Wall clock time and date at job start Mon Mar 30 2020 05:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47001 * 2 1 4 4 C 1.50693 * 109.46994 * 120.00408 * 2 1 3 5 5 H 1.07999 * 120.00161 * 120.00210 * 4 2 1 6 6 C 1.37877 * 120.00287 * 299.99456 * 4 2 1 7 7 N 1.31514 * 119.99527 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00338 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46951 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47306 * 119.99933 * 8 6 4 11 11 H 1.48500 * 109.47339 * 240.00231 * 8 6 4 12 12 C 1.50696 * 109.46654 * 240.00462 * 2 1 3 13 13 O 1.21288 * 119.99784 * 267.34673 * 12 2 1 14 14 N 1.34775 * 120.00392 * 87.34554 * 12 2 1 15 15 C 1.46500 * 119.99858 * 354.42291 * 14 12 2 16 16 C 1.53002 * 109.46814 * 263.26221 * 15 14 12 17 17 H 1.08995 * 110.56471 * 52.61760 * 16 15 14 18 18 C 1.54508 * 110.51158 * 175.29867 * 16 15 14 19 19 C 1.54480 * 104.06333 * 118.64292 * 18 16 15 20 20 O 1.44423 * 104.80520 * 23.97967 * 19 18 16 21 21 C 1.44427 * 105.27187 * 319.48763 * 20 19 18 22 22 C 1.46496 * 120.00254 * 174.41500 * 14 12 2 23 23 C 1.53000 * 117.49914 * 17.38316 * 22 14 12 24 24 C 1.53001 * 117.50233 * 308.75814 * 22 14 12 25 25 H 1.09001 * 109.47297 * 51.24239 * 1 2 3 26 26 H 1.09001 * 109.47389 * 171.24550 * 1 2 3 27 27 H 1.09013 * 109.47092 * 291.24303 * 1 2 3 28 28 H 0.97010 * 119.99927 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47396 * 143.26144 * 15 14 12 30 30 H 1.09003 * 109.47320 * 23.25820 * 15 14 12 31 31 H 1.08998 * 110.51356 * 237.28632 * 18 16 15 32 32 H 1.09000 * 110.51156 * 359.85837 * 18 16 15 33 33 H 1.08997 * 110.37178 * 142.81273 * 19 18 16 34 34 H 1.08996 * 110.37087 * 265.14443 * 19 18 16 35 35 H 1.08997 * 110.37318 * 281.67646 * 21 20 19 36 36 H 1.09003 * 110.37135 * 159.34314 * 21 20 19 37 37 H 1.09006 * 115.55072 * 163.09100 * 22 14 12 38 38 H 1.08999 * 117.49727 * 359.97438 * 23 22 14 39 39 H 1.08999 * 117.50463 * 145.02094 * 23 22 14 40 40 H 1.08999 * 117.50365 * 214.97941 * 24 22 14 41 41 H 1.09008 * 117.49256 * 0.02562 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.1484 -2.2859 3.6036 10 1 3.1474 -0.1861 4.8160 11 1 1.1679 -1.5868 4.8164 12 6 2.0322 -0.7103 -1.2305 13 8 2.2802 -1.8968 -1.1871 14 7 2.2059 -0.0272 -2.3793 15 6 1.7921 1.3754 -2.4672 16 6 0.4012 1.4581 -3.0993 17 1 -0.2977 0.8080 -2.5731 18 6 -0.1088 2.9165 -3.0966 19 6 -0.2935 3.2524 -4.5930 20 8 -0.4768 1.9735 -5.2385 21 6 0.4644 1.0854 -4.5972 22 6 2.8085 -0.6872 -3.5401 23 6 2.8462 -2.2168 -3.5424 24 6 4.1345 -1.4201 -3.3267 25 1 -0.3634 0.6433 -0.8014 26 1 -0.3634 -1.0157 -0.1564 27 1 -0.3634 0.3724 0.9579 28 1 0.7083 1.1608 3.4845 29 1 2.5039 1.9264 -3.0818 30 1 1.7632 1.8090 -1.4676 31 1 -1.0600 2.9875 -2.5690 32 1 0.6288 3.5783 -2.6426 33 1 -1.1740 3.8790 -4.7354 34 1 0.5944 3.7503 -4.9825 35 1 1.4686 1.2508 -4.9874 36 1 0.1661 0.0471 -4.7428 37 1 2.6589 -0.1857 -4.4963 38 1 2.4231 -2.7319 -2.6800 39 1 2.7213 -2.7219 -4.5001 40 1 4.8571 -1.4010 -4.1425 41 1 4.5583 -1.4114 -2.3224 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596926955.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:11 Heat of formation + Delta-G solvation = -61.757615 kcal Electronic energy + Delta-G solvation = -21735.916510 eV Core-core repulsion = 18616.534819 eV Total energy + Delta-G solvation = -3119.381691 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.51270 -40.11505 -37.50102 -36.33906 -35.27301 -32.91582 -32.14361 -30.11202 -27.30943 -26.55001 -25.36261 -23.73607 -23.24990 -22.67047 -21.45695 -19.73802 -18.44279 -18.20933 -17.26694 -16.87712 -16.63866 -16.61992 -16.15679 -15.57064 -15.34377 -14.91901 -14.74909 -14.26567 -13.90263 -13.70909 -13.59919 -13.28186 -13.05082 -12.81157 -12.65358 -12.52669 -12.37617 -12.25931 -12.23940 -12.00890 -11.93403 -11.69195 -11.49280 -11.22501 -10.96760 -10.65183 -10.53507 -9.83848 -9.31826 -8.17105 -6.27802 1.37177 1.39866 1.52005 1.84107 2.07476 2.43476 3.00155 3.10889 3.14397 3.66817 3.70741 3.86028 3.93804 4.06394 4.17712 4.26403 4.29278 4.35321 4.43473 4.57907 4.63494 4.73595 4.78656 4.82419 4.86067 4.90821 4.94576 5.03265 5.03802 5.10880 5.19105 5.26724 5.41564 5.47258 5.70711 5.89144 5.90889 5.95603 6.18965 6.58153 6.78204 7.38023 7.53617 8.88068 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019400 B = 0.006475 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.985553 B = 4323.408840 C = 5450.325484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.030 3.970 3 H 0.044 0.956 4 C -0.526 4.526 5 H 0.041 0.959 6 C 0.023 3.977 7 N -0.907 5.907 8 Si 0.952 3.048 9 H -0.281 1.281 10 H -0.272 1.272 11 H -0.276 1.276 12 C 0.521 3.479 13 O -0.571 6.571 14 N -0.591 5.591 15 C 0.118 3.882 16 C -0.140 4.140 17 H 0.067 0.933 18 C -0.146 4.146 19 C 0.044 3.956 20 O -0.400 6.400 21 C 0.056 3.944 22 C 0.071 3.929 23 C -0.212 4.212 24 C -0.190 4.190 25 H 0.050 0.950 26 H 0.013 0.987 27 H 0.073 0.927 28 H 0.265 0.735 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.160 0.840 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.126 0.874 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.426 6.746 -14.829 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.009 3.991 3 H 0.062 0.938 4 C -0.564 4.564 5 H 0.059 0.941 6 C -0.177 4.177 7 N -0.546 5.546 8 Si 0.778 3.222 9 H -0.206 1.206 10 H -0.197 1.197 11 H -0.201 1.201 12 C 0.313 3.687 13 O -0.451 6.451 14 N -0.321 5.321 15 C -0.004 4.004 16 C -0.160 4.160 17 H 0.086 0.914 18 C -0.184 4.184 19 C -0.032 4.032 20 O -0.320 6.320 21 C -0.021 4.021 22 C -0.032 4.032 23 C -0.249 4.249 24 C -0.228 4.228 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.124 0.876 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.177 0.823 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.144 0.856 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.325 6.213 -14.833 16.085 hybrid contribution 0.349 -0.679 1.439 1.629 sum 0.674 5.534 -13.394 14.508 Atomic orbital electron populations 1.21610 0.95603 0.98194 1.02439 1.18814 0.94798 0.96034 0.89427 0.93818 1.21234 1.31639 1.12302 0.91262 0.94082 1.25536 0.95186 0.95730 1.01231 1.69936 1.36932 1.23441 1.24282 0.85588 0.78353 0.78614 0.79603 1.20639 1.19693 1.20114 1.21665 0.75156 0.86957 0.84900 1.90320 1.52719 1.17415 1.84608 1.47532 1.61120 1.12694 1.10781 1.21875 0.94911 0.80579 1.03031 1.23017 0.97416 0.98328 0.97211 0.91427 1.22944 1.02804 0.94720 0.97958 1.23585 1.03087 0.85972 0.90561 1.89091 1.60359 1.21814 1.60717 1.23564 0.93700 0.94622 0.90167 1.21991 0.98041 0.92925 0.90286 1.23971 1.01751 0.94465 1.04715 1.23206 0.91805 1.05648 1.02157 0.93113 0.96785 0.90848 0.92518 0.87619 0.89818 0.90744 0.88540 0.87990 0.90410 0.90297 0.90037 0.82334 0.87398 0.87211 0.85613 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 9.03 71.98 0.65 -5.03 16 2 C 0.03 1.50 1.87 -12.29 -0.02 1.48 16 3 H 0.04 2.18 6.11 -2.39 -0.01 2.17 16 4 C -0.53 -30.25 8.33 25.60 0.21 -30.04 16 5 H 0.04 2.54 7.08 -2.91 -0.02 2.52 16 6 C 0.02 1.25 5.27 84.65 0.45 1.70 16 7 N -0.91 -50.07 11.29 21.45 0.24 -49.83 16 8 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 9 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 12 C 0.52 23.74 6.48 87.66 0.57 24.30 16 13 O -0.57 -29.53 11.80 -3.05 -0.04 -29.57 16 14 N -0.59 -20.12 2.83 -797.83 -2.26 -22.38 16 15 C 0.12 3.17 4.49 86.38 0.39 3.56 16 16 C -0.14 -3.44 2.96 -9.78 -0.03 -3.47 16 17 H 0.07 2.06 6.09 -2.39 -0.01 2.04 16 18 C -0.15 -2.89 6.74 31.61 0.21 -2.67 16 19 C 0.04 0.77 7.63 72.49 0.55 1.33 16 20 O -0.40 -9.56 11.65 -148.98 -1.74 -11.30 16 21 C 0.06 1.23 5.91 72.49 0.43 1.66 16 22 C 0.07 2.03 6.01 44.99 0.27 2.30 16 23 C -0.21 -6.74 9.64 30.60 0.29 -6.44 16 24 C -0.19 -5.65 9.91 30.60 0.30 -5.35 16 25 H 0.05 2.01 5.35 -2.39 -0.01 2.00 16 26 H 0.01 0.65 8.12 -2.39 -0.02 0.63 16 27 H 0.07 3.80 5.88 -2.38 -0.01 3.79 16 28 H 0.27 13.84 8.31 -92.70 -0.77 13.07 16 29 H 0.11 2.12 7.95 -2.39 -0.02 2.10 16 30 H 0.08 2.59 5.55 -2.39 -0.01 2.58 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.10 1.63 7.73 -2.39 -0.02 1.61 16 33 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.40 6.42 -2.39 -0.02 1.38 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.16 3.20 6.11 -2.38 -0.01 3.18 16 38 H 0.11 4.52 4.93 -28.09 -0.14 4.38 16 39 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 41 H 0.06 2.20 7.85 -2.38 -0.02 2.18 16 Total: -1.00 -67.42 315.04 3.41 -64.01 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.90 Total: 19.06 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 4.28 Total: -16.66 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: -2.02 Total: -72.21 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -1.77 Total: -40.87 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -67.42 3.41 -64.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596926955.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.251 kcal (2) G-P(sol) polarization free energy of solvation -67.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds