Wall clock time and date at job start Mon Mar 30 2020 05:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47347 * 2 1 4 4 C 1.50699 * 109.47456 * 239.99438 * 2 1 3 5 5 H 1.07995 * 120.00310 * 240.00209 * 4 2 1 6 6 C 1.37876 * 119.99625 * 60.00304 * 4 2 1 7 7 N 1.31518 * 120.00238 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99995 * 180.02562 * 6 4 2 9 9 H 1.48511 * 109.47164 * 89.99999 * 8 6 4 10 10 H 1.48499 * 109.47338 * 209.99793 * 8 6 4 11 11 H 1.48503 * 109.47297 * 330.00057 * 8 6 4 12 12 C 1.50705 * 109.47188 * 119.99343 * 2 1 3 13 13 O 1.21284 * 119.99509 * 95.09377 * 12 2 1 14 14 N 1.34773 * 120.00381 * 275.10190 * 12 2 1 15 15 C 1.47198 * 121.07316 * 354.79854 * 14 12 2 16 16 C 1.53058 * 109.34189 * 126.72318 * 15 14 12 17 17 C 1.53281 * 109.66992 * 53.39171 * 16 15 14 18 18 C 1.52651 * 108.93083 * 299.19449 * 17 16 15 19 19 H 1.08997 * 109.38499 * 303.66635 * 18 17 16 20 20 C 1.52753 * 111.37098 * 182.63241 * 18 17 16 21 21 O 1.43164 * 108.68116 * 181.33987 * 20 18 17 22 22 C 1.42753 * 114.81189 * 60.37042 * 21 20 18 23 23 C 1.53326 * 110.05944 * 300.47033 * 22 21 20 24 24 C 1.46579 * 121.07595 * 174.78155 * 14 12 2 25 25 H 1.09005 * 109.73694 * 115.89488 * 24 14 12 26 26 H 1.09001 * 109.46992 * 184.94922 * 1 2 3 27 27 H 1.09001 * 109.47468 * 304.94925 * 1 2 3 28 28 H 1.09004 * 109.46825 * 64.94592 * 1 2 3 29 29 H 0.96997 * 120.00276 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.49313 * 246.68224 * 15 14 12 31 31 H 1.09000 * 109.49610 * 6.72836 * 15 14 12 32 32 H 1.09004 * 109.39672 * 173.37551 * 16 15 14 33 33 H 1.09001 * 109.39235 * 293.18357 * 16 15 14 34 34 H 1.09003 * 109.31396 * 179.50678 * 17 16 15 35 35 H 1.09001 * 109.81478 * 59.18247 * 17 16 15 36 36 H 1.09002 * 109.59935 * 61.58155 * 20 18 17 37 37 H 1.08991 * 109.73478 * 301.18008 * 20 18 17 38 38 H 1.08998 * 109.37629 * 180.28716 * 22 21 20 39 39 H 1.09002 * 109.27771 * 60.58583 * 22 21 20 40 40 H 1.09003 * 109.63057 * 176.49795 * 23 22 21 41 41 H 1.09002 * 109.62513 * 297.08330 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.3428 -2.1619 -4.4117 10 1 2.4867 -0.1416 -5.1122 11 1 3.6294 -1.7586 -3.7120 12 6 2.0323 -0.7103 1.2306 13 8 2.3224 -1.8867 1.1757 14 7 2.1591 -0.0384 2.3920 15 6 1.9229 1.4129 2.4598 16 6 0.9026 1.7095 3.5615 17 6 1.3643 1.0728 4.8772 18 6 1.4649 -0.4386 4.6874 19 1 0.5047 -0.8250 4.3459 20 6 1.8596 -1.1377 5.9870 21 8 1.9677 -2.5432 5.7370 22 6 2.9425 -2.9045 4.7588 23 6 2.6118 -2.2408 3.4167 24 6 2.5364 -0.7293 3.6285 25 1 3.5018 -0.3612 3.9760 26 1 -0.3633 -1.0238 0.0887 27 1 -0.3634 0.5887 0.8423 28 1 -0.3633 0.4352 -0.9310 29 1 0.7089 1.1611 -3.4844 30 1 2.8593 1.9238 2.6841 31 1 1.5375 1.7639 1.5025 32 1 0.8146 2.7880 3.6926 33 1 -0.0664 1.2992 3.2774 34 1 0.6383 1.2948 5.6594 35 1 2.3392 1.4710 5.1583 36 1 1.0969 -0.9585 6.7448 37 1 2.8183 -0.7534 6.3351 38 1 2.9467 -3.9875 4.6353 39 1 3.9264 -2.5748 5.0924 40 1 3.3931 -2.4706 2.6922 41 1 1.6519 -2.6080 3.0534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597373759.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:39 Heat of formation + Delta-G solvation = -103.450865 kcal Electronic energy + Delta-G solvation = -22036.180386 eV Core-core repulsion = 18914.990740 eV Total energy + Delta-G solvation = -3121.189646 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.82341 -39.69347 -37.77434 -35.94816 -34.13450 -33.72372 -32.08752 -31.21007 -27.30308 -26.67194 -26.21815 -24.40810 -23.74120 -21.82571 -21.52712 -19.79388 -18.38412 -17.74482 -17.29085 -16.89611 -16.70616 -16.31480 -16.06095 -15.58185 -15.39599 -14.97092 -14.75411 -14.38487 -14.04583 -13.93062 -13.57184 -13.34293 -13.08398 -12.87212 -12.65638 -12.54350 -12.47935 -12.34535 -12.24266 -12.10744 -11.91578 -11.73749 -11.58189 -11.21944 -11.03796 -10.70326 -10.53061 -9.69835 -9.43156 -8.17275 -6.28151 1.38452 1.39790 1.50657 1.91469 2.15152 2.44121 2.93172 3.11724 3.55583 3.70398 3.76050 4.01568 4.09203 4.17743 4.20118 4.27292 4.36275 4.44363 4.57964 4.62551 4.71458 4.73338 4.79080 4.82367 4.90553 4.92251 5.00063 5.03132 5.08768 5.17044 5.25512 5.30634 5.42184 5.46592 5.67763 5.76498 5.93401 6.18303 6.26032 6.61117 6.78586 7.37371 7.52885 8.88261 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028334 B = 0.005842 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.961040 B = 4791.531656 C = 5500.971666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.028 3.972 3 H 0.043 0.957 4 C -0.527 4.527 5 H 0.043 0.957 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.272 1.272 11 H -0.277 1.277 12 C 0.521 3.479 13 O -0.576 6.576 14 N -0.616 5.616 15 C 0.098 3.902 16 C -0.128 4.128 17 C -0.102 4.102 18 C -0.130 4.130 19 H 0.054 0.946 20 C 0.071 3.929 21 O -0.404 6.404 22 C 0.064 3.936 23 C -0.134 4.134 24 C 0.142 3.858 25 H 0.081 0.919 26 H 0.013 0.987 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.266 0.734 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.665 3.731 17.627 18.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.007 3.993 3 H 0.060 0.940 4 C -0.565 4.565 5 H 0.061 0.939 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.781 3.219 9 H -0.203 1.203 10 H -0.197 1.197 11 H -0.203 1.203 12 C 0.312 3.688 13 O -0.456 6.456 14 N -0.350 5.350 15 C -0.024 4.024 16 C -0.166 4.166 17 C -0.139 4.139 18 C -0.150 4.150 19 H 0.072 0.928 20 C -0.006 4.006 21 O -0.323 6.323 22 C -0.013 4.013 23 C -0.172 4.172 24 C 0.039 3.961 25 H 0.099 0.901 26 H 0.032 0.968 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.134 0.866 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.631 3.107 17.540 17.888 hybrid contribution 0.265 -0.439 -1.608 1.688 sum 1.896 2.668 15.932 16.264 Atomic orbital electron populations 1.21491 0.95722 0.98313 1.01787 1.18813 0.94650 0.96130 0.89703 0.93966 1.21229 1.31723 1.12357 0.91220 0.93857 1.25579 0.95177 0.95719 1.01350 1.69930 1.37058 1.23508 1.24373 0.85601 0.78597 0.78533 0.79176 1.20295 1.19693 1.20251 1.21555 0.75338 0.86945 0.84985 1.90523 1.51388 1.18346 1.85324 1.48293 1.69481 1.09645 1.07546 1.21999 1.00343 0.78943 1.01128 1.21912 0.97762 1.02594 0.94364 1.21441 1.03330 0.91699 0.97463 1.22159 0.98279 0.98424 0.96157 0.92755 1.22741 1.02776 0.79771 0.95286 1.87837 1.60415 1.24775 1.59304 1.22778 0.91629 1.00493 0.86382 1.22379 1.02549 0.94747 0.97506 1.21292 0.97945 0.92412 0.84492 0.90126 0.96772 0.93985 0.90646 0.92497 0.90050 0.90375 0.87818 0.92958 0.89100 0.89773 0.86615 0.90886 0.88401 0.91391 0.91142 0.94032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.62 8.94 71.98 0.64 -4.97 16 2 C 0.03 1.45 1.82 -12.29 -0.02 1.42 16 3 H 0.04 2.19 6.29 -2.39 -0.02 2.17 16 4 C -0.53 -30.90 8.33 25.60 0.21 -30.68 16 5 H 0.04 2.71 7.03 -2.91 -0.02 2.69 16 6 C 0.02 1.18 5.29 84.65 0.45 1.63 16 7 N -0.91 -51.20 11.29 21.45 0.24 -50.96 16 8 Si 0.96 45.18 29.54 68.60 2.03 47.20 16 9 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 12 C 0.52 24.69 6.70 87.66 0.59 25.28 16 13 O -0.58 -30.67 11.65 -3.04 -0.04 -30.70 16 14 N -0.62 -22.33 2.97 -795.29 -2.36 -24.68 16 15 C 0.10 2.80 6.26 86.27 0.54 3.34 16 16 C -0.13 -2.72 6.06 30.71 0.19 -2.53 16 17 C -0.10 -1.77 5.29 30.57 0.16 -1.60 16 18 C -0.13 -3.10 2.17 -10.85 -0.02 -3.12 16 19 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 20 C 0.07 1.39 6.29 71.90 0.45 1.84 16 21 O -0.40 -10.62 10.73 -148.98 -1.60 -12.22 16 22 C 0.06 1.68 6.84 72.09 0.49 2.17 16 23 C -0.13 -4.62 3.88 30.64 0.12 -4.50 16 24 C 0.14 4.29 2.67 45.06 0.12 4.41 16 25 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 26 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.04 1.74 7.93 -2.39 -0.02 1.72 16 28 H 0.07 3.99 5.95 -2.38 -0.01 3.98 16 29 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 30 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.08 2.58 5.27 -2.39 -0.01 2.57 16 32 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 2.82 6.57 -2.39 -0.02 2.80 16 41 H 0.04 1.73 7.23 -2.39 -0.02 1.71 16 Total: -1.00 -68.81 310.32 3.20 -65.61 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 1.00 Total: 13.08 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 3.92 Total: -7.33 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -2.12 Total: -75.65 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -1.63 Total: -42.93 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -68.81 3.20 -65.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597373759.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.837 kcal (2) G-P(sol) polarization free energy of solvation -68.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds