Wall clock time and date at job start Mon Mar 30 2020 05:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47451 * 2 1 4 4 C 1.50703 * 109.47171 * 240.00129 * 2 1 3 5 5 H 1.07994 * 120.00613 * 245.38679 * 4 2 1 6 6 C 1.37890 * 119.99517 * 65.38310 * 4 2 1 7 7 N 1.31513 * 119.99469 * 185.16006 * 6 4 2 8 8 Si 1.86793 * 120.00163 * 4.88859 * 6 4 2 9 9 H 1.48496 * 109.47258 * 270.27332 * 8 6 4 10 10 H 1.48509 * 109.47235 * 30.27303 * 8 6 4 11 11 H 1.48495 * 109.47210 * 150.27273 * 8 6 4 12 12 C 1.50700 * 109.47509 * 120.00821 * 2 1 3 13 13 O 1.21278 * 120.00404 * 119.99435 * 12 2 1 14 14 N 1.34784 * 119.99501 * 299.99894 * 12 2 1 15 15 C 1.46498 * 120.00086 * 179.97438 * 14 12 2 16 16 H 1.09002 * 109.55199 * 35.00124 * 15 14 12 17 17 C 1.53153 * 109.55729 * 274.79644 * 15 14 12 18 18 C 1.53055 * 109.40721 * 181.62428 * 17 15 14 19 19 O 1.43050 * 109.52339 * 59.17324 * 18 17 15 20 20 C 1.42587 * 113.84412 * 301.31963 * 19 18 17 21 21 C 1.53389 * 113.62028 * 188.22336 * 20 19 18 22 22 C 1.53849 * 86.98311 * 89.43988 * 21 20 19 23 23 C 1.53427 * 113.56659 * 286.14910 * 20 19 18 24 24 C 1.52809 * 112.93625 * 57.11593 * 20 19 18 25 25 H 1.09000 * 109.47332 * 54.98459 * 1 2 3 26 26 H 1.09000 * 109.46809 * 174.98194 * 1 2 3 27 27 H 1.08999 * 109.46952 * 294.98654 * 1 2 3 28 28 H 0.96997 * 120.00204 * 354.72479 * 7 6 4 29 29 H 0.96996 * 119.99765 * 359.97438 * 14 12 2 30 30 H 1.08998 * 109.48035 * 301.50892 * 17 15 14 31 31 H 1.09009 * 109.48315 * 61.54039 * 17 15 14 32 32 H 1.08998 * 109.39097 * 299.18110 * 18 17 15 33 33 H 1.09004 * 109.48255 * 179.21363 * 18 17 15 34 34 H 1.09006 * 113.63071 * 203.96129 * 21 20 19 35 35 H 1.09001 * 113.63388 * 334.91477 * 21 20 19 36 36 H 1.09001 * 113.60942 * 270.59688 * 22 21 20 37 37 H 1.09005 * 113.68184 * 139.73148 * 22 21 20 38 38 H 1.08993 * 113.63330 * 25.02990 * 23 20 19 39 39 H 1.08997 * 113.62631 * 155.99146 * 23 20 19 40 40 H 1.08997 * 109.56415 * 186.22273 * 24 20 19 41 41 H 1.09004 * 109.56832 * 65.87228 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5796 -1.6364 -1.1339 6 6 1.7931 -0.1780 -2.4798 7 7 2.1415 -0.8469 -3.5572 8 14 0.9675 1.4897 -2.6419 9 1 -0.5051 1.3091 -2.7037 10 1 1.3143 2.3300 -1.4676 11 1 1.4370 2.1559 -3.8832 12 6 2.0324 -0.7106 1.2303 13 8 2.7296 -1.6966 1.1190 14 7 1.7068 -0.2502 2.4545 15 6 2.1947 -0.9411 3.6507 16 1 3.1939 -1.3342 3.4628 17 6 1.2478 -2.0933 3.9993 18 6 1.7382 -2.7873 5.2722 19 8 1.7811 -1.8426 6.3455 20 6 2.6265 -0.7223 6.0940 21 6 2.8271 0.1829 7.3160 22 6 4.0317 -0.7045 7.6739 23 6 4.1226 -1.0517 6.1779 24 6 2.2424 0.0409 4.8271 25 1 -0.3634 0.5897 -0.8416 26 1 -0.3633 -1.0237 -0.0899 27 1 -0.3633 0.4341 0.9315 28 1 2.6347 -1.6779 -3.4738 29 1 1.1495 0.5387 2.5436 30 1 0.2440 -1.7016 4.1641 31 1 1.2283 -2.8092 3.1775 32 1 2.7366 -3.1905 5.1028 33 1 1.0573 -3.5988 5.5292 34 1 3.0994 1.2071 7.0610 35 1 2.0134 0.1275 8.0391 36 1 3.7749 -1.5556 8.3047 37 1 4.8914 -0.1467 8.0455 38 1 4.3506 -2.1000 5.9857 39 1 4.7529 -0.3687 5.6084 40 1 2.9847 0.8138 4.6274 41 1 1.2624 0.4993 4.9599 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597409107.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:41 Heat of formation + Delta-G solvation = -74.331384 kcal Electronic energy + Delta-G solvation = -21187.022696 eV Core-core repulsion = 18067.095765 eV Total energy + Delta-G solvation = -3119.926930 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.76117 -38.90280 -36.40372 -34.91405 -33.80508 -31.72205 -30.52323 -29.76378 -26.01936 -24.87960 -24.65107 -23.49667 -22.31818 -20.59726 -19.50689 -19.06058 -17.41229 -16.50106 -16.37767 -16.03295 -15.30992 -15.02762 -14.70743 -14.39144 -13.98029 -13.78714 -13.44726 -13.18022 -13.11958 -12.60461 -12.55865 -11.89901 -11.79341 -11.61292 -11.50507 -11.18572 -11.11349 -11.02125 -10.92115 -10.81842 -10.58051 -10.23605 -10.09291 -9.79742 -9.57186 -8.73862 -8.63497 -8.57571 -8.38867 -6.41686 -4.04441 3.32769 3.38898 3.46379 3.54894 3.56737 3.70425 4.29120 4.39384 4.47755 4.60024 4.68851 4.81535 4.98235 5.03464 5.18428 5.29409 5.32508 5.37778 5.45817 5.51506 5.60331 5.68260 5.73365 5.78001 5.83136 5.87261 6.01500 6.06599 6.15147 6.17879 6.25979 6.37468 6.49424 6.78248 6.97276 7.13967 7.20305 7.78097 8.26227 8.48867 9.02787 9.11274 9.66643 11.00115 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.037303 B = 0.004278 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.421570 B = 6542.786306 C = 6673.433196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.006 4.006 3 H 0.051 0.949 4 C -0.580 4.580 5 H 0.075 0.925 6 C 0.025 3.975 7 N -0.913 5.913 8 Si 1.056 2.944 9 H -0.283 1.283 10 H -0.281 1.281 11 H -0.289 1.289 12 C 0.528 3.472 13 O -0.536 6.536 14 N -0.743 5.743 15 C 0.146 3.854 16 H 0.084 0.916 17 C -0.166 4.166 18 C 0.065 3.935 19 O -0.358 6.358 20 C 0.098 3.902 21 C -0.124 4.124 22 C -0.135 4.135 23 C -0.166 4.166 24 C -0.140 4.140 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.030 0.970 28 H 0.269 0.731 29 H 0.394 0.606 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.022 3.396 22.022 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 H 0.069 0.931 4 C -0.619 4.619 5 H 0.093 0.907 6 C -0.179 4.179 7 N -0.548 5.548 8 Si 0.886 3.114 9 H -0.211 1.211 10 H -0.207 1.207 11 H -0.216 1.216 12 C 0.317 3.683 13 O -0.411 6.411 14 N -0.397 5.397 15 C 0.041 3.959 16 H 0.103 0.897 17 C -0.205 4.205 18 C -0.012 4.012 19 O -0.277 6.277 20 C 0.057 3.943 21 C -0.161 4.161 22 C -0.172 4.172 23 C -0.204 4.204 24 C -0.178 4.178 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.228 0.772 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.187 3.712 20.959 21.318 hybrid contribution 0.376 -0.789 0.815 1.195 sum -0.811 2.923 21.773 21.983 Atomic orbital electron populations 1.22073 0.97298 1.01595 0.98992 1.19375 0.93376 0.97520 0.92516 0.93119 1.22043 1.39323 1.10769 0.89717 0.90734 1.25784 0.96772 1.03426 0.91933 1.70775 1.36763 1.17088 1.30176 0.83845 0.76242 0.75715 0.75593 1.21053 1.20706 1.21597 1.21441 0.78589 0.84250 0.84042 1.90551 1.37450 1.26510 1.86572 1.46356 1.55450 1.32432 1.05437 1.20785 0.98461 0.92086 0.84580 0.89744 1.22587 1.00239 0.99286 0.98402 1.22568 1.01077 0.91157 0.86424 1.87878 1.66389 1.32787 1.40602 1.22158 0.89932 0.87770 0.94432 1.22948 0.98772 0.97844 0.96554 1.22786 0.98107 0.99895 0.96412 1.23519 0.96877 1.02657 0.97324 1.22327 1.03113 0.98460 0.93932 0.93021 0.92680 0.95142 0.92116 0.77186 0.91050 0.90058 0.92855 0.88595 0.88807 0.90503 0.89902 0.91379 0.90907 0.89192 0.90119 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.72 37.16 0.32 -2.58 16 2 C -0.01 -0.14 2.22 -92.92 -0.21 -0.35 16 3 H 0.05 1.16 6.66 -51.93 -0.35 0.81 16 4 C -0.58 -16.87 8.72 -34.43 -0.30 -17.17 16 5 H 0.07 2.46 7.00 -52.49 -0.37 2.09 16 6 C 0.02 0.72 5.43 -17.82 -0.10 0.62 16 7 N -0.91 -28.67 13.70 55.43 0.76 -27.91 16 8 Si 1.06 24.99 25.28 -169.99 -4.30 20.69 16 9 H -0.28 -6.32 6.80 56.52 0.38 -5.93 16 10 H -0.28 -6.00 6.37 56.52 0.36 -5.64 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 C 0.53 11.65 7.12 -10.98 -0.08 11.57 16 13 O -0.54 -13.95 15.13 5.56 0.08 -13.87 16 14 N -0.74 -12.19 4.95 -53.57 -0.26 -12.46 16 15 C 0.15 2.10 2.46 -67.69 -0.17 1.94 16 16 H 0.08 1.40 7.55 -51.93 -0.39 1.01 16 17 C -0.17 -2.27 5.67 -26.62 -0.15 -2.42 16 18 C 0.06 0.76 6.73 37.19 0.25 1.01 16 19 O -0.36 -4.33 10.45 -35.23 -0.37 -4.70 16 20 C 0.10 1.04 1.03 -90.30 -0.09 0.95 16 21 C -0.12 -1.07 7.47 -26.09 -0.19 -1.27 16 22 C -0.13 -1.15 8.02 -25.85 -0.21 -1.35 16 23 C -0.17 -1.66 7.11 -26.07 -0.19 -1.84 16 24 C -0.14 -1.56 4.74 -26.66 -0.13 -1.68 16 25 H 0.05 1.07 4.37 -51.93 -0.23 0.84 16 26 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.03 0.49 7.43 -51.93 -0.39 0.10 16 28 H 0.27 8.52 8.72 -40.82 -0.36 8.16 16 29 H 0.39 5.40 7.96 -40.82 -0.33 5.08 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 32 H 0.05 0.62 7.21 -51.93 -0.37 0.25 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.09 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.77 7.26 -51.93 -0.38 0.39 16 39 H 0.09 0.86 8.02 -51.93 -0.42 0.44 16 40 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 318.67 15.07 4.80 4.80 Total: -1.00 -33.42 318.67 -7.16 -40.58 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.64 Total: 5.44 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -1.23 Total: -12.58 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.49 Total: -40.36 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.28 Total: -18.57 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -4.30 Total: 20.69 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.42 -7.16 -40.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597409107.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.751 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds