Wall clock time and date at job start Mon Mar 30 2020 05:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47387 * 2 1 4 4 C 1.50705 * 109.46638 * 240.00232 * 2 1 3 5 5 H 1.08004 * 119.99858 * 240.00329 * 4 2 1 6 6 C 1.37879 * 120.00209 * 60.00254 * 4 2 1 7 7 N 1.31513 * 119.99891 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99955 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47074 * 60.00085 * 8 6 4 10 10 H 1.48506 * 109.46940 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47171 * 299.99941 * 8 6 4 12 12 C 1.50697 * 109.47071 * 120.00821 * 2 1 3 13 13 O 1.21275 * 120.00577 * 120.00125 * 12 2 1 14 14 N 1.34775 * 119.99723 * 299.99192 * 12 2 1 15 15 C 1.46499 * 120.00152 * 180.02562 * 14 12 2 16 16 H 1.08999 * 113.49367 * 50.02430 * 15 14 12 17 17 C 1.50658 * 114.49950 * 275.99739 * 15 14 12 18 18 H 1.08997 * 114.94004 * 172.76213 * 17 15 14 19 19 C 1.52678 * 126.48505 * 17.87351 * 17 15 14 20 20 C 1.56143 * 100.01316 * 233.63169 * 19 17 15 21 21 O 1.45501 * 105.72100 * 23.26603 * 20 19 17 22 22 C 1.38966 * 106.82988 * 12.34507 * 21 20 19 23 23 H 1.09006 * 109.47894 * 76.14519 * 22 21 20 24 24 C 1.48985 * 135.73742 * 229.06299 * 22 21 20 25 25 C 1.53002 * 114.57650 * 25.89287 * 24 22 21 26 26 C 1.53001 * 114.61942 * 252.04983 * 24 22 21 27 27 H 1.08994 * 109.47387 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46887 * 299.99795 * 1 2 3 29 29 H 1.08996 * 109.47375 * 59.99778 * 1 2 3 30 30 H 0.96999 * 120.00186 * 179.97438 * 7 6 4 31 31 H 0.97002 * 120.00415 * 0.02562 * 14 12 2 32 32 H 1.09005 * 111.30180 * 351.32673 * 19 17 15 33 33 H 1.09005 * 111.29933 * 115.93823 * 19 17 15 34 34 H 1.09006 * 110.20133 * 142.32607 * 20 19 17 35 35 H 1.08999 * 110.20174 * 264.19690 * 20 19 17 36 36 H 1.08998 * 109.47695 * 141.48492 * 25 24 22 37 37 H 1.09006 * 109.47491 * 261.48704 * 25 24 22 38 38 H 1.09002 * 109.47159 * 21.48680 * 25 24 22 39 39 H 1.08997 * 109.47030 * 328.59807 * 26 24 22 40 40 H 1.08996 * 109.47111 * 88.59836 * 26 24 22 41 41 H 1.08999 * 109.46818 * 208.60428 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6531 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3223 -1.1195 -4.0081 9 1 1.8277 -2.5197 -4.0083 10 1 1.8267 -0.4197 -5.2205 11 1 3.8073 -1.1190 -4.0079 12 6 2.0323 -0.7106 1.2303 13 8 2.7296 -1.6966 1.1191 14 7 1.7068 -0.2501 2.4545 15 6 2.1956 -0.9405 3.6506 16 1 3.2687 -1.1309 3.6344 17 6 1.3585 -2.1179 4.0782 18 1 1.7799 -2.7107 4.8901 19 6 0.3388 -2.8655 3.2224 20 6 -0.9108 -2.7830 4.1550 21 8 -0.6832 -1.6343 5.0185 22 6 0.3873 -0.9313 4.4791 23 1 0.0520 -0.3728 3.6051 24 6 1.6598 -0.3589 5.0015 25 6 2.2029 -1.0520 6.2527 26 6 1.6825 1.1684 5.0904 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.7087 1.1614 -3.4844 31 1 1.1490 0.5384 2.5436 32 1 0.1623 -2.3516 2.2774 33 1 0.6423 -3.8994 3.0576 34 1 -1.8137 -2.6351 3.5623 35 1 -0.9960 -3.6913 4.7514 36 1 3.2894 -1.1142 6.1910 37 1 1.9214 -0.4794 7.1365 38 1 1.7849 -2.0563 6.3222 39 1 1.0629 1.5877 4.2978 40 1 1.2942 1.4818 6.0594 41 1 2.7068 1.5236 4.9772 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597287793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:58 Heat of formation + Delta-G solvation = -11.277116 kcal Electronic energy + Delta-G solvation = -21905.254320 eV Core-core repulsion = 18788.061628 eV Total energy + Delta-G solvation = -3117.192692 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.49451 -40.12569 -37.92093 -35.77507 -34.41971 -32.86607 -32.22718 -29.84733 -28.49436 -27.23193 -25.96035 -24.33560 -24.13814 -21.54416 -20.86955 -19.80563 -18.33758 -18.16834 -17.58948 -16.92801 -16.79036 -16.42765 -15.80088 -15.49332 -15.14100 -14.98484 -14.61260 -14.39703 -14.18272 -13.59274 -13.48766 -13.06443 -13.02430 -12.84517 -12.74730 -12.61105 -12.54585 -12.40429 -12.37337 -12.15590 -12.02516 -11.75233 -11.40506 -11.06797 -10.71065 -10.59485 -10.31973 -10.18247 -9.77199 -8.16012 -6.26403 1.40661 1.41818 1.50375 1.91590 2.00107 2.22752 2.46468 3.03178 3.13703 3.39835 3.71228 3.74458 4.00269 4.06345 4.21711 4.29690 4.32597 4.44243 4.55350 4.69749 4.72392 4.77587 4.80623 4.84158 4.89360 4.93936 4.98040 4.99392 5.03610 5.12904 5.17738 5.32931 5.39428 5.46462 5.61936 5.73203 5.91325 6.01797 6.18799 6.67931 6.83690 7.38980 7.53169 8.89677 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.029158 B = 0.005336 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.067517 B = 5245.925830 C = 5428.556233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.025 3.975 3 H 0.040 0.960 4 C -0.528 4.528 5 H 0.049 0.951 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.275 1.275 11 H -0.276 1.276 12 C 0.528 3.472 13 O -0.576 6.576 14 N -0.708 5.708 15 C 0.137 3.863 16 H 0.086 0.914 17 C -0.201 4.201 18 H 0.144 0.856 19 C -0.141 4.141 20 C 0.059 3.941 21 O -0.375 6.375 22 C 0.032 3.968 23 H 0.070 0.930 24 C -0.032 4.032 25 C -0.127 4.127 26 C -0.143 4.143 27 H 0.021 0.979 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.265 0.735 31 H 0.407 0.593 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.808 -1.150 17.664 17.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.004 3.996 3 H 0.058 0.942 4 C -0.566 4.566 5 H 0.067 0.933 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.200 1.200 11 H -0.202 1.202 12 C 0.317 3.683 13 O -0.454 6.454 14 N -0.363 5.363 15 C 0.031 3.969 16 H 0.104 0.896 17 C -0.220 4.220 18 H 0.162 0.838 19 C -0.179 4.179 20 C -0.016 4.016 21 O -0.294 6.294 22 C -0.027 4.027 23 H 0.088 0.912 24 C -0.033 4.033 25 C -0.184 4.184 26 C -0.200 4.200 27 H 0.041 0.959 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.246 0.754 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.534 -1.677 17.606 17.753 hybrid contribution 0.038 -0.195 -1.526 1.539 sum -1.496 -1.872 16.080 16.258 Atomic orbital electron populations 1.21541 0.95293 0.99237 1.01470 1.18798 0.95110 0.95972 0.89742 0.94172 1.21235 1.31629 1.12733 0.91014 0.93270 1.25588 0.95186 0.95733 1.01408 1.69937 1.37138 1.23562 1.24374 0.85662 0.78686 0.78699 0.78891 1.20237 1.19973 1.20152 1.21446 0.78095 0.83702 0.85047 1.90513 1.39382 1.28213 1.87293 1.45880 1.54109 1.32101 1.04189 1.21563 0.97419 0.92952 0.84976 0.89585 1.25106 0.99228 0.95775 1.01908 0.83823 1.22492 0.95950 1.01492 0.97943 1.24204 0.97059 0.88779 0.91579 1.87764 1.50656 1.39262 1.51748 1.24051 0.85520 0.96828 0.96283 0.91219 1.22137 0.90275 0.96948 0.93920 1.21787 1.01922 1.00521 0.94181 1.21816 1.03109 0.91886 1.03153 0.95949 0.93592 0.90997 0.92595 0.75423 0.93275 0.90463 0.91141 0.88021 0.90403 0.90002 0.91323 0.92624 0.90168 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.87 71.98 0.64 -4.73 16 2 C 0.02 1.25 2.64 -12.28 -0.03 1.22 16 3 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.53 -30.46 8.37 25.60 0.21 -30.25 16 5 H 0.05 3.03 6.75 -2.91 -0.02 3.01 16 6 C 0.02 1.12 5.30 84.66 0.45 1.57 16 7 N -0.91 -51.09 11.32 21.45 0.24 -50.85 16 8 Si 0.95 44.93 29.54 68.60 2.03 46.95 16 9 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 C 0.53 23.80 6.35 87.66 0.56 24.36 16 13 O -0.58 -30.06 15.45 -3.01 -0.05 -30.10 16 14 N -0.71 -23.87 3.74 -486.44 -1.82 -25.69 16 15 C 0.14 3.90 3.84 36.19 0.14 4.04 16 16 H 0.09 2.63 8.13 -2.39 -0.02 2.61 16 17 C -0.20 -5.46 4.26 -16.50 -0.07 -5.53 16 18 H 0.14 3.30 5.58 -2.39 -0.01 3.29 16 19 C -0.14 -4.17 6.69 31.58 0.21 -3.96 16 20 C 0.06 1.45 7.87 73.07 0.58 2.02 16 21 O -0.38 -10.21 11.33 -129.59 -1.47 -11.68 16 22 C 0.03 0.83 4.01 22.01 0.09 0.91 16 23 H 0.07 2.02 5.46 -2.38 -0.01 2.01 16 24 C -0.03 -0.68 1.58 -59.03 -0.09 -0.77 16 25 C -0.13 -2.05 8.80 71.98 0.63 -1.42 16 26 C -0.14 -2.54 9.07 71.98 0.65 -1.89 16 27 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 1.71 7.56 -2.39 -0.02 1.70 16 29 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 30 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 31 H 0.41 12.05 5.69 -92.71 -0.53 11.52 16 32 H 0.05 1.78 7.02 -2.38 -0.02 1.76 16 33 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.07 1.67 8.14 -2.38 -0.02 1.66 16 35 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.09 7.96 -2.38 -0.02 1.07 16 38 H 0.07 1.15 5.94 -2.39 -0.01 1.14 16 39 H 0.05 1.04 6.81 -2.39 -0.02 1.03 16 40 H 0.08 1.18 8.02 -2.39 -0.02 1.16 16 41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -66.77 316.64 3.40 -63.37 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.50 Total: 22.41 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 3.96 Total: -14.42 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -1.58 Total: -76.54 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -1.52 Total: -41.78 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -66.77 3.40 -63.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597287793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.096 kcal (2) G-P(sol) polarization free energy of solvation -66.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds