Wall clock time and date at job start Mon Mar 30 2020 05:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47347 * 2 1 4 4 C 1.50699 * 109.47456 * 239.99438 * 2 1 3 5 5 H 1.07995 * 120.00310 * 240.00209 * 4 2 1 6 6 C 1.37876 * 119.99625 * 60.00304 * 4 2 1 7 7 N 1.31518 * 120.00238 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99995 * 180.02562 * 6 4 2 9 9 H 1.48511 * 109.47164 * 89.99999 * 8 6 4 10 10 H 1.48499 * 109.47338 * 209.99793 * 8 6 4 11 11 H 1.48503 * 109.47297 * 330.00057 * 8 6 4 12 12 C 1.50705 * 109.47188 * 119.99343 * 2 1 3 13 13 O 1.21284 * 119.99509 * 95.09377 * 12 2 1 14 14 N 1.34773 * 120.00381 * 275.10190 * 12 2 1 15 15 C 1.47198 * 121.07316 * 354.79854 * 14 12 2 16 16 C 1.53058 * 109.34189 * 126.72318 * 15 14 12 17 17 C 1.53281 * 109.66992 * 53.39171 * 16 15 14 18 18 C 1.52651 * 108.93083 * 299.19449 * 17 16 15 19 19 H 1.08997 * 109.38499 * 303.66635 * 18 17 16 20 20 C 1.52753 * 111.37098 * 182.63241 * 18 17 16 21 21 O 1.43164 * 108.68116 * 181.33987 * 20 18 17 22 22 C 1.42753 * 114.81189 * 60.37042 * 21 20 18 23 23 C 1.53326 * 110.05944 * 300.47033 * 22 21 20 24 24 C 1.46579 * 121.07595 * 174.78155 * 14 12 2 25 25 H 1.09005 * 109.73694 * 115.89488 * 24 14 12 26 26 H 1.09001 * 109.46992 * 184.94922 * 1 2 3 27 27 H 1.09001 * 109.47468 * 304.94925 * 1 2 3 28 28 H 1.09004 * 109.46825 * 64.94592 * 1 2 3 29 29 H 0.96997 * 120.00276 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.49313 * 246.68224 * 15 14 12 31 31 H 1.09000 * 109.49610 * 6.72836 * 15 14 12 32 32 H 1.09004 * 109.39672 * 173.37551 * 16 15 14 33 33 H 1.09001 * 109.39235 * 293.18357 * 16 15 14 34 34 H 1.09003 * 109.31396 * 179.50678 * 17 16 15 35 35 H 1.09001 * 109.81478 * 59.18247 * 17 16 15 36 36 H 1.09002 * 109.59935 * 61.58155 * 20 18 17 37 37 H 1.08991 * 109.73478 * 301.18008 * 20 18 17 38 38 H 1.08998 * 109.37629 * 180.28716 * 22 21 20 39 39 H 1.09002 * 109.27771 * 60.58583 * 22 21 20 40 40 H 1.09003 * 109.63057 * 176.49795 * 23 22 21 41 41 H 1.09002 * 109.62513 * 297.08330 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.3428 -2.1619 -4.4117 10 1 2.4867 -0.1416 -5.1122 11 1 3.6294 -1.7586 -3.7120 12 6 2.0323 -0.7103 1.2306 13 8 2.3224 -1.8867 1.1757 14 7 2.1591 -0.0384 2.3920 15 6 1.9229 1.4129 2.4598 16 6 0.9026 1.7095 3.5615 17 6 1.3643 1.0728 4.8772 18 6 1.4649 -0.4386 4.6874 19 1 0.5047 -0.8250 4.3459 20 6 1.8596 -1.1377 5.9870 21 8 1.9677 -2.5432 5.7370 22 6 2.9425 -2.9045 4.7588 23 6 2.6118 -2.2408 3.4167 24 6 2.5364 -0.7293 3.6285 25 1 3.5018 -0.3612 3.9760 26 1 -0.3633 -1.0238 0.0887 27 1 -0.3634 0.5887 0.8423 28 1 -0.3633 0.4352 -0.9310 29 1 0.7089 1.1611 -3.4844 30 1 2.8593 1.9238 2.6841 31 1 1.5375 1.7639 1.5025 32 1 0.8146 2.7880 3.6926 33 1 -0.0664 1.2992 3.2774 34 1 0.6383 1.2948 5.6594 35 1 2.3392 1.4710 5.1583 36 1 1.0969 -0.9585 6.7448 37 1 2.8183 -0.7534 6.3351 38 1 2.9467 -3.9875 4.6353 39 1 3.9264 -2.5748 5.0924 40 1 3.3931 -2.4706 2.6922 41 1 1.6519 -2.6080 3.0534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597373759.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:40 Heat of formation + Delta-G solvation = -84.430807 kcal Electronic energy + Delta-G solvation = -22035.355615 eV Core-core repulsion = 18914.990740 eV Total energy + Delta-G solvation = -3120.364874 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.48304 -38.28213 -36.48536 -33.98895 -32.83763 -32.29980 -30.34405 -29.93506 -25.57617 -25.18153 -24.86059 -23.21135 -22.05021 -20.69980 -20.31769 -18.23085 -16.44584 -16.27393 -15.89712 -15.61464 -15.18127 -15.08341 -14.50226 -14.41816 -14.02947 -13.48200 -13.19551 -12.89320 -12.74468 -12.55098 -12.18799 -11.81215 -11.43425 -11.35520 -11.17846 -11.01751 -10.94232 -10.76428 -10.65887 -10.60739 -10.37952 -10.28718 -10.11015 -9.95451 -9.57747 -8.97947 -8.44508 -8.00352 -7.99427 -6.04628 -4.08202 3.32572 3.38361 3.43482 3.57342 3.69679 3.92703 4.44884 4.65827 4.77381 4.83206 5.10248 5.17175 5.22711 5.28090 5.35428 5.40215 5.50869 5.63059 5.64080 5.72784 5.73067 5.87370 5.90728 6.01190 6.08306 6.15727 6.23430 6.34231 6.51645 6.64026 6.70207 6.86542 6.98716 7.16526 7.28018 7.43298 7.76198 7.97761 8.12241 8.38373 8.97756 9.23556 9.56802 11.02439 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028334 B = 0.005842 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.961040 B = 4791.531656 C = 5500.971666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.030 3.970 3 H 0.047 0.953 4 C -0.498 4.498 5 H 0.069 0.931 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.526 3.474 13 O -0.540 6.540 14 N -0.622 5.622 15 C 0.107 3.893 16 C -0.134 4.134 17 C -0.109 4.109 18 C -0.139 4.139 19 H 0.082 0.918 20 C 0.073 3.927 21 O -0.389 6.389 22 C 0.055 3.945 23 C -0.139 4.139 24 C 0.150 3.850 25 H 0.060 0.940 26 H 0.029 0.971 27 H 0.012 0.988 28 H 0.095 0.905 29 H 0.261 0.739 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.043 0.957 40 H 0.099 0.901 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.252 2.261 15.401 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.009 3.991 3 H 0.064 0.936 4 C -0.537 4.537 5 H 0.087 0.913 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.318 3.682 13 O -0.417 6.417 14 N -0.357 5.357 15 C -0.016 4.016 16 C -0.172 4.172 17 C -0.147 4.147 18 C -0.158 4.158 19 H 0.100 0.900 20 C -0.004 4.004 21 O -0.307 6.307 22 C -0.022 4.022 23 C -0.177 4.177 24 C 0.046 3.954 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.031 0.969 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.062 0.938 40 H 0.118 0.882 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.228 1.590 15.275 15.406 hybrid contribution 0.397 -0.021 -0.937 1.018 sum 1.625 1.570 14.337 14.514 Atomic orbital electron populations 1.21696 0.96239 0.99136 1.01714 1.18907 0.94214 0.96612 0.89331 0.93567 1.21088 1.31033 1.12452 0.89109 0.91273 1.24934 0.95131 0.95048 0.99068 1.69858 1.37039 1.23060 1.23554 0.86461 0.79415 0.79281 0.82102 1.20615 1.21282 1.19830 1.21956 0.74910 0.87382 0.83943 1.90528 1.49639 1.17058 1.84453 1.48342 1.71062 1.08267 1.08032 1.21736 0.98186 0.81010 1.00700 1.21926 0.99821 1.00592 0.94862 1.21429 1.01387 0.94134 0.97706 1.22211 1.00917 0.96242 0.96464 0.89960 1.22503 1.00681 0.81348 0.95903 1.87849 1.60188 1.22918 1.59777 1.22882 0.90639 1.00387 0.88320 1.22596 1.05722 0.93169 0.96177 1.21008 0.95855 0.93560 0.85000 0.92210 0.95148 0.96874 0.88636 0.92925 0.92362 0.88214 0.90896 0.91309 0.91805 0.91850 0.89017 0.93315 0.88858 0.93838 0.88246 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.94 37.16 0.33 -2.74 16 2 C 0.03 0.75 1.82 -92.92 -0.17 0.58 16 3 H 0.05 1.16 6.29 -51.93 -0.33 0.83 16 4 C -0.50 -14.04 8.33 -34.44 -0.29 -14.32 16 5 H 0.07 2.05 7.03 -52.49 -0.37 1.68 16 6 C 0.06 1.62 5.29 -17.82 -0.09 1.53 16 7 N -0.90 -24.93 11.29 55.43 0.63 -24.31 16 8 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.53 11.98 6.70 -10.98 -0.07 11.90 16 13 O -0.54 -13.54 11.65 5.55 0.06 -13.47 16 14 N -0.62 -11.27 2.97 -165.30 -0.49 -11.76 16 15 C 0.11 1.61 6.26 -3.63 -0.02 1.59 16 16 C -0.13 -1.62 6.06 -26.56 -0.16 -1.78 16 17 C -0.11 -1.18 5.29 -26.76 -0.14 -1.32 16 18 C -0.14 -1.82 2.17 -90.70 -0.20 -2.01 16 19 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 20 C 0.07 0.85 6.29 37.03 0.23 1.08 16 21 O -0.39 -5.52 10.73 -35.23 -0.38 -5.90 16 22 C 0.05 0.75 6.84 37.33 0.26 1.00 16 23 C -0.14 -2.34 3.88 -26.66 -0.10 -2.44 16 24 C 0.15 2.35 2.67 -67.76 -0.18 2.17 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.01 0.26 7.93 -51.93 -0.41 -0.16 16 28 H 0.10 2.46 5.95 -51.93 -0.31 2.15 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.10 1.67 5.27 -51.93 -0.27 1.39 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.10 1.88 6.57 -51.93 -0.34 1.54 16 41 H 0.08 1.58 7.23 -51.93 -0.38 1.21 16 LS Contribution 310.32 15.07 4.68 4.68 Total: -1.00 -30.23 310.32 -7.75 -37.97 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.61 Total: 0.87 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -0.61 Total: -4.77 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.14 Total: -36.07 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.31 Total: -19.37 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.23 -7.75 -37.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597373759.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.457 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds