Wall clock time and date at job start Mon Mar 30 2020 05:18:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09000 * 109.47347 * 2 1
4 4 C 1.50699 * 109.47456 * 239.99438 * 2 1 3
5 5 H 1.07995 * 120.00310 * 240.00209 * 4 2 1
6 6 C 1.37876 * 119.99625 * 60.00304 * 4 2 1
7 7 N 1.31518 * 120.00238 * 359.97438 * 6 4 2
8 8 Si 1.86797 * 119.99995 * 180.02562 * 6 4 2
9 9 H 1.48511 * 109.47164 * 89.99999 * 8 6 4
10 10 H 1.48499 * 109.47338 * 209.99793 * 8 6 4
11 11 H 1.48503 * 109.47297 * 330.00057 * 8 6 4
12 12 C 1.50705 * 109.47188 * 119.99343 * 2 1 3
13 13 O 1.21284 * 119.99509 * 95.09377 * 12 2 1
14 14 N 1.34773 * 120.00381 * 275.10190 * 12 2 1
15 15 C 1.47198 * 121.07316 * 354.79854 * 14 12 2
16 16 C 1.53058 * 109.34189 * 126.72318 * 15 14 12
17 17 C 1.53281 * 109.66992 * 53.39171 * 16 15 14
18 18 C 1.52651 * 108.93083 * 299.19449 * 17 16 15
19 19 H 1.08997 * 109.38499 * 303.66635 * 18 17 16
20 20 C 1.52753 * 111.37098 * 182.63241 * 18 17 16
21 21 O 1.43164 * 108.68116 * 181.33987 * 20 18 17
22 22 C 1.42753 * 114.81189 * 60.37042 * 21 20 18
23 23 C 1.53326 * 110.05944 * 300.47033 * 22 21 20
24 24 C 1.46579 * 121.07595 * 174.78155 * 14 12 2
25 25 H 1.09005 * 109.73694 * 115.89488 * 24 14 12
26 26 H 1.09001 * 109.46992 * 184.94922 * 1 2 3
27 27 H 1.09001 * 109.47468 * 304.94925 * 1 2 3
28 28 H 1.09004 * 109.46825 * 64.94592 * 1 2 3
29 29 H 0.96997 * 120.00276 * 179.97438 * 7 6 4
30 30 H 1.09004 * 109.49313 * 246.68224 * 15 14 12
31 31 H 1.09000 * 109.49610 * 6.72836 * 15 14 12
32 32 H 1.09004 * 109.39672 * 173.37551 * 16 15 14
33 33 H 1.09001 * 109.39235 * 293.18357 * 16 15 14
34 34 H 1.09003 * 109.31396 * 179.50678 * 17 16 15
35 35 H 1.09001 * 109.81478 * 59.18247 * 17 16 15
36 36 H 1.09002 * 109.59935 * 61.58155 * 20 18 17
37 37 H 1.08991 * 109.73478 * 301.18008 * 20 18 17
38 38 H 1.08998 * 109.37629 * 180.28716 * 22 21 20
39 39 H 1.09002 * 109.27771 * 60.58583 * 22 21 20
40 40 H 1.09003 * 109.63057 * 176.49795 * 23 22 21
41 41 H 1.09002 * 109.62513 * 297.08330 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0324 -0.7105 -1.2304
5 1 2.6532 -1.5886 -1.1312
6 6 1.6993 -0.2395 -2.4826
7 7 0.9428 0.8295 -2.6034
8 14 2.3215 -1.1205 -4.0078
9 1 1.3428 -2.1619 -4.4117
10 1 2.4867 -0.1416 -5.1122
11 1 3.6294 -1.7586 -3.7120
12 6 2.0323 -0.7103 1.2306
13 8 2.3224 -1.8867 1.1757
14 7 2.1591 -0.0384 2.3920
15 6 1.9229 1.4129 2.4598
16 6 0.9026 1.7095 3.5615
17 6 1.3643 1.0728 4.8772
18 6 1.4649 -0.4386 4.6874
19 1 0.5047 -0.8250 4.3459
20 6 1.8596 -1.1377 5.9870
21 8 1.9677 -2.5432 5.7370
22 6 2.9425 -2.9045 4.7588
23 6 2.6118 -2.2408 3.4167
24 6 2.5364 -0.7293 3.6285
25 1 3.5018 -0.3612 3.9760
26 1 -0.3633 -1.0238 0.0887
27 1 -0.3634 0.5887 0.8423
28 1 -0.3633 0.4352 -0.9310
29 1 0.7089 1.1611 -3.4844
30 1 2.8593 1.9238 2.6841
31 1 1.5375 1.7639 1.5025
32 1 0.8146 2.7880 3.6926
33 1 -0.0664 1.2992 3.2774
34 1 0.6383 1.2948 5.6594
35 1 2.3392 1.4710 5.1583
36 1 1.0969 -0.9585 6.7448
37 1 2.8183 -0.7534 6.3351
38 1 2.9467 -3.9875 4.6353
39 1 3.9264 -2.5748 5.0924
40 1 3.3931 -2.4706 2.6922
41 1 1.6519 -2.6080 3.0534
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597373759.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:18:40
Heat of formation + Delta-G solvation = -84.430807 kcal
Electronic energy + Delta-G solvation = -22035.355615 eV
Core-core repulsion = 18914.990740 eV
Total energy + Delta-G solvation = -3120.364874 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 267.162 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.48304 -38.28213 -36.48536 -33.98895 -32.83763 -32.29980 -30.34405 -29.93506
-25.57617 -25.18153 -24.86059 -23.21135 -22.05021 -20.69980 -20.31769 -18.23085
-16.44584 -16.27393 -15.89712 -15.61464 -15.18127 -15.08341 -14.50226 -14.41816
-14.02947 -13.48200 -13.19551 -12.89320 -12.74468 -12.55098 -12.18799 -11.81215
-11.43425 -11.35520 -11.17846 -11.01751 -10.94232 -10.76428 -10.65887 -10.60739
-10.37952 -10.28718 -10.11015 -9.95451 -9.57747 -8.97947 -8.44508 -8.00352
-7.99427 -6.04628 -4.08202 3.32572 3.38361 3.43482 3.57342 3.69679
3.92703 4.44884 4.65827 4.77381 4.83206 5.10248 5.17175 5.22711
5.28090 5.35428 5.40215 5.50869 5.63059 5.64080 5.72784 5.73067
5.87370 5.90728 6.01190 6.08306 6.15727 6.23430 6.34231 6.51645
6.64026 6.70207 6.86542 6.98716 7.16526 7.28018 7.43298 7.76198
7.97761 8.12241 8.38373 8.97756 9.23556 9.56802 11.02439
Molecular weight = 267.16amu
Principal moments of inertia in cm(-1)
A = 0.028334 B = 0.005842 C = 0.005089
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 987.961040 B = 4791.531656 C = 5500.971666
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.030 3.970
3 H 0.047 0.953
4 C -0.498 4.498
5 H 0.069 0.931
6 C 0.059 3.941
7 N -0.896 5.896
8 Si 0.899 3.101
9 H -0.280 1.280
10 H -0.287 1.287
11 H -0.273 1.273
12 C 0.526 3.474
13 O -0.540 6.540
14 N -0.622 5.622
15 C 0.107 3.893
16 C -0.134 4.134
17 C -0.109 4.109
18 C -0.139 4.139
19 H 0.082 0.918
20 C 0.073 3.927
21 O -0.389 6.389
22 C 0.055 3.945
23 C -0.139 4.139
24 C 0.150 3.850
25 H 0.060 0.940
26 H 0.029 0.971
27 H 0.012 0.988
28 H 0.095 0.905
29 H 0.261 0.739
30 H 0.058 0.942
31 H 0.100 0.900
32 H 0.072 0.928
33 H 0.068 0.932
34 H 0.063 0.937
35 H 0.063 0.937
36 H 0.092 0.908
37 H 0.049 0.951
38 H 0.093 0.907
39 H 0.043 0.957
40 H 0.099 0.901
41 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.252 2.261 15.401 15.616
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C 0.009 3.991
3 H 0.064 0.936
4 C -0.537 4.537
5 H 0.087 0.913
6 C -0.142 4.142
7 N -0.535 5.535
8 Si 0.727 3.273
9 H -0.206 1.206
10 H -0.213 1.213
11 H -0.198 1.198
12 C 0.318 3.682
13 O -0.417 6.417
14 N -0.357 5.357
15 C -0.016 4.016
16 C -0.172 4.172
17 C -0.147 4.147
18 C -0.158 4.158
19 H 0.100 0.900
20 C -0.004 4.004
21 O -0.307 6.307
22 C -0.022 4.022
23 C -0.177 4.177
24 C 0.046 3.954
25 H 0.078 0.922
26 H 0.049 0.951
27 H 0.031 0.969
28 H 0.114 0.886
29 H 0.071 0.929
30 H 0.076 0.924
31 H 0.118 0.882
32 H 0.091 0.909
33 H 0.087 0.913
34 H 0.082 0.918
35 H 0.082 0.918
36 H 0.110 0.890
37 H 0.067 0.933
38 H 0.111 0.889
39 H 0.062 0.938
40 H 0.118 0.882
41 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 1.228 1.590 15.275 15.406
hybrid contribution 0.397 -0.021 -0.937 1.018
sum 1.625 1.570 14.337 14.514
Atomic orbital electron populations
1.21696 0.96239 0.99136 1.01714 1.18907 0.94214 0.96612 0.89331
0.93567 1.21088 1.31033 1.12452 0.89109 0.91273 1.24934 0.95131
0.95048 0.99068 1.69858 1.37039 1.23060 1.23554 0.86461 0.79415
0.79281 0.82102 1.20615 1.21282 1.19830 1.21956 0.74910 0.87382
0.83943 1.90528 1.49639 1.17058 1.84453 1.48342 1.71062 1.08267
1.08032 1.21736 0.98186 0.81010 1.00700 1.21926 0.99821 1.00592
0.94862 1.21429 1.01387 0.94134 0.97706 1.22211 1.00917 0.96242
0.96464 0.89960 1.22503 1.00681 0.81348 0.95903 1.87849 1.60188
1.22918 1.59777 1.22882 0.90639 1.00387 0.88320 1.22596 1.05722
0.93169 0.96177 1.21008 0.95855 0.93560 0.85000 0.92210 0.95148
0.96874 0.88636 0.92925 0.92362 0.88214 0.90896 0.91309 0.91805
0.91850 0.89017 0.93315 0.88858 0.93838 0.88246 0.90106
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.07 8.94 37.16 0.33 -2.74 16
2 C 0.03 0.75 1.82 -92.92 -0.17 0.58 16
3 H 0.05 1.16 6.29 -51.93 -0.33 0.83 16
4 C -0.50 -14.04 8.33 -34.44 -0.29 -14.32 16
5 H 0.07 2.05 7.03 -52.49 -0.37 1.68 16
6 C 0.06 1.62 5.29 -17.82 -0.09 1.53 16
7 N -0.90 -24.93 11.29 55.43 0.63 -24.31 16
8 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16
9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
10 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16
11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16
12 C 0.53 11.98 6.70 -10.98 -0.07 11.90 16
13 O -0.54 -13.54 11.65 5.55 0.06 -13.47 16
14 N -0.62 -11.27 2.97 -165.30 -0.49 -11.76 16
15 C 0.11 1.61 6.26 -3.63 -0.02 1.59 16
16 C -0.13 -1.62 6.06 -26.56 -0.16 -1.78 16
17 C -0.11 -1.18 5.29 -26.76 -0.14 -1.32 16
18 C -0.14 -1.82 2.17 -90.70 -0.20 -2.01 16
19 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16
20 C 0.07 0.85 6.29 37.03 0.23 1.08 16
21 O -0.39 -5.52 10.73 -35.23 -0.38 -5.90 16
22 C 0.05 0.75 6.84 37.33 0.26 1.00 16
23 C -0.14 -2.34 3.88 -26.66 -0.10 -2.44 16
24 C 0.15 2.35 2.67 -67.76 -0.18 2.17 16
25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16
27 H 0.01 0.26 7.93 -51.93 -0.41 -0.16 16
28 H 0.10 2.46 5.95 -51.93 -0.31 2.15 16
29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16
30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16
31 H 0.10 1.67 5.27 -51.93 -0.27 1.39 16
32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16
34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16
37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
38 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16
39 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16
40 H 0.10 1.88 6.57 -51.93 -0.34 1.54 16
41 H 0.08 1.58 7.23 -51.93 -0.38 1.21 16
LS Contribution 310.32 15.07 4.68 4.68
Total: -1.00 -30.23 310.32 -7.75 -37.97
By element:
Atomic # 1 Polarization: 7.49 SS G_CDS: -6.61 Total: 0.87 kcal
Atomic # 6 Polarization: -4.16 SS G_CDS: -0.61 Total: -4.77 kcal
Atomic # 7 Polarization: -36.20 SS G_CDS: 0.14 Total: -36.07 kcal
Atomic # 8 Polarization: -19.06 SS G_CDS: -0.31 Total: -19.37 kcal
Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal
Total LS contribution 4.68 Total: 4.68 kcal
Total: -30.23 -7.75 -37.97 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597373759.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.457 kcal
(2) G-P(sol) polarization free energy of solvation -30.227 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.684 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.974 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.431 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds