar 30 2020 05:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47001 * 2 1 4 4 C 1.50693 * 109.46994 * 120.00408 * 2 1 3 5 5 H 1.07999 * 120.00161 * 120.00210 * 4 2 1 6 6 C 1.37877 * 120.00287 * 299.99456 * 4 2 1 7 7 N 1.31514 * 119.99527 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00338 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46951 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47306 * 119.99933 * 8 6 4 11 11 H 1.48500 * 109.47339 * 240.00231 * 8 6 4 12 12 C 1.50696 * 109.46654 * 240.00462 * 2 1 3 13 13 O 1.21288 * 119.99784 * 267.34673 * 12 2 1 14 14 N 1.34775 * 120.00392 * 87.34554 * 12 2 1 15 15 C 1.46500 * 119.99858 * 354.42291 * 14 12 2 16 16 C 1.53002 * 109.46814 * 263.26221 * 15 14 12 17 17 H 1.08995 * 110.56471 * 52.61760 * 16 15 14 18 18 C 1.54508 * 110.51158 * 175.29867 * 16 15 14 19 19 C 1.54480 * 104.06333 * 118.64292 * 18 16 15 20 20 O 1.44423 * 104.80520 * 23.97967 * 19 18 16 21 21 C 1.44427 * 105.27187 * 319.48763 * 20 19 18 22 22 C 1.46496 * 120.00254 * 174.41500 * 14 12 2 23 23 C 1.53000 * 117.49914 * 17.38316 * 22 14 12 24 24 C 1.53001 * 117.50233 * 308.75814 * 22 14 12 25 25 H 1.09001 * 109.47297 * 51.24239 * 1 2 3 26 26 H 1.09001 * 109.47389 * 171.24550 * 1 2 3 27 27 H 1.09013 * 109.47092 * 291.24303 * 1 2 3 28 28 H 0.97010 * 119.99927 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47396 * 143.26144 * 15 14 12 30 30 H 1.09003 * 109.47320 * 23.25820 * 15 14 12 31 31 H 1.08998 * 110.51356 * 237.28632 * 18 16 15 32 32 H 1.09000 * 110.51156 * 359.85837 * 18 16 15 33 33 H 1.08997 * 110.37178 * 142.81273 * 19 18 16 34 34 H 1.08996 * 110.37087 * 265.14443 * 19 18 16 35 35 H 1.08997 * 110.37318 * 281.67646 * 21 20 19 36 36 H 1.09003 * 110.37135 * 159.34314 * 21 20 19 37 37 H 1.09006 * 115.55072 * 163.09100 * 22 14 12 38 38 H 1.08999 * 117.49727 * 359.97438 * 23 22 14 39 39 H 1.08999 * 117.50463 * 145.02094 * 23 22 14 40 40 H 1.08999 * 117.50365 * 214.97941 * 24 22 14 41 41 H 1.09008 * 117.49256 * 0.02562 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.1484 -2.2859 3.6036 10 1 3.1474 -0.1861 4.8160 11 1 1.1679 -1.5868 4.8164 12 6 2.0322 -0.7103 -1.2305 13 8 2.2802 -1.8968 -1.1871 14 7 2.2059 -0.0272 -2.3793 15 6 1.7921 1.3754 -2.4672 16 6 0.4012 1.4581 -3.0993 17 1 -0.2977 0.8080 -2.5731 18 6 -0.1088 2.9165 -3.0966 19 6 -0.2935 3.2524 -4.5930 20 8 -0.4768 1.9735 -5.2385 21 6 0.4644 1.0854 -4.5972 22 6 2.8085 -0.6872 -3.5401 23 6 2.8462 -2.2168 -3.5424 24 6 4.1345 -1.4201 -3.3267 25 1 -0.3634 0.6433 -0.8014 26 1 -0.3634 -1.0157 -0.1564 27 1 -0.3634 0.3724 0.9579 28 1 0.7083 1.1608 3.4845 29 1 2.5039 1.9264 -3.0818 30 1 1.7632 1.8090 -1.4676 31 1 -1.0600 2.9875 -2.5690 32 1 0.6288 3.5783 -2.6426 33 1 -1.1740 3.8790 -4.7354 34 1 0.5944 3.7503 -4.9825 35 1 1.4686 1.2508 -4.9874 36 1 0.1661 0.0471 -4.7428 37 1 2.6589 -0.1857 -4.4963 38 1 2.4231 -2.7319 -2.6800 39 1 2.7213 -2.7219 -4.5001 40 1 4.8571 -1.4010 -4.1425 41 1 4.5583 -1.4114 -2.3224 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596926955.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:12 Heat of formation + Delta-G solvation = -43.405925 kcal Electronic energy + Delta-G solvation = -21735.120721 eV Core-core repulsion = 18616.534819 eV Total energy + Delta-G solvation = -3118.585902 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.11443 -38.98649 -35.99085 -34.87926 -33.47035 -31.70265 -30.25439 -29.14725 -25.40177 -25.23257 -23.76512 -22.67025 -21.98449 -21.17034 -20.40507 -18.14355 -16.97439 -16.42582 -16.11981 -15.58202 -15.40334 -15.14799 -14.71864 -14.09121 -13.91431 -13.56188 -13.18591 -12.82033 -12.56739 -12.50308 -12.22638 -11.66027 -11.47270 -11.30245 -11.17397 -11.00225 -10.93904 -10.80231 -10.65937 -10.52121 -10.33156 -10.25232 -10.02439 -9.98553 -9.74692 -8.98159 -8.48558 -8.10623 -7.90124 -6.07923 -4.11839 3.28927 3.36664 3.41279 3.48997 3.54125 3.97294 4.33616 4.42553 4.65794 4.79997 4.90103 5.05214 5.17143 5.22318 5.24686 5.31125 5.40896 5.44932 5.60606 5.65250 5.75611 5.81102 5.89399 5.91330 5.98890 6.06841 6.14614 6.26514 6.41200 6.63798 6.77391 6.79764 6.85401 6.95556 7.31116 7.37739 7.74097 7.92466 8.07477 8.32645 8.94101 9.19445 9.53357 10.98808 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019400 B = 0.006475 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.985553 B = 4323.408840 C = 5450.325484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.032 3.968 3 H 0.047 0.953 4 C -0.498 4.498 5 H 0.069 0.931 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.526 3.474 13 O -0.536 6.536 14 N -0.599 5.599 15 C 0.121 3.879 16 C -0.142 4.142 17 H 0.096 0.904 18 C -0.148 4.148 19 C 0.045 3.955 20 O -0.380 6.380 21 C 0.052 3.948 22 C 0.068 3.932 23 C -0.201 4.201 24 C -0.194 4.194 25 H 0.019 0.981 26 H 0.028 0.972 27 H 0.096 0.904 28 H 0.261 0.739 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.150 0.850 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.047 5.201 -12.970 13.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.011 3.989 3 H 0.065 0.935 4 C -0.537 4.537 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.318 3.682 13 O -0.412 6.412 14 N -0.331 5.331 15 C -0.003 4.003 16 C -0.162 4.162 17 H 0.114 0.886 18 C -0.187 4.187 19 C -0.032 4.032 20 O -0.299 6.299 21 C -0.024 4.024 22 C -0.037 4.037 23 C -0.238 4.238 24 C -0.233 4.233 25 H 0.038 0.962 26 H 0.048 0.952 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.134 0.866 38 H 0.167 0.833 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.141 4.624 -12.951 13.752 hybrid contribution 0.507 -0.222 0.883 1.042 sum 0.366 4.401 -12.067 12.850 Atomic orbital electron populations 1.21806 0.96173 0.98690 1.02614 1.18919 0.94340 0.96496 0.89146 0.93532 1.21107 1.31023 1.12485 0.89072 0.91296 1.24926 0.95093 0.95059 0.99067 1.69870 1.36934 1.23045 1.23495 0.86416 0.78686 0.79763 0.82518 1.19603 1.21044 1.20951 1.22080 0.74825 0.87391 0.83858 1.90285 1.51091 1.16146 1.83718 1.47614 1.62296 1.11670 1.11490 1.21668 0.93196 0.82336 1.03064 1.23145 0.99030 0.97271 0.96768 0.88578 1.22935 1.02704 0.96064 0.96956 1.23408 1.01357 0.86813 0.91638 1.89105 1.59882 1.20593 1.60327 1.23589 0.92732 0.94974 0.91146 1.21594 0.98750 0.93373 0.89975 1.24151 1.01088 0.93720 1.04848 1.23208 0.91320 1.05971 1.02798 0.96238 0.95237 0.88550 0.92948 0.91232 0.88041 0.90245 0.90017 0.89348 0.92502 0.92471 0.89204 0.86556 0.83255 0.90372 0.89394 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.03 37.16 0.34 -2.76 16 2 C 0.03 0.77 1.87 -92.93 -0.17 0.59 16 3 H 0.05 1.14 6.11 -51.93 -0.32 0.82 16 4 C -0.50 -13.80 8.33 -34.44 -0.29 -14.08 16 5 H 0.07 2.02 7.08 -52.49 -0.37 1.65 16 6 C 0.06 1.61 5.27 -17.82 -0.09 1.52 16 7 N -0.89 -24.46 11.29 55.43 0.63 -23.84 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.53 11.64 6.48 -10.99 -0.07 11.57 16 13 O -0.54 -13.20 11.80 5.55 0.07 -13.13 16 14 N -0.60 -10.45 2.83 -166.11 -0.47 -10.92 16 15 C 0.12 1.75 4.49 -4.04 -0.02 1.73 16 16 C -0.14 -1.89 2.96 -89.05 -0.26 -2.16 16 17 H 0.10 1.49 6.09 -51.93 -0.32 1.18 16 18 C -0.15 -1.65 6.74 -25.16 -0.17 -1.82 16 19 C 0.04 0.47 7.63 37.93 0.29 0.76 16 20 O -0.38 -5.09 11.65 -35.23 -0.41 -5.50 16 21 C 0.05 0.65 5.91 37.93 0.22 0.88 16 22 C 0.07 1.05 6.01 -67.93 -0.41 0.64 16 23 C -0.20 -3.30 9.64 -26.73 -0.26 -3.55 16 24 C -0.19 -3.05 9.91 -26.73 -0.26 -3.31 16 25 H 0.02 0.37 5.35 -51.93 -0.28 0.09 16 26 H 0.03 0.68 8.12 -51.93 -0.42 0.26 16 27 H 0.10 2.44 5.88 -51.92 -0.31 2.13 16 28 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.07 0.84 7.95 -51.93 -0.41 0.43 16 30 H 0.10 1.62 5.55 -51.93 -0.29 1.33 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.82 7.73 -51.93 -0.40 0.41 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.65 6.42 -51.93 -0.33 0.31 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.12 1.46 6.11 -51.93 -0.32 1.14 16 38 H 0.15 3.02 4.93 -53.55 -0.26 2.75 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.09 1.75 7.85 -51.92 -0.41 1.35 16 LS Contribution 315.04 15.07 4.75 4.75 Total: -1.00 -29.84 315.04 -7.73 -37.57 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.11 Total: 4.65 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -1.16 Total: -10.00 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.16 Total: -34.76 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.35 Total: -18.64 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.84 -7.73 -37.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596926955.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.835 kcal (2) G-P(sol) polarization free energy of solvation -29.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds