Wall clock time and date at job start Mon Mar 30 2020 05:18:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09000 * 109.47347 * 2 1
4 4 C 1.50699 * 109.47456 * 239.99438 * 2 1 3
5 5 H 1.07995 * 120.00310 * 240.00209 * 4 2 1
6 6 C 1.37876 * 119.99625 * 60.00304 * 4 2 1
7 7 N 1.31518 * 120.00238 * 359.97438 * 6 4 2
8 8 Si 1.86797 * 119.99995 * 180.02562 * 6 4 2
9 9 H 1.48511 * 109.47164 * 89.99999 * 8 6 4
10 10 H 1.48499 * 109.47338 * 209.99793 * 8 6 4
11 11 H 1.48503 * 109.47297 * 330.00057 * 8 6 4
12 12 C 1.50705 * 109.47188 * 119.99343 * 2 1 3
13 13 O 1.21284 * 119.99509 * 95.09377 * 12 2 1
14 14 N 1.34773 * 120.00381 * 275.10190 * 12 2 1
15 15 C 1.47198 * 121.07316 * 354.79854 * 14 12 2
16 16 C 1.53058 * 109.34189 * 126.72318 * 15 14 12
17 17 C 1.53281 * 109.66992 * 53.39171 * 16 15 14
18 18 C 1.52651 * 108.93083 * 299.19449 * 17 16 15
19 19 H 1.08997 * 109.38499 * 303.66635 * 18 17 16
20 20 C 1.52753 * 111.37098 * 182.63241 * 18 17 16
21 21 O 1.43164 * 108.68116 * 181.33987 * 20 18 17
22 22 C 1.42753 * 114.81189 * 60.37042 * 21 20 18
23 23 C 1.53326 * 110.05944 * 300.47033 * 22 21 20
24 24 C 1.46579 * 121.07595 * 174.78155 * 14 12 2
25 25 H 1.09005 * 109.73694 * 115.89488 * 24 14 12
26 26 H 1.09001 * 109.46992 * 184.94922 * 1 2 3
27 27 H 1.09001 * 109.47468 * 304.94925 * 1 2 3
28 28 H 1.09004 * 109.46825 * 64.94592 * 1 2 3
29 29 H 0.96997 * 120.00276 * 179.97438 * 7 6 4
30 30 H 1.09004 * 109.49313 * 246.68224 * 15 14 12
31 31 H 1.09000 * 109.49610 * 6.72836 * 15 14 12
32 32 H 1.09004 * 109.39672 * 173.37551 * 16 15 14
33 33 H 1.09001 * 109.39235 * 293.18357 * 16 15 14
34 34 H 1.09003 * 109.31396 * 179.50678 * 17 16 15
35 35 H 1.09001 * 109.81478 * 59.18247 * 17 16 15
36 36 H 1.09002 * 109.59935 * 61.58155 * 20 18 17
37 37 H 1.08991 * 109.73478 * 301.18008 * 20 18 17
38 38 H 1.08998 * 109.37629 * 180.28716 * 22 21 20
39 39 H 1.09002 * 109.27771 * 60.58583 * 22 21 20
40 40 H 1.09003 * 109.63057 * 176.49795 * 23 22 21
41 41 H 1.09002 * 109.62513 * 297.08330 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0324 -0.7105 -1.2304
5 1 2.6532 -1.5886 -1.1312
6 6 1.6993 -0.2395 -2.4826
7 7 0.9428 0.8295 -2.6034
8 14 2.3215 -1.1205 -4.0078
9 1 1.3428 -2.1619 -4.4117
10 1 2.4867 -0.1416 -5.1122
11 1 3.6294 -1.7586 -3.7120
12 6 2.0323 -0.7103 1.2306
13 8 2.3224 -1.8867 1.1757
14 7 2.1591 -0.0384 2.3920
15 6 1.9229 1.4129 2.4598
16 6 0.9026 1.7095 3.5615
17 6 1.3643 1.0728 4.8772
18 6 1.4649 -0.4386 4.6874
19 1 0.5047 -0.8250 4.3459
20 6 1.8596 -1.1377 5.9870
21 8 1.9677 -2.5432 5.7370
22 6 2.9425 -2.9045 4.7588
23 6 2.6118 -2.2408 3.4167
24 6 2.5364 -0.7293 3.6285
25 1 3.5018 -0.3612 3.9760
26 1 -0.3633 -1.0238 0.0887
27 1 -0.3634 0.5887 0.8423
28 1 -0.3633 0.4352 -0.9310
29 1 0.7089 1.1611 -3.4844
30 1 2.8593 1.9238 2.6841
31 1 1.5375 1.7639 1.5025
32 1 0.8146 2.7880 3.6926
33 1 -0.0664 1.2992 3.2774
34 1 0.6383 1.2948 5.6594
35 1 2.3392 1.4710 5.1583
36 1 1.0969 -0.9585 6.7448
37 1 2.8183 -0.7534 6.3351
38 1 2.9467 -3.9875 4.6353
39 1 3.9264 -2.5748 5.0924
40 1 3.3931 -2.4706 2.6922
41 1 1.6519 -2.6080 3.0534
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597373759.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:18:39
Heat of formation + Delta-G solvation = -103.450865 kcal
Electronic energy + Delta-G solvation = -22036.180386 eV
Core-core repulsion = 18914.990740 eV
Total energy + Delta-G solvation = -3121.189646 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 267.162 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-41.82341 -39.69347 -37.77434 -35.94816 -34.13450 -33.72372 -32.08752 -31.21007
-27.30308 -26.67194 -26.21815 -24.40810 -23.74120 -21.82571 -21.52712 -19.79388
-18.38412 -17.74482 -17.29085 -16.89611 -16.70616 -16.31480 -16.06095 -15.58185
-15.39599 -14.97092 -14.75411 -14.38487 -14.04583 -13.93062 -13.57184 -13.34293
-13.08398 -12.87212 -12.65638 -12.54350 -12.47935 -12.34535 -12.24266 -12.10744
-11.91578 -11.73749 -11.58189 -11.21944 -11.03796 -10.70326 -10.53061 -9.69835
-9.43156 -8.17275 -6.28151 1.38452 1.39790 1.50657 1.91469 2.15152
2.44121 2.93172 3.11724 3.55583 3.70398 3.76050 4.01568 4.09203
4.17743 4.20118 4.27292 4.36275 4.44363 4.57964 4.62551 4.71458
4.73338 4.79080 4.82367 4.90553 4.92251 5.00063 5.03132 5.08768
5.17044 5.25512 5.30634 5.42184 5.46592 5.67763 5.76498 5.93401
6.18303 6.26032 6.61117 6.78586 7.37371 7.52885 8.88261
Molecular weight = 267.16amu
Principal moments of inertia in cm(-1)
A = 0.028334 B = 0.005842 C = 0.005089
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 987.961040 B = 4791.531656 C = 5500.971666
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C 0.028 3.972
3 H 0.043 0.957
4 C -0.527 4.527
5 H 0.043 0.957
6 C 0.021 3.979
7 N -0.909 5.909
8 Si 0.955 3.045
9 H -0.277 1.277
10 H -0.272 1.272
11 H -0.277 1.277
12 C 0.521 3.479
13 O -0.576 6.576
14 N -0.616 5.616
15 C 0.098 3.902
16 C -0.128 4.128
17 C -0.102 4.102
18 C -0.130 4.130
19 H 0.054 0.946
20 C 0.071 3.929
21 O -0.404 6.404
22 C 0.064 3.936
23 C -0.134 4.134
24 C 0.142 3.858
25 H 0.081 0.919
26 H 0.013 0.987
27 H 0.041 0.959
28 H 0.075 0.925
29 H 0.266 0.734
30 H 0.081 0.919
31 H 0.078 0.922
32 H 0.103 0.897
33 H 0.052 0.948
34 H 0.090 0.910
35 H 0.084 0.916
36 H 0.116 0.884
37 H 0.073 0.927
38 H 0.098 0.902
39 H 0.068 0.932
40 H 0.070 0.930
41 H 0.041 0.959
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.665 3.731 17.627 18.095
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.007 3.993
3 H 0.060 0.940
4 C -0.565 4.565
5 H 0.061 0.939
6 C -0.178 4.178
7 N -0.549 5.549
8 Si 0.781 3.219
9 H -0.203 1.203
10 H -0.197 1.197
11 H -0.203 1.203
12 C 0.312 3.688
13 O -0.456 6.456
14 N -0.350 5.350
15 C -0.024 4.024
16 C -0.166 4.166
17 C -0.139 4.139
18 C -0.150 4.150
19 H 0.072 0.928
20 C -0.006 4.006
21 O -0.323 6.323
22 C -0.013 4.013
23 C -0.172 4.172
24 C 0.039 3.961
25 H 0.099 0.901
26 H 0.032 0.968
27 H 0.060 0.940
28 H 0.094 0.906
29 H 0.075 0.925
30 H 0.100 0.900
31 H 0.096 0.904
32 H 0.122 0.878
33 H 0.070 0.930
34 H 0.109 0.891
35 H 0.102 0.898
36 H 0.134 0.866
37 H 0.091 0.909
38 H 0.116 0.884
39 H 0.086 0.914
40 H 0.089 0.911
41 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges 1.631 3.107 17.540 17.888
hybrid contribution 0.265 -0.439 -1.608 1.688
sum 1.896 2.668 15.932 16.264
Atomic orbital electron populations
1.21491 0.95722 0.98313 1.01787 1.18813 0.94650 0.96130 0.89703
0.93966 1.21229 1.31723 1.12357 0.91220 0.93857 1.25579 0.95177
0.95719 1.01350 1.69930 1.37058 1.23508 1.24373 0.85601 0.78597
0.78533 0.79176 1.20295 1.19693 1.20251 1.21555 0.75338 0.86945
0.84985 1.90523 1.51388 1.18346 1.85324 1.48293 1.69481 1.09645
1.07546 1.21999 1.00343 0.78943 1.01128 1.21912 0.97762 1.02594
0.94364 1.21441 1.03330 0.91699 0.97463 1.22159 0.98279 0.98424
0.96157 0.92755 1.22741 1.02776 0.79771 0.95286 1.87837 1.60415
1.24775 1.59304 1.22778 0.91629 1.00493 0.86382 1.22379 1.02549
0.94747 0.97506 1.21292 0.97945 0.92412 0.84492 0.90126 0.96772
0.93985 0.90646 0.92497 0.90050 0.90375 0.87818 0.92958 0.89100
0.89773 0.86615 0.90886 0.88401 0.91391 0.91142 0.94032
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -5.62 8.94 71.98 0.64 -4.97 16
2 C 0.03 1.45 1.82 -12.29 -0.02 1.42 16
3 H 0.04 2.19 6.29 -2.39 -0.02 2.17 16
4 C -0.53 -30.90 8.33 25.60 0.21 -30.68 16
5 H 0.04 2.71 7.03 -2.91 -0.02 2.69 16
6 C 0.02 1.18 5.29 84.65 0.45 1.63 16
7 N -0.91 -51.20 11.29 21.45 0.24 -50.96 16
8 Si 0.96 45.18 29.54 68.60 2.03 47.20 16
9 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16
10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16
11 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16
12 C 0.52 24.69 6.70 87.66 0.59 25.28 16
13 O -0.58 -30.67 11.65 -3.04 -0.04 -30.70 16
14 N -0.62 -22.33 2.97 -795.29 -2.36 -24.68 16
15 C 0.10 2.80 6.26 86.27 0.54 3.34 16
16 C -0.13 -2.72 6.06 30.71 0.19 -2.53 16
17 C -0.10 -1.77 5.29 30.57 0.16 -1.60 16
18 C -0.13 -3.10 2.17 -10.85 -0.02 -3.12 16
19 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16
20 C 0.07 1.39 6.29 71.90 0.45 1.84 16
21 O -0.40 -10.62 10.73 -148.98 -1.60 -12.22 16
22 C 0.06 1.68 6.84 72.09 0.49 2.17 16
23 C -0.13 -4.62 3.88 30.64 0.12 -4.50 16
24 C 0.14 4.29 2.67 45.06 0.12 4.41 16
25 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16
26 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16
27 H 0.04 1.74 7.93 -2.39 -0.02 1.72 16
28 H 0.07 3.99 5.95 -2.38 -0.01 3.98 16
29 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16
30 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16
31 H 0.08 2.58 5.27 -2.39 -0.01 2.57 16
32 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16
33 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16
34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16
35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
36 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16
37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16
38 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16
39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16
40 H 0.07 2.82 6.57 -2.39 -0.02 2.80 16
41 H 0.04 1.73 7.23 -2.39 -0.02 1.71 16
Total: -1.00 -68.81 310.32 3.20 -65.61
By element:
Atomic # 1 Polarization: 12.08 SS G_CDS: 1.00 Total: 13.08 kcal
Atomic # 6 Polarization: -11.25 SS G_CDS: 3.92 Total: -7.33 kcal
Atomic # 7 Polarization: -73.53 SS G_CDS: -2.12 Total: -75.65 kcal
Atomic # 8 Polarization: -41.29 SS G_CDS: -1.63 Total: -42.93 kcal
Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal
Total: -68.81 3.20 -65.61 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597373759.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.837 kcal
(2) G-P(sol) polarization free energy of solvation -68.811 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.648 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.614 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.451 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds