Wall clock time and date at job start Mon Mar 30 2020 05:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47451 * 2 1 4 4 C 1.50703 * 109.47171 * 240.00129 * 2 1 3 5 5 H 1.07994 * 120.00613 * 245.38679 * 4 2 1 6 6 C 1.37890 * 119.99517 * 65.38310 * 4 2 1 7 7 N 1.31513 * 119.99469 * 185.16006 * 6 4 2 8 8 Si 1.86793 * 120.00163 * 4.88859 * 6 4 2 9 9 H 1.48496 * 109.47258 * 270.27332 * 8 6 4 10 10 H 1.48509 * 109.47235 * 30.27303 * 8 6 4 11 11 H 1.48495 * 109.47210 * 150.27273 * 8 6 4 12 12 C 1.50700 * 109.47509 * 120.00821 * 2 1 3 13 13 O 1.21278 * 120.00404 * 119.99435 * 12 2 1 14 14 N 1.34784 * 119.99501 * 299.99894 * 12 2 1 15 15 C 1.46498 * 120.00086 * 179.97438 * 14 12 2 16 16 H 1.09002 * 109.55199 * 35.00124 * 15 14 12 17 17 C 1.53153 * 109.55729 * 274.79644 * 15 14 12 18 18 C 1.53055 * 109.40721 * 181.62428 * 17 15 14 19 19 O 1.43050 * 109.52339 * 59.17324 * 18 17 15 20 20 C 1.42587 * 113.84412 * 301.31963 * 19 18 17 21 21 C 1.53389 * 113.62028 * 188.22336 * 20 19 18 22 22 C 1.53849 * 86.98311 * 89.43988 * 21 20 19 23 23 C 1.53427 * 113.56659 * 286.14910 * 20 19 18 24 24 C 1.52809 * 112.93625 * 57.11593 * 20 19 18 25 25 H 1.09000 * 109.47332 * 54.98459 * 1 2 3 26 26 H 1.09000 * 109.46809 * 174.98194 * 1 2 3 27 27 H 1.08999 * 109.46952 * 294.98654 * 1 2 3 28 28 H 0.96997 * 120.00204 * 354.72479 * 7 6 4 29 29 H 0.96996 * 119.99765 * 359.97438 * 14 12 2 30 30 H 1.08998 * 109.48035 * 301.50892 * 17 15 14 31 31 H 1.09009 * 109.48315 * 61.54039 * 17 15 14 32 32 H 1.08998 * 109.39097 * 299.18110 * 18 17 15 33 33 H 1.09004 * 109.48255 * 179.21363 * 18 17 15 34 34 H 1.09006 * 113.63071 * 203.96129 * 21 20 19 35 35 H 1.09001 * 113.63388 * 334.91477 * 21 20 19 36 36 H 1.09001 * 113.60942 * 270.59688 * 22 21 20 37 37 H 1.09005 * 113.68184 * 139.73148 * 22 21 20 38 38 H 1.08993 * 113.63330 * 25.02990 * 23 20 19 39 39 H 1.08997 * 113.62631 * 155.99146 * 23 20 19 40 40 H 1.08997 * 109.56415 * 186.22273 * 24 20 19 41 41 H 1.09004 * 109.56832 * 65.87228 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5796 -1.6364 -1.1339 6 6 1.7931 -0.1780 -2.4798 7 7 2.1415 -0.8469 -3.5572 8 14 0.9675 1.4897 -2.6419 9 1 -0.5051 1.3091 -2.7037 10 1 1.3143 2.3300 -1.4676 11 1 1.4370 2.1559 -3.8832 12 6 2.0324 -0.7106 1.2303 13 8 2.7296 -1.6966 1.1190 14 7 1.7068 -0.2502 2.4545 15 6 2.1947 -0.9411 3.6507 16 1 3.1939 -1.3342 3.4628 17 6 1.2478 -2.0933 3.9993 18 6 1.7382 -2.7873 5.2722 19 8 1.7811 -1.8426 6.3455 20 6 2.6265 -0.7223 6.0940 21 6 2.8271 0.1829 7.3160 22 6 4.0317 -0.7045 7.6739 23 6 4.1226 -1.0517 6.1779 24 6 2.2424 0.0409 4.8271 25 1 -0.3634 0.5897 -0.8416 26 1 -0.3633 -1.0237 -0.0899 27 1 -0.3633 0.4341 0.9315 28 1 2.6347 -1.6779 -3.4738 29 1 1.1495 0.5387 2.5436 30 1 0.2440 -1.7016 4.1641 31 1 1.2283 -2.8092 3.1775 32 1 2.7366 -3.1905 5.1028 33 1 1.0573 -3.5988 5.5292 34 1 3.0994 1.2071 7.0610 35 1 2.0134 0.1275 8.0391 36 1 3.7749 -1.5556 8.3047 37 1 4.8914 -0.1467 8.0455 38 1 4.3506 -2.1000 5.9857 39 1 4.7529 -0.3687 5.6084 40 1 2.9847 0.8138 4.6274 41 1 1.2624 0.4993 4.9599 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597409107.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:41 Heat of formation + Delta-G solvation = -98.957131 kcal Electronic energy + Delta-G solvation = -21188.090548 eV Core-core repulsion = 18067.095765 eV Total energy + Delta-G solvation = -3120.994783 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.72651 -40.48890 -37.37944 -36.20284 -35.82030 -33.56677 -32.05320 -30.70580 -26.80385 -26.74374 -25.93777 -24.46236 -23.87303 -21.69813 -21.12368 -20.02331 -19.54315 -17.95325 -17.52545 -17.10577 -16.58461 -16.19561 -15.93566 -15.66223 -15.30583 -15.05384 -14.89035 -14.66273 -14.33937 -14.01171 -13.84519 -13.42073 -13.29081 -13.00127 -12.76519 -12.52894 -12.39611 -12.07481 -12.00233 -11.90263 -11.79612 -11.69499 -11.56216 -11.04231 -10.82799 -10.74786 -10.56260 -10.24384 -10.04121 -8.77137 -6.40934 1.44922 1.57811 1.73068 1.82032 2.28127 2.52554 2.63221 3.10458 3.44792 3.61023 3.74646 3.86208 3.87174 3.97524 4.02045 4.17943 4.29025 4.36047 4.43700 4.46805 4.63890 4.64400 4.76606 4.77817 4.80544 4.83936 4.89210 4.97185 5.02934 5.06875 5.08263 5.17097 5.31746 5.40014 5.48014 5.55943 5.81363 6.03715 6.25153 6.57254 6.72957 7.39256 7.48645 8.63525 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.037303 B = 0.004278 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.421570 B = 6542.786306 C = 6673.433196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.012 4.012 3 H 0.072 0.928 4 C -0.590 4.590 5 H 0.013 0.987 6 C -0.031 4.031 7 N -0.947 5.947 8 Si 1.099 2.901 9 H -0.256 1.256 10 H -0.235 1.235 11 H -0.296 1.296 12 C 0.526 3.474 13 O -0.590 6.590 14 N -0.717 5.717 15 C 0.143 3.857 16 H 0.056 0.944 17 C -0.161 4.161 18 C 0.070 3.930 19 O -0.363 6.363 20 C 0.086 3.914 21 C -0.113 4.113 22 C -0.129 4.129 23 C -0.173 4.173 24 C -0.130 4.130 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.083 0.917 28 H 0.246 0.754 29 H 0.414 0.586 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.827 6.685 24.844 25.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.034 4.034 3 H 0.090 0.910 4 C -0.629 4.629 5 H 0.031 0.969 6 C -0.227 4.227 7 N -0.583 5.583 8 Si 0.919 3.081 9 H -0.181 1.181 10 H -0.159 1.159 11 H -0.223 1.223 12 C 0.315 3.685 13 O -0.470 6.470 14 N -0.370 5.370 15 C 0.038 3.962 16 H 0.074 0.926 17 C -0.200 4.200 18 C -0.007 4.007 19 O -0.282 6.282 20 C 0.045 3.955 21 C -0.151 4.151 22 C -0.167 4.167 23 C -0.211 4.211 24 C -0.168 4.168 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.251 0.749 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.014 7.014 23.863 25.054 hybrid contribution 1.024 -1.924 -0.011 2.180 sum -1.990 5.090 23.852 24.470 Atomic orbital electron populations 1.21958 0.94210 1.01162 1.02015 1.19357 0.95710 0.97606 0.90722 0.90996 1.22162 1.38622 1.09073 0.92994 0.96879 1.27607 0.96738 1.07080 0.91235 1.70939 1.38823 1.16971 1.31613 0.83418 0.76757 0.70836 0.77117 1.18086 1.15857 1.22275 1.21243 0.78190 0.83580 0.85530 1.90544 1.40034 1.28913 1.87465 1.46031 1.54300 1.32425 1.04285 1.20933 0.97121 0.93324 0.84796 0.92554 1.22514 1.00755 0.98465 0.98308 1.22532 1.01140 0.91460 0.85615 1.87881 1.66743 1.33187 1.40387 1.22413 0.89910 0.87867 0.95283 1.22978 0.98634 0.98293 0.95148 1.22764 0.98847 0.99960 0.95094 1.23576 0.96728 1.01967 0.98816 1.22305 1.04581 0.97732 0.92162 0.92549 0.94572 0.89865 0.94548 0.74913 0.89804 0.93138 0.93495 0.86873 0.86872 0.90156 0.90328 0.89838 0.92325 0.88870 0.88848 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 8.72 71.98 0.63 -4.50 16 2 C -0.01 -0.56 2.22 -12.29 -0.03 -0.58 16 3 H 0.07 3.02 6.66 -2.39 -0.02 3.01 16 4 C -0.59 -35.52 8.72 25.60 0.22 -35.29 16 5 H 0.01 0.92 7.00 -2.91 -0.02 0.89 16 6 C -0.03 -1.87 5.43 84.66 0.46 -1.41 16 7 N -0.95 -62.01 13.70 21.45 0.29 -61.72 16 8 Si 1.10 48.28 25.28 68.60 1.73 50.01 16 9 H -0.26 -10.11 6.80 99.48 0.68 -9.43 16 10 H -0.24 -8.56 6.37 99.48 0.63 -7.93 16 11 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 12 C 0.53 23.16 7.12 87.66 0.62 23.78 16 13 O -0.59 -32.29 15.13 -3.02 -0.05 -32.33 16 14 N -0.72 -22.03 4.95 -441.77 -2.19 -24.22 16 15 C 0.14 3.94 2.46 45.15 0.11 4.05 16 16 H 0.06 1.90 7.55 -2.39 -0.02 1.88 16 17 C -0.16 -4.28 5.67 30.66 0.17 -4.11 16 18 C 0.07 1.57 6.73 72.00 0.48 2.05 16 19 O -0.36 -8.02 10.45 -148.98 -1.56 -9.58 16 20 C 0.09 1.61 1.03 -10.58 -0.01 1.60 16 21 C -0.11 -1.56 7.47 31.01 0.23 -1.33 16 22 C -0.13 -1.88 8.02 31.17 0.25 -1.63 16 23 C -0.17 -3.20 7.11 31.02 0.22 -2.98 16 24 C -0.13 -2.48 4.74 30.64 0.15 -2.33 16 25 H 0.06 2.09 4.37 -2.39 -0.01 2.08 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 2.26 7.43 -2.39 -0.02 2.24 16 28 H 0.25 16.72 8.72 -92.71 -0.81 15.91 16 29 H 0.41 9.54 7.96 -92.71 -0.74 8.80 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.05 1.11 7.21 -2.39 -0.02 1.09 16 33 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.11 1.14 8.09 -2.38 -0.02 1.12 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.06 1.23 7.26 -2.39 -0.02 1.21 16 39 H 0.09 1.64 8.02 -2.39 -0.02 1.62 16 40 H 0.09 1.58 8.04 -2.39 -0.02 1.56 16 41 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -79.02 318.67 1.89 -77.13 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.14 Total: 23.39 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: 3.51 Total: -22.68 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -1.89 Total: -85.94 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -1.60 Total: -41.91 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 1.73 Total: 50.01 kcal Total: -79.02 1.89 -77.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597409107.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.828 kcal (2) G-P(sol) polarization free energy of solvation -79.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds