Wall clock time and date at job start Mon Mar 30 2020 05:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46985 * 2 1 4 4 C 1.50698 * 109.46905 * 240.00529 * 2 1 3 5 5 H 1.08001 * 119.99810 * 275.10348 * 4 2 1 6 6 C 1.37873 * 120.00684 * 95.10625 * 4 2 1 7 7 N 1.31508 * 120.00610 * 184.90923 * 6 4 2 8 8 Si 1.86807 * 119.99462 * 4.90586 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.82163 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.81789 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.82102 * 8 6 4 12 12 C 1.50699 * 109.47208 * 120.00298 * 2 1 3 13 13 O 1.21277 * 120.00026 * 119.99724 * 12 2 1 14 14 N 1.34779 * 120.00008 * 299.99795 * 12 2 1 15 15 C 1.46497 * 120.00013 * 179.97438 * 14 12 2 16 16 H 1.09009 * 112.78922 * 24.05638 * 15 14 12 17 17 C 1.53741 * 113.53944 * 253.01376 * 15 14 12 18 18 H 1.08998 * 116.37175 * 150.82172 * 17 15 14 19 19 C 1.54497 * 112.85632 * 13.54210 * 17 15 14 20 20 C 1.54445 * 104.13658 * 267.07322 * 19 17 15 21 21 O 1.44394 * 104.80623 * 24.13172 * 20 19 17 22 22 C 1.44254 * 105.40216 * 319.42337 * 21 20 19 23 23 H 1.09002 * 115.51999 * 270.85897 * 22 21 20 24 24 C 1.53572 * 113.40436 * 133.68202 * 22 21 20 25 25 C 1.53002 * 113.54080 * 164.81672 * 24 22 21 26 26 C 1.52997 * 113.53964 * 34.15409 * 24 22 21 27 27 H 1.08997 * 109.46789 * 55.08062 * 1 2 3 28 28 H 1.08997 * 109.46750 * 295.08513 * 1 2 3 29 29 H 1.08995 * 109.47107 * 175.08432 * 1 2 3 30 30 H 0.97003 * 120.00265 * 179.97438 * 7 6 4 31 31 H 0.97002 * 120.00009 * 0.02562 * 14 12 2 32 32 H 1.08998 * 110.50039 * 25.74008 * 19 17 15 33 33 H 1.09006 * 110.49395 * 148.40924 * 19 17 15 34 34 H 1.08993 * 110.37237 * 142.96544 * 20 19 17 35 35 H 1.09009 * 110.37365 * 265.18891 * 20 19 17 36 36 H 1.08994 * 109.47262 * 157.99081 * 25 24 22 37 37 H 1.08994 * 109.46767 * 277.99286 * 25 24 22 38 38 H 1.09001 * 109.46423 * 37.98778 * 25 24 22 39 39 H 1.08998 * 109.47300 * 322.01143 * 26 24 22 40 40 H 1.09004 * 109.47433 * 82.00956 * 26 24 22 41 41 H 1.09000 * 109.47633 * 202.01007 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1338 -1.7855 -1.2297 6 6 2.3623 0.0124 -2.3574 7 7 2.7081 -0.6126 -3.4616 8 14 2.3182 1.8794 -2.3156 9 1 3.6039 2.3931 -1.7785 10 1 2.1127 2.4006 -3.6909 11 1 1.2029 2.3289 -1.4442 12 6 2.0324 -0.7105 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4546 15 6 2.1947 -0.9410 3.6507 16 1 3.1023 -1.5157 3.4656 17 6 1.1042 -1.7339 4.3895 18 1 1.4349 -2.6145 4.9401 19 6 -0.1812 -1.9110 3.5509 20 6 -1.0709 -0.7194 3.9680 21 8 -0.1469 0.2798 4.4507 22 6 0.8397 -0.4468 5.2120 23 1 0.6096 -0.5848 6.2685 24 6 2.2837 -0.0356 4.8889 25 6 3.3021 -0.5156 5.9249 26 6 2.4351 1.4488 4.5507 27 1 -0.3633 0.5883 -0.8426 28 1 -0.3633 0.4357 0.9307 29 1 -0.3633 -1.0238 -0.0881 30 1 2.9399 -0.1042 -4.2545 31 1 1.1489 0.5384 2.5436 32 1 0.0477 -1.8621 2.4863 33 1 -0.6688 -2.8550 3.7945 34 1 -1.6248 -0.3405 3.1092 35 1 -1.7578 -1.0176 4.7601 36 1 4.2932 -0.5473 5.4725 37 1 3.3108 0.1714 6.7711 38 1 3.0276 -1.5127 6.2692 39 1 1.5754 1.7781 3.9671 40 1 2.4917 2.0277 5.4726 41 1 3.3463 1.5984 3.9713 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597287794.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:01 Heat of formation + Delta-G solvation = -61.062022 kcal Electronic energy + Delta-G solvation = -22097.927713 eV Core-core repulsion = 18978.576186 eV Total energy + Delta-G solvation = -3119.351528 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.53808 -38.35092 -36.09642 -33.60636 -32.92096 -31.82236 -30.99717 -28.88156 -27.33600 -25.22822 -24.91773 -23.11864 -22.24557 -20.54979 -19.24739 -18.55871 -17.05579 -16.59505 -15.97106 -15.87151 -15.14531 -15.00884 -14.58588 -14.09488 -13.62839 -13.36260 -13.17859 -12.90946 -12.69704 -12.44675 -12.37643 -12.22724 -12.12617 -11.81836 -11.38163 -11.16544 -11.04919 -11.01184 -10.84830 -10.72860 -10.37798 -10.25102 -10.03232 -9.80151 -9.52144 -9.13733 -8.64788 -8.49691 -8.37897 -6.04207 -4.03143 3.26695 3.33744 3.35766 3.55289 3.64928 3.87021 4.23099 4.40860 4.58591 4.74119 4.86938 5.02861 5.10254 5.18967 5.26892 5.27543 5.36330 5.56247 5.58366 5.65302 5.71100 5.81066 5.82202 5.87136 5.97110 6.00650 6.15308 6.19373 6.25569 6.30528 6.38411 6.46301 6.56680 6.80746 6.87431 7.18368 7.20801 7.59740 8.28123 8.59092 9.11349 9.23906 9.55944 11.09092 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.025655 B = 0.006124 C = 0.005916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.157956 B = 4570.832199 C = 4731.489180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.004 4.004 3 H 0.053 0.947 4 C -0.493 4.493 5 H 0.085 0.915 6 C 0.071 3.929 7 N -0.896 5.896 8 Si 0.870 3.130 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.264 1.264 12 C 0.519 3.481 13 O -0.531 6.531 14 N -0.721 5.721 15 C 0.145 3.855 16 H 0.100 0.900 17 C -0.156 4.156 18 H 0.110 0.890 19 C -0.146 4.146 20 C 0.050 3.950 21 O -0.357 6.357 22 C 0.056 3.944 23 H 0.088 0.912 24 C -0.090 4.090 25 C -0.124 4.124 26 C -0.132 4.132 27 H 0.053 0.947 28 H 0.027 0.973 29 H 0.051 0.949 30 H 0.264 0.736 31 H 0.400 0.600 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.339 2.601 19.661 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.026 4.026 3 H 0.071 0.929 4 C -0.531 4.531 5 H 0.103 0.897 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.698 3.302 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.189 1.189 12 C 0.308 3.692 13 O -0.406 6.406 14 N -0.376 5.376 15 C 0.038 3.962 16 H 0.118 0.882 17 C -0.176 4.176 18 H 0.128 0.872 19 C -0.184 4.184 20 C -0.026 4.026 21 O -0.276 6.276 22 C -0.002 4.002 23 H 0.105 0.895 24 C -0.091 4.091 25 C -0.181 4.181 26 C -0.189 4.189 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.237 0.763 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.777 2.139 19.274 19.972 hybrid contribution -0.304 1.101 0.022 1.142 sum -5.081 3.240 19.296 20.215 Atomic orbital electron populations 1.21957 0.96915 1.01196 0.99093 1.19330 0.93992 0.96950 0.92337 0.92911 1.20740 1.42862 0.96133 0.93371 0.89671 1.25022 0.94702 0.97947 0.95365 1.69882 1.46173 1.35638 1.01661 0.86976 0.79031 0.86830 0.77410 1.20147 1.21292 1.18912 1.21777 0.78908 0.84525 0.84020 1.90571 1.37050 1.26377 1.86555 1.46133 1.54674 1.32312 1.04493 1.21686 0.96825 0.92972 0.84755 0.88239 1.24513 0.97450 0.97704 0.97915 0.87172 1.22829 0.94766 0.98344 1.02451 1.23453 0.92289 0.88369 0.98509 1.88953 1.39010 1.30153 1.69437 1.24151 0.89031 0.92016 0.94955 0.89468 1.22219 0.93677 0.96860 0.96329 1.21509 0.98164 1.01004 0.97472 1.21562 1.02462 0.93589 1.01330 0.92755 0.95428 0.93024 0.92593 0.76271 0.89363 0.91204 0.88964 0.92689 0.91506 0.92005 0.92195 0.91469 0.92802 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.12 37.16 0.34 -2.34 16 2 C 0.00 -0.10 2.30 -92.92 -0.21 -0.31 16 3 H 0.05 1.22 5.29 -51.93 -0.27 0.95 16 4 C -0.49 -14.24 8.36 -34.44 -0.29 -14.53 16 5 H 0.09 2.79 7.61 -52.49 -0.40 2.39 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 7 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 8 Si 0.87 21.20 26.99 -169.99 -4.59 16.61 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.26 -5.96 6.82 56.52 0.39 -5.57 16 12 C 0.52 11.50 6.43 -10.98 -0.07 11.43 16 13 O -0.53 -13.87 15.37 5.56 0.09 -13.78 16 14 N -0.72 -12.31 3.01 -53.10 -0.16 -12.47 16 15 C 0.14 2.13 3.66 -67.21 -0.25 1.89 16 16 H 0.10 1.66 7.41 -51.92 -0.38 1.27 16 17 C -0.16 -1.91 4.67 -88.38 -0.41 -2.33 16 18 H 0.11 1.18 8.04 -51.93 -0.42 0.76 16 19 C -0.15 -1.86 6.26 -25.19 -0.16 -2.02 16 20 C 0.05 0.57 7.61 37.92 0.29 0.86 16 21 O -0.36 -4.53 8.50 -35.23 -0.30 -4.83 16 22 C 0.06 0.64 4.72 -25.37 -0.12 0.52 16 23 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 24 C -0.09 -1.04 1.31 -153.87 -0.20 -1.24 16 25 C -0.12 -1.14 9.08 37.16 0.34 -0.80 16 26 C -0.13 -1.57 8.46 37.16 0.31 -1.25 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.03 0.45 7.43 -51.93 -0.39 0.07 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.40 6.35 5.24 -40.82 -0.21 6.14 16 32 H 0.09 1.40 6.46 -51.93 -0.34 1.07 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.49 7.65 -51.93 -0.40 0.09 16 39 H 0.07 0.86 5.75 -51.93 -0.30 0.56 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 316.91 15.07 4.78 4.78 Total: -1.00 -32.71 316.91 -6.43 -39.14 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.49 Total: 5.70 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -0.53 Total: -8.16 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.61 Total: -39.46 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.21 Total: -18.61 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.59 Total: 16.61 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.71 -6.43 -39.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597287794.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.922 kcal (2) G-P(sol) polarization free energy of solvation -32.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds