Wall clock time and date at job start Mon Mar 30 2020 05:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46985 * 2 1 4 4 C 1.50698 * 109.46905 * 240.00529 * 2 1 3 5 5 H 1.08001 * 119.99810 * 275.10348 * 4 2 1 6 6 C 1.37873 * 120.00684 * 95.10625 * 4 2 1 7 7 N 1.31508 * 120.00610 * 184.90923 * 6 4 2 8 8 Si 1.86807 * 119.99462 * 4.90586 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.82163 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.81789 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.82102 * 8 6 4 12 12 C 1.50699 * 109.47208 * 120.00298 * 2 1 3 13 13 O 1.21277 * 120.00026 * 119.99724 * 12 2 1 14 14 N 1.34779 * 120.00008 * 299.99795 * 12 2 1 15 15 C 1.46497 * 120.00013 * 179.97438 * 14 12 2 16 16 H 1.09009 * 112.78922 * 24.05638 * 15 14 12 17 17 C 1.53741 * 113.53944 * 253.01376 * 15 14 12 18 18 H 1.08998 * 116.37175 * 150.82172 * 17 15 14 19 19 C 1.54497 * 112.85632 * 13.54210 * 17 15 14 20 20 C 1.54445 * 104.13658 * 267.07322 * 19 17 15 21 21 O 1.44394 * 104.80623 * 24.13172 * 20 19 17 22 22 C 1.44254 * 105.40216 * 319.42337 * 21 20 19 23 23 H 1.09002 * 115.51999 * 270.85897 * 22 21 20 24 24 C 1.53572 * 113.40436 * 133.68202 * 22 21 20 25 25 C 1.53002 * 113.54080 * 164.81672 * 24 22 21 26 26 C 1.52997 * 113.53964 * 34.15409 * 24 22 21 27 27 H 1.08997 * 109.46789 * 55.08062 * 1 2 3 28 28 H 1.08997 * 109.46750 * 295.08513 * 1 2 3 29 29 H 1.08995 * 109.47107 * 175.08432 * 1 2 3 30 30 H 0.97003 * 120.00265 * 179.97438 * 7 6 4 31 31 H 0.97002 * 120.00009 * 0.02562 * 14 12 2 32 32 H 1.08998 * 110.50039 * 25.74008 * 19 17 15 33 33 H 1.09006 * 110.49395 * 148.40924 * 19 17 15 34 34 H 1.08993 * 110.37237 * 142.96544 * 20 19 17 35 35 H 1.09009 * 110.37365 * 265.18891 * 20 19 17 36 36 H 1.08994 * 109.47262 * 157.99081 * 25 24 22 37 37 H 1.08994 * 109.46767 * 277.99286 * 25 24 22 38 38 H 1.09001 * 109.46423 * 37.98778 * 25 24 22 39 39 H 1.08998 * 109.47300 * 322.01143 * 26 24 22 40 40 H 1.09004 * 109.47433 * 82.00956 * 26 24 22 41 41 H 1.09000 * 109.47633 * 202.01007 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1338 -1.7855 -1.2297 6 6 2.3623 0.0124 -2.3574 7 7 2.7081 -0.6126 -3.4616 8 14 2.3182 1.8794 -2.3156 9 1 3.6039 2.3931 -1.7785 10 1 2.1127 2.4006 -3.6909 11 1 1.2029 2.3289 -1.4442 12 6 2.0324 -0.7105 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4546 15 6 2.1947 -0.9410 3.6507 16 1 3.1023 -1.5157 3.4656 17 6 1.1042 -1.7339 4.3895 18 1 1.4349 -2.6145 4.9401 19 6 -0.1812 -1.9110 3.5509 20 6 -1.0709 -0.7194 3.9680 21 8 -0.1469 0.2798 4.4507 22 6 0.8397 -0.4468 5.2120 23 1 0.6096 -0.5848 6.2685 24 6 2.2837 -0.0356 4.8889 25 6 3.3021 -0.5156 5.9249 26 6 2.4351 1.4488 4.5507 27 1 -0.3633 0.5883 -0.8426 28 1 -0.3633 0.4357 0.9307 29 1 -0.3633 -1.0238 -0.0881 30 1 2.9399 -0.1042 -4.2545 31 1 1.1489 0.5384 2.5436 32 1 0.0477 -1.8621 2.4863 33 1 -0.6688 -2.8550 3.7945 34 1 -1.6248 -0.3405 3.1092 35 1 -1.7578 -1.0176 4.7601 36 1 4.2932 -0.5473 5.4725 37 1 3.3108 0.1714 6.7711 38 1 3.0276 -1.5127 6.2692 39 1 1.5754 1.7781 3.9671 40 1 2.4917 2.0277 5.4726 41 1 3.3463 1.5984 3.9713 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597287794.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:00 Heat of formation + Delta-G solvation = -83.481818 kcal Electronic energy + Delta-G solvation = -22098.899909 eV Core-core repulsion = 18978.576186 eV Total energy + Delta-G solvation = -3120.323723 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.59479 -40.04896 -37.09267 -35.63291 -34.44565 -33.20451 -32.63832 -29.80937 -28.17669 -27.25511 -26.18047 -24.03189 -23.90000 -21.61065 -20.88244 -19.71421 -19.12749 -17.88819 -17.22179 -16.91742 -16.68128 -16.26519 -15.89638 -15.84706 -14.93824 -14.73435 -14.43939 -14.36740 -14.09932 -13.84131 -13.67458 -13.21337 -13.09845 -13.01769 -12.96913 -12.76076 -12.62006 -12.18431 -12.07346 -11.91906 -11.84403 -11.77174 -11.38053 -11.27610 -11.00998 -10.77017 -10.54557 -10.32582 -9.83069 -8.28407 -6.34468 1.33959 1.36647 1.46875 1.89967 2.33399 2.34744 2.74032 3.08594 3.24550 3.59790 3.71769 3.96017 4.14126 4.19310 4.25010 4.28214 4.38181 4.43951 4.44395 4.59148 4.70910 4.74558 4.78358 4.82390 4.85664 4.95314 4.98520 5.02214 5.10355 5.14058 5.17190 5.22536 5.40045 5.45366 5.50075 5.56161 5.70169 5.97779 6.25732 6.67452 6.88317 7.26965 7.56408 8.89523 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.025655 B = 0.006124 C = 0.005916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.157956 B = 4570.832199 C = 4731.489180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.009 4.009 3 H 0.066 0.934 4 C -0.504 4.504 5 H 0.023 0.977 6 C 0.007 3.993 7 N -0.950 5.950 8 Si 0.944 3.056 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.226 1.226 12 C 0.521 3.479 13 O -0.585 6.585 14 N -0.697 5.697 15 C 0.120 3.880 16 H 0.071 0.929 17 C -0.154 4.154 18 H 0.129 0.871 19 C -0.151 4.151 20 C 0.053 3.947 21 O -0.372 6.372 22 C 0.069 3.931 23 H 0.118 0.882 24 C -0.079 4.079 25 C -0.122 4.122 26 C -0.133 4.133 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.267 0.733 31 H 0.410 0.590 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.934 5.127 22.978 24.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.031 4.031 3 H 0.084 0.916 4 C -0.542 4.542 5 H 0.041 0.959 6 C -0.190 4.190 7 N -0.590 5.590 8 Si 0.766 3.234 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.149 1.149 12 C 0.309 3.691 13 O -0.464 6.464 14 N -0.350 5.350 15 C 0.013 3.987 16 H 0.089 0.911 17 C -0.174 4.174 18 H 0.147 0.853 19 C -0.189 4.189 20 C -0.023 4.023 21 O -0.291 6.291 22 C 0.011 3.989 23 H 0.136 0.864 24 C -0.080 4.080 25 C -0.179 4.179 26 C -0.191 4.191 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.249 0.751 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.412 4.688 22.659 24.011 hybrid contribution 0.221 0.175 -0.981 1.020 sum -6.191 4.863 21.679 23.064 Atomic orbital electron populations 1.21805 0.93918 1.01079 1.01389 1.19314 0.96231 0.96754 0.90760 0.91618 1.20849 1.43414 0.93749 0.96225 0.95909 1.26043 0.94032 1.04434 0.94450 1.70066 1.47929 1.38291 1.02740 0.85799 0.80449 0.78779 0.78363 1.19573 1.20834 1.14898 1.21452 0.78431 0.83830 0.85366 1.90552 1.39697 1.28723 1.87403 1.45763 1.53442 1.31977 1.03810 1.22021 0.96950 0.94768 0.84939 0.91058 1.24559 0.96047 0.99009 0.97745 0.85347 1.22834 0.95677 1.00169 1.00178 1.23523 0.92048 0.87273 0.99488 1.88935 1.39479 1.30804 1.69837 1.24215 0.88332 0.90342 0.95992 0.86440 1.22254 0.95054 0.96027 0.94672 1.21536 0.96880 1.02280 0.97245 1.21576 1.01359 0.93998 1.02133 0.92451 0.91270 0.94188 0.92399 0.75129 0.93141 0.89680 0.88838 0.90098 0.92352 0.89817 0.90933 0.92384 0.90588 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.82 9.12 71.98 0.66 -4.17 16 2 C -0.01 -0.42 2.30 -12.29 -0.03 -0.45 16 3 H 0.07 2.92 5.29 -2.39 -0.01 2.91 16 4 C -0.50 -30.56 8.36 25.60 0.21 -30.35 16 5 H 0.02 1.61 7.61 -2.91 -0.02 1.59 16 6 C 0.01 0.42 5.47 84.65 0.46 0.88 16 7 N -0.95 -61.58 13.96 21.44 0.30 -61.28 16 8 Si 0.94 43.51 26.99 68.60 1.85 45.36 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.23 -8.99 6.82 99.48 0.68 -8.32 16 12 C 0.52 23.69 6.43 87.66 0.56 24.25 16 13 O -0.58 -32.45 15.37 -3.02 -0.05 -32.50 16 14 N -0.70 -23.42 3.01 -440.31 -1.33 -24.74 16 15 C 0.12 3.43 3.66 45.46 0.17 3.60 16 16 H 0.07 2.46 7.41 -2.38 -0.02 2.44 16 17 C -0.15 -3.45 4.67 -9.35 -0.04 -3.49 16 18 H 0.13 2.41 8.04 -2.39 -0.02 2.39 16 19 C -0.15 -3.58 6.26 31.59 0.20 -3.38 16 20 C 0.05 1.03 7.61 72.47 0.55 1.58 16 21 O -0.37 -8.05 8.50 -148.98 -1.27 -9.31 16 22 C 0.07 1.28 4.72 31.48 0.15 1.43 16 23 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 24 C -0.08 -1.61 1.31 -51.77 -0.07 -1.68 16 25 C -0.12 -1.87 9.08 71.98 0.65 -1.21 16 26 C -0.13 -2.79 8.46 71.98 0.61 -2.18 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.07 2.10 7.43 -2.39 -0.02 2.08 16 29 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 31 H 0.41 12.22 5.24 -92.71 -0.49 11.73 16 32 H 0.05 1.60 6.46 -2.39 -0.02 1.58 16 33 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.07 0.94 7.65 -2.39 -0.02 0.92 16 39 H 0.06 1.32 5.75 -2.39 -0.01 1.30 16 40 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -77.18 316.91 4.10 -73.08 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.50 Total: 24.57 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 4.08 Total: -15.17 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -1.03 Total: -86.03 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -1.31 Total: -41.81 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.85 Total: 45.36 kcal Total: -77.18 4.10 -73.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597287794.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.399 kcal (2) G-P(sol) polarization free energy of solvation -77.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds