Wall clock time and date at job start Mon Mar 30 2020 05:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47004 * 2 1 4 4 C 1.50695 * 109.46898 * 239.99927 * 2 1 3 5 5 H 1.08000 * 120.00066 * 239.99510 * 4 2 1 6 6 C 1.37879 * 120.00409 * 60.00018 * 4 2 1 7 7 N 1.31512 * 119.99536 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00355 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47165 * 59.99787 * 8 6 4 10 10 H 1.48496 * 109.46895 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46936 * 299.99978 * 8 6 4 12 12 C 1.50696 * 109.47224 * 119.99845 * 2 1 3 13 13 O 1.21289 * 120.00276 * 119.99935 * 12 2 1 14 14 N 1.34779 * 120.00346 * 300.00017 * 12 2 1 15 15 C 1.46496 * 120.00277 * 180.02562 * 14 12 2 16 16 H 1.09002 * 109.88062 * 35.00005 * 15 14 12 17 17 C 1.53711 * 109.89196 * 273.95872 * 15 14 12 18 18 C 1.52741 * 111.39486 * 182.59351 * 17 15 14 19 19 C 1.53763 * 111.44059 * 54.69361 * 18 17 15 20 20 C 1.51488 * 107.35136 * 302.55273 * 19 18 17 21 21 H 1.08999 * 109.45846 * 305.56350 * 20 19 18 22 22 O 1.42313 * 117.59592 * 179.55612 * 20 19 18 23 23 C 1.45033 * 105.23361 * 198.04008 * 22 20 19 24 24 C 1.55074 * 107.08566 * 27.00294 * 23 22 20 25 25 C 1.51854 * 109.89060 * 156.04180 * 15 14 12 26 26 H 1.08997 * 110.76915 * 62.53553 * 25 15 14 27 27 H 1.09004 * 109.46935 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47102 * 299.99566 * 1 2 3 29 29 H 1.08994 * 109.47482 * 60.00234 * 1 2 3 30 30 H 0.97005 * 119.99855 * 180.02562 * 7 6 4 31 31 H 0.97004 * 119.99397 * 359.97438 * 14 12 2 32 32 H 1.08996 * 109.08018 * 303.03105 * 17 15 14 33 33 H 1.08998 * 109.07818 * 62.00561 * 17 15 14 34 34 H 1.09005 * 109.07133 * 294.19143 * 18 17 15 35 35 H 1.08993 * 109.02307 * 175.16770 * 18 17 15 36 36 H 1.09001 * 109.88119 * 183.09396 * 19 18 17 37 37 H 1.09002 * 109.94320 * 62.04599 * 19 18 17 38 38 H 1.08996 * 109.91468 * 267.63475 * 23 22 20 39 39 H 1.08998 * 109.91159 * 146.35756 * 23 22 20 40 40 H 1.09005 * 110.69436 * 243.26361 * 24 23 22 41 41 H 1.08996 * 110.70017 * 120.06291 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.8280 -2.5199 -4.0081 10 1 1.8268 -0.4200 -5.2204 11 1 3.8074 -1.1190 -4.0077 12 6 2.0324 -0.7103 1.2304 13 8 2.7297 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.1956 -0.9401 3.6507 16 1 3.1952 -1.3348 3.4685 17 6 1.2402 -2.0861 4.0205 18 6 1.6836 -2.7899 5.3015 19 6 1.8478 -1.7943 6.4618 20 6 2.8523 -0.7492 6.0217 21 1 3.7707 -1.2408 5.7009 22 8 3.1619 0.2947 6.9380 23 6 3.7676 1.3395 6.1350 24 6 3.2034 1.1944 4.6978 25 6 2.2260 0.0212 4.8258 26 1 1.2226 0.3764 5.0606 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 0.7081 1.1607 -3.4844 31 1 1.1494 0.5390 2.5435 32 1 0.2383 -1.6820 4.1649 33 1 1.2176 -2.8084 3.2045 34 1 2.6361 -3.2888 5.1224 35 1 0.9366 -3.5352 5.5742 36 1 2.2166 -2.3135 7.3463 37 1 0.8917 -1.3196 6.6825 38 1 4.8506 1.2176 6.1228 39 1 3.5060 2.3173 6.5394 40 1 4.0004 0.9566 3.9933 41 1 2.6793 2.1013 4.3963 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597386526.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:27 Heat of formation + Delta-G solvation = -122.535867 kcal Electronic energy + Delta-G solvation = -21287.075609 eV Core-core repulsion = 18165.058375 eV Total energy + Delta-G solvation = -3122.017234 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.72136 -40.24520 -37.49238 -35.74968 -35.03204 -33.07361 -32.21546 -30.20229 -29.13118 -27.18978 -24.86514 -23.78456 -23.04780 -21.96823 -21.40572 -20.84255 -18.41061 -17.94192 -17.25156 -16.88347 -16.64620 -16.21728 -16.03193 -15.80354 -15.45986 -14.88454 -14.77324 -14.38099 -14.25649 -13.88708 -13.49846 -13.12132 -12.97204 -12.90140 -12.69798 -12.60326 -12.36848 -12.23377 -12.18847 -12.00999 -11.76466 -11.74779 -11.54806 -11.36087 -11.04134 -10.68525 -10.55831 -10.22803 -9.91988 -8.14759 -6.24940 1.40949 1.42166 1.50793 1.95658 2.33141 2.51175 2.71199 3.14826 3.56715 3.65258 3.71384 3.99130 4.03879 4.17550 4.25991 4.28306 4.32827 4.41577 4.44003 4.51471 4.73715 4.75576 4.83266 4.88330 4.95169 4.99910 5.02917 5.05406 5.06722 5.17240 5.19247 5.25836 5.37552 5.50654 5.66479 5.76329 5.88240 5.95356 6.22739 6.75743 6.88084 7.40803 7.57889 8.90713 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.032188 B = 0.004487 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.692698 B = 6238.094932 C = 6540.065010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.024 3.976 3 H 0.040 0.960 4 C -0.529 4.529 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.954 3.046 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.277 1.277 12 C 0.524 3.476 13 O -0.587 6.587 14 N -0.719 5.719 15 C 0.159 3.841 16 H 0.060 0.940 17 C -0.129 4.129 18 C -0.106 4.106 19 C -0.102 4.102 20 C 0.077 3.923 21 H 0.056 0.944 22 O -0.382 6.382 23 C 0.046 3.954 24 C -0.150 4.150 25 C -0.124 4.124 26 H 0.104 0.896 27 H 0.021 0.979 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.265 0.735 31 H 0.409 0.591 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.213 0.820 18.761 18.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.003 3.997 3 H 0.058 0.942 4 C -0.568 4.568 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.202 1.202 12 C 0.313 3.687 13 O -0.467 6.467 14 N -0.371 5.371 15 C 0.054 3.946 16 H 0.078 0.922 17 C -0.168 4.168 18 C -0.144 4.144 19 C -0.139 4.139 20 C 0.018 3.982 21 H 0.074 0.926 22 O -0.302 6.302 23 C -0.030 4.030 24 C -0.187 4.187 25 C -0.143 4.143 26 H 0.122 0.878 27 H 0.040 0.960 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.245 0.755 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.083 0.917 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.173 0.241 18.769 18.771 hybrid contribution 0.290 -0.073 -1.469 1.499 sum 0.463 0.168 17.300 17.307 Atomic orbital electron populations 1.21542 0.95076 0.99311 1.01673 1.18798 0.95303 0.95878 0.89746 0.94211 1.21259 1.31584 1.12708 0.91200 0.93460 1.25579 0.95217 0.95746 1.01363 1.69940 1.37154 1.23562 1.24319 0.85678 0.78647 0.78745 0.78965 1.20233 1.19911 1.20243 1.21494 0.78010 0.83610 0.85595 1.90505 1.40003 1.28672 1.87507 1.46023 1.54256 1.32249 1.04542 1.20728 0.97624 0.92634 0.83581 0.92156 1.21978 0.99803 0.97238 0.97806 1.21449 1.02425 0.97845 0.92642 1.21377 0.98800 0.95165 0.98558 1.22571 0.97600 0.89949 0.88031 0.92589 1.88740 1.81156 1.28306 1.31957 1.23700 0.97577 0.92090 0.89617 1.22751 0.99188 0.99411 0.97375 1.22744 1.01418 0.95138 0.94996 0.87805 0.95984 0.92947 0.91187 0.92625 0.75546 0.90582 0.93975 0.92210 0.89226 0.89760 0.89976 0.91523 0.87829 0.91747 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.87 71.98 0.64 -4.69 16 2 C 0.02 1.20 2.64 -12.29 -0.03 1.16 16 3 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.53 -30.70 8.37 25.60 0.21 -30.49 16 5 H 0.05 2.94 6.75 -2.91 -0.02 2.92 16 6 C 0.02 1.13 5.30 84.66 0.45 1.58 16 7 N -0.91 -51.04 11.32 21.45 0.24 -50.80 16 8 Si 0.95 45.03 29.54 68.60 2.03 47.05 16 9 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 C 0.52 23.71 7.13 87.66 0.63 24.33 16 13 O -0.59 -31.15 15.13 -3.06 -0.05 -31.20 16 14 N -0.72 -23.66 4.91 -443.19 -2.18 -25.83 16 15 C 0.16 4.48 2.07 44.85 0.09 4.57 16 16 H 0.06 2.04 7.47 -2.39 -0.02 2.02 16 17 C -0.13 -3.31 5.48 30.75 0.17 -3.14 16 18 C -0.11 -2.04 5.85 30.77 0.18 -1.86 16 19 C -0.10 -1.77 5.97 30.36 0.18 -1.59 16 20 C 0.08 1.61 2.75 30.93 0.09 1.70 16 21 H 0.06 1.27 7.94 -2.39 -0.02 1.25 16 22 O -0.38 -8.50 11.50 -148.98 -1.71 -10.21 16 23 C 0.05 0.84 7.72 72.69 0.56 1.40 16 24 C -0.15 -3.02 6.60 31.38 0.21 -2.81 16 25 C -0.12 -2.66 2.18 -10.26 -0.02 -2.68 16 26 H 0.10 2.00 8.11 -2.39 -0.02 1.98 16 27 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.05 1.88 7.57 -2.38 -0.02 1.86 16 29 H 0.07 3.51 6.07 -2.39 -0.01 3.49 16 30 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16 31 H 0.41 11.28 8.02 -92.71 -0.74 10.54 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 1.31 8.11 -2.39 -0.02 1.29 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.06 1.51 8.03 -2.38 -0.02 1.49 16 41 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -67.27 322.45 1.95 -65.32 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.27 Total: 18.17 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 3.35 Total: -12.51 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -1.93 Total: -76.63 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -1.76 Total: -41.41 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -67.27 1.95 -65.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597386526.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.214 kcal (2) G-P(sol) polarization free energy of solvation -67.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds