Wall clock time and date at job start Mon Mar 30 2020 05:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47387 * 2 1 4 4 C 1.50705 * 109.46638 * 240.00232 * 2 1 3 5 5 H 1.08004 * 119.99858 * 240.00329 * 4 2 1 6 6 C 1.37879 * 120.00209 * 60.00254 * 4 2 1 7 7 N 1.31513 * 119.99891 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99955 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47074 * 60.00085 * 8 6 4 10 10 H 1.48506 * 109.46940 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47171 * 299.99941 * 8 6 4 12 12 C 1.50697 * 109.47071 * 120.00821 * 2 1 3 13 13 O 1.21275 * 120.00577 * 120.00125 * 12 2 1 14 14 N 1.34775 * 119.99723 * 299.99192 * 12 2 1 15 15 C 1.46499 * 120.00152 * 180.02562 * 14 12 2 16 16 H 1.08999 * 113.49367 * 50.02430 * 15 14 12 17 17 C 1.50658 * 114.49950 * 275.99739 * 15 14 12 18 18 H 1.08997 * 114.94004 * 172.76213 * 17 15 14 19 19 C 1.52678 * 126.48505 * 17.87351 * 17 15 14 20 20 C 1.56143 * 100.01316 * 233.63169 * 19 17 15 21 21 O 1.45501 * 105.72100 * 23.26603 * 20 19 17 22 22 C 1.38966 * 106.82988 * 12.34507 * 21 20 19 23 23 H 1.09006 * 109.47894 * 76.14519 * 22 21 20 24 24 C 1.48985 * 135.73742 * 229.06299 * 22 21 20 25 25 C 1.53002 * 114.57650 * 25.89287 * 24 22 21 26 26 C 1.53001 * 114.61942 * 252.04983 * 24 22 21 27 27 H 1.08994 * 109.47387 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46887 * 299.99795 * 1 2 3 29 29 H 1.08996 * 109.47375 * 59.99778 * 1 2 3 30 30 H 0.96999 * 120.00186 * 179.97438 * 7 6 4 31 31 H 0.97002 * 120.00415 * 0.02562 * 14 12 2 32 32 H 1.09005 * 111.30180 * 351.32673 * 19 17 15 33 33 H 1.09005 * 111.29933 * 115.93823 * 19 17 15 34 34 H 1.09006 * 110.20133 * 142.32607 * 20 19 17 35 35 H 1.08999 * 110.20174 * 264.19690 * 20 19 17 36 36 H 1.08998 * 109.47695 * 141.48492 * 25 24 22 37 37 H 1.09006 * 109.47491 * 261.48704 * 25 24 22 38 38 H 1.09002 * 109.47159 * 21.48680 * 25 24 22 39 39 H 1.08997 * 109.47030 * 328.59807 * 26 24 22 40 40 H 1.08996 * 109.47111 * 88.59836 * 26 24 22 41 41 H 1.08999 * 109.46818 * 208.60428 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6531 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1195 -4.0081 9 1 1.8277 -2.5197 -4.0083 10 1 1.8267 -0.4197 -5.2205 11 1 3.8073 -1.1190 -4.0079 12 6 2.0323 -0.7106 1.2303 13 8 2.7296 -1.6966 1.1191 14 7 1.7068 -0.2501 2.4545 15 6 2.1956 -0.9405 3.6506 16 1 3.2687 -1.1309 3.6344 17 6 1.3585 -2.1179 4.0782 18 1 1.7799 -2.7107 4.8901 19 6 0.3388 -2.8655 3.2224 20 6 -0.9108 -2.7830 4.1550 21 8 -0.6832 -1.6343 5.0185 22 6 0.3873 -0.9313 4.4791 23 1 0.0520 -0.3728 3.6051 24 6 1.6598 -0.3589 5.0015 25 6 2.2029 -1.0520 6.2527 26 6 1.6825 1.1684 5.0904 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.7087 1.1614 -3.4844 31 1 1.1490 0.5384 2.5436 32 1 0.1623 -2.3516 2.2774 33 1 0.6423 -3.8994 3.0576 34 1 -1.8137 -2.6351 3.5623 35 1 -0.9960 -3.6913 4.7514 36 1 3.2894 -1.1142 6.1910 37 1 1.9214 -0.4794 7.1365 38 1 1.7849 -2.0563 6.3222 39 1 1.0629 1.5877 4.2978 40 1 1.2942 1.4818 6.0594 41 1 2.7068 1.5236 4.9772 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597287793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:59 Heat of formation + Delta-G solvation = 8.045225 kcal Electronic energy + Delta-G solvation = -21904.416441 eV Core-core repulsion = 18788.061628 eV Total energy + Delta-G solvation = -3116.354813 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.35634 -38.43830 -36.75809 -33.74875 -32.94059 -31.66312 -30.35178 -28.81788 -27.62129 -25.17593 -24.68061 -23.07911 -22.60692 -20.17383 -19.39400 -18.65825 -16.85630 -16.41486 -16.00482 -15.70630 -15.43744 -14.57794 -14.42510 -14.25512 -13.87228 -13.57333 -13.40231 -12.88582 -12.61397 -12.47823 -12.30445 -11.80687 -11.60856 -11.58249 -11.36047 -11.17017 -11.02917 -10.80855 -10.73324 -10.66940 -10.33528 -10.27272 -9.97145 -9.58876 -9.04087 -9.00878 -8.63043 -8.39253 -8.33709 -6.04487 -4.07801 3.08512 3.35333 3.37939 3.42728 3.63510 3.67160 4.12304 4.45912 4.51650 4.73888 4.85668 4.89233 5.15793 5.28693 5.28793 5.32923 5.46918 5.54197 5.56900 5.72352 5.75820 5.79523 5.85311 5.90851 5.98332 6.02511 6.17414 6.24721 6.29168 6.41230 6.57674 6.78398 6.88895 7.04204 7.10437 7.44214 7.72761 7.96264 8.11047 8.40334 9.00884 9.20907 9.57910 11.03087 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.029158 B = 0.005336 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.067517 B = 5245.925830 C = 5428.556233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.052 0.948 4 C -0.501 4.501 5 H 0.074 0.926 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.522 3.478 13 O -0.537 6.537 14 N -0.729 5.729 15 C 0.157 3.843 16 H 0.094 0.906 17 C -0.195 4.195 18 H 0.123 0.877 19 C -0.136 4.136 20 C 0.054 3.946 21 O -0.367 6.367 22 C 0.030 3.970 23 H 0.088 0.912 24 C -0.057 4.057 25 C -0.128 4.128 26 C -0.140 4.140 27 H 0.030 0.970 28 H 0.010 0.990 29 H 0.094 0.906 30 H 0.261 0.739 31 H 0.397 0.603 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.592 -1.310 15.854 15.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.070 0.930 4 C -0.539 4.539 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.312 3.688 13 O -0.411 6.411 14 N -0.385 5.385 15 C 0.050 3.950 16 H 0.112 0.888 17 C -0.214 4.214 18 H 0.141 0.859 19 C -0.173 4.173 20 C -0.021 4.021 21 O -0.286 6.286 22 C -0.029 4.029 23 H 0.105 0.895 24 C -0.057 4.057 25 C -0.185 4.185 26 C -0.197 4.197 27 H 0.050 0.950 28 H 0.029 0.971 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.234 0.766 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.292 -1.871 15.758 15.921 hybrid contribution -0.018 -0.147 -0.988 0.999 sum -1.310 -2.018 14.770 14.965 Atomic orbital electron populations 1.21753 0.96610 0.99735 1.00923 1.18874 0.94066 0.96871 0.89270 0.92994 1.21089 1.31077 1.12833 0.88947 0.90835 1.24946 0.95095 0.95058 0.99104 1.69856 1.37015 1.23060 1.23667 0.86507 0.79288 0.79701 0.81645 1.20224 1.21374 1.20193 1.22001 0.78422 0.84346 0.84056 1.90540 1.37461 1.26585 1.86561 1.46251 1.55228 1.32269 1.04767 1.21312 0.97683 0.91577 0.84418 0.88826 1.24917 0.99358 0.95519 1.01648 0.85930 1.22508 0.94278 1.01705 0.98828 1.24140 0.98128 0.88162 0.91704 1.87780 1.50413 1.38833 1.51538 1.24061 0.85440 0.97097 0.96275 0.89507 1.22188 0.92596 0.95792 0.95169 1.21742 1.01159 1.00633 0.94957 1.21761 1.02483 0.93259 1.02224 0.95049 0.97110 0.88746 0.92893 0.76626 0.89885 0.90638 0.91434 0.90565 0.91673 0.91774 0.91179 0.92146 0.92021 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.87 37.16 0.33 -2.65 16 2 C 0.03 0.74 2.64 -92.92 -0.25 0.49 16 3 H 0.05 1.32 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -14.04 8.37 -34.44 -0.29 -14.33 16 5 H 0.07 2.18 6.75 -52.48 -0.35 1.82 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -24.96 11.32 55.43 0.63 -24.33 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.52 11.49 6.35 -10.99 -0.07 11.43 16 13 O -0.54 -13.56 15.45 5.56 0.09 -13.48 16 14 N -0.73 -12.33 3.74 -67.68 -0.25 -12.58 16 15 C 0.16 2.31 3.84 -81.52 -0.31 2.00 16 16 H 0.09 1.46 8.13 -51.93 -0.42 1.04 16 17 C -0.20 -2.77 4.26 -99.43 -0.42 -3.19 16 18 H 0.12 1.55 5.58 -51.93 -0.29 1.26 16 19 C -0.14 -2.03 6.69 -25.21 -0.17 -2.20 16 20 C 0.05 0.71 7.87 38.84 0.31 1.01 16 21 O -0.37 -5.39 11.33 -29.81 -0.34 -5.73 16 22 C 0.03 0.41 4.01 -39.99 -0.16 0.25 16 23 H 0.09 1.31 5.46 -51.93 -0.28 1.02 16 24 C -0.06 -0.67 1.58 -165.08 -0.26 -0.93 16 25 C -0.13 -1.25 8.80 37.16 0.33 -0.92 16 26 C -0.14 -1.45 9.07 37.16 0.34 -1.11 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.01 0.19 7.56 -51.93 -0.39 -0.20 16 29 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.40 6.00 5.69 -40.82 -0.23 5.77 16 32 H 0.08 1.47 7.02 -51.93 -0.36 1.11 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.56 7.96 -51.93 -0.41 0.15 16 38 H 0.07 0.71 5.94 -51.93 -0.31 0.40 16 39 H 0.06 0.63 6.81 -51.93 -0.35 0.28 16 40 H 0.06 0.57 8.02 -51.93 -0.42 0.15 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 316.64 15.07 4.77 4.77 Total: -1.00 -30.57 316.64 -7.09 -37.66 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.24 Total: 5.61 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -0.72 Total: -8.63 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.37 Total: -36.91 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.25 Total: -19.21 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.57 -7.09 -37.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597287793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.707 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds