Wall clock time and date at job start Mon Mar 30 2020 05:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46600 * 2 1 4 4 C 1.50699 * 109.46962 * 119.99367 * 2 1 3 5 5 H 1.08001 * 119.99380 * 120.00031 * 4 2 1 6 6 C 1.37868 * 120.00349 * 300.00416 * 4 2 1 7 7 N 1.31520 * 120.00373 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 120.00183 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47272 * 89.99868 * 8 6 4 10 10 H 1.48501 * 109.47269 * 210.00319 * 8 6 4 11 11 H 1.48506 * 109.46792 * 330.00100 * 8 6 4 12 12 C 1.50695 * 109.47311 * 239.99779 * 2 1 3 13 13 O 1.21282 * 120.00210 * 239.99594 * 12 2 1 14 14 N 1.34773 * 120.00030 * 60.00034 * 12 2 1 15 15 C 1.46500 * 120.00056 * 179.97438 * 14 12 2 16 16 H 1.08996 * 109.55380 * 324.79847 * 15 14 12 17 17 C 1.53159 * 109.55520 * 84.99980 * 15 14 12 18 18 C 1.53042 * 109.41176 * 178.47003 * 17 15 14 19 19 O 1.43039 * 109.44992 * 300.67413 * 18 17 15 20 20 C 1.42594 * 113.84596 * 58.71894 * 19 18 17 21 21 C 1.53428 * 113.56695 * 73.88682 * 20 19 18 22 22 C 1.53840 * 86.97602 * 89.47866 * 21 20 19 23 23 C 1.53399 * 113.61767 * 171.80009 * 20 19 18 24 24 C 1.52804 * 112.94517 * 302.90811 * 20 19 18 25 25 H 1.08997 * 109.47194 * 299.99832 * 1 2 3 26 26 H 1.09000 * 109.47111 * 60.00413 * 1 2 3 27 27 H 1.09002 * 109.46600 * 179.97438 * 1 2 3 28 28 H 0.96998 * 120.00048 * 180.02562 * 7 6 4 29 29 H 0.97006 * 120.00285 * 359.97438 * 14 12 2 30 30 H 1.09001 * 109.47997 * 58.48514 * 17 15 14 31 31 H 1.09001 * 109.48595 * 298.45768 * 17 15 14 32 32 H 1.09002 * 109.47651 * 60.67081 * 18 17 15 33 33 H 1.09005 * 109.47596 * 180.68267 * 18 17 15 34 34 H 1.08998 * 113.63084 * 204.00016 * 21 20 19 35 35 H 1.09003 * 113.63124 * 334.96148 * 21 20 19 36 36 H 1.09006 * 113.60548 * 270.60023 * 22 21 20 37 37 H 1.08995 * 113.68260 * 139.73589 * 22 21 20 38 38 H 1.08998 * 113.62772 * 25.09375 * 23 20 19 39 39 H 1.08991 * 113.63222 * 155.95666 * 23 20 19 40 40 H 1.09003 * 109.56371 * 294.10466 * 24 20 19 41 41 H 1.09004 * 109.56521 * 173.76461 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 2.1380 -0.8588 3.5566 8 14 0.6258 1.2800 2.6541 9 1 -0.8021 0.8747 2.6992 10 1 0.9771 1.9956 3.9070 11 1 0.8491 2.1774 1.4921 12 6 2.0324 -0.7104 -1.2304 13 8 2.7298 -1.6964 -1.1191 14 7 1.7069 -0.2500 -2.4545 15 6 2.1957 -0.9403 -3.6506 16 1 3.1965 -1.3296 -3.4638 17 6 1.2525 -2.0963 -3.9968 18 6 1.7450 -2.7913 -5.2683 19 8 1.7805 -1.8482 -6.3432 20 6 2.6206 -0.7230 -6.0954 21 6 4.1182 -1.0444 -6.1828 22 6 4.0217 -0.7000 -7.6790 23 6 2.8133 0.1815 -7.3192 24 6 2.2358 0.0401 -4.8287 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.9033 -0.5276 4.4376 29 1 1.1489 0.5384 -2.5436 30 1 0.2471 -1.7085 -4.1606 31 1 1.2368 -2.8115 -3.1744 32 1 2.7459 -3.1891 -5.1006 33 1 1.0676 -3.6066 -5.5225 34 1 4.7464 -0.3572 -5.6160 35 1 4.3525 -2.0913 -5.9896 36 1 3.7675 -1.5534 -8.3078 37 1 4.8761 -0.1372 -8.0548 38 1 1.9980 0.1207 -8.0401 39 1 3.0793 1.2078 -7.0665 40 1 1.2532 0.4934 -4.9599 41 1 2.9746 0.8171 -4.6320 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597409109.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:45 Heat of formation + Delta-G solvation = -65.860559 kcal Electronic energy + Delta-G solvation = -21181.472489 eV Core-core repulsion = 18061.912881 eV Total energy + Delta-G solvation = -3119.559608 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.74675 -38.90326 -36.39116 -34.90227 -33.81785 -31.71441 -30.60495 -29.75494 -26.00496 -25.13581 -24.75131 -23.48124 -22.55611 -20.62040 -19.55091 -19.06897 -16.79132 -16.54128 -16.32510 -15.83585 -15.40363 -14.98268 -14.67175 -14.56526 -14.08606 -13.90583 -13.51506 -13.12471 -13.08605 -12.67421 -12.52319 -12.29933 -11.77513 -11.61056 -11.58382 -11.10067 -11.09373 -10.98422 -10.90049 -10.80795 -10.60971 -10.33499 -10.07761 -9.63759 -9.55932 -9.10064 -8.66892 -8.58157 -8.54765 -6.05105 -4.05329 3.22992 3.30318 3.36108 3.48007 3.57016 3.70504 4.30568 4.37627 4.40792 4.61426 4.70295 4.83371 4.99601 5.05619 5.20022 5.24581 5.31196 5.39294 5.47201 5.53048 5.61916 5.69376 5.74236 5.78614 5.84662 5.86964 6.02005 6.08064 6.10912 6.18217 6.26233 6.34584 6.45738 6.72372 6.97874 7.15700 7.15985 7.54912 8.12936 8.55658 9.08720 9.15873 9.54035 11.07905 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.038549 B = 0.004246 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.179238 B = 6592.361173 C = 6696.069020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.006 4.006 3 H 0.051 0.949 4 C -0.505 4.505 5 H 0.093 0.907 6 C 0.070 3.930 7 N -0.896 5.896 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.268 1.268 12 C 0.529 3.471 13 O -0.531 6.531 14 N -0.743 5.743 15 C 0.147 3.853 16 H 0.086 0.914 17 C -0.167 4.167 18 C 0.065 3.935 19 O -0.358 6.358 20 C 0.098 3.902 21 C -0.166 4.166 22 C -0.135 4.135 23 C -0.124 4.124 24 C -0.140 4.140 25 H 0.048 0.952 26 H 0.032 0.968 27 H 0.057 0.943 28 H 0.264 0.736 29 H 0.394 0.606 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.173 3.235 -21.686 21.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 H 0.069 0.931 4 C -0.543 4.543 5 H 0.111 0.889 6 C -0.132 4.132 7 N -0.535 5.535 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.317 3.683 13 O -0.405 6.405 14 N -0.397 5.397 15 C 0.041 3.959 16 H 0.104 0.896 17 C -0.206 4.206 18 C -0.012 4.012 19 O -0.277 6.277 20 C 0.057 3.943 21 C -0.203 4.203 22 C -0.172 4.172 23 C -0.162 4.162 24 C -0.178 4.178 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.228 0.772 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.740 2.468 -21.534 21.688 hybrid contribution -0.864 1.177 0.563 1.565 sum -1.604 3.645 -20.971 21.346 Atomic orbital electron populations 1.22107 0.97352 1.01459 0.99188 1.19316 0.93183 0.97539 0.92684 0.93099 1.20940 1.32053 1.14089 0.87246 0.88909 1.24984 0.95840 0.96565 0.95766 1.69885 1.45480 1.40227 0.97861 0.86909 0.80699 0.83837 0.77046 1.20540 1.22319 1.19296 1.21278 0.78729 0.84279 0.83979 1.90574 1.37190 1.26276 1.86489 1.46321 1.55417 1.32492 1.05432 1.20790 0.98536 0.92048 0.84491 0.89624 1.22591 1.00220 0.99277 0.98473 1.22573 1.01106 0.91186 0.86374 1.87877 1.66635 1.32518 1.40670 1.22156 0.90016 0.87688 0.94417 1.23517 0.96853 1.02701 0.97275 1.22782 0.98070 0.99912 0.96440 1.22948 0.98791 0.97865 0.96552 1.22327 1.03094 0.98479 0.93946 0.93314 0.94878 0.92421 0.92576 0.77216 0.91066 0.89951 0.92795 0.88606 0.89174 0.90872 0.89906 0.91394 0.90541 0.88826 0.90651 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.57 37.16 0.32 -2.62 16 2 C -0.01 -0.13 2.23 -92.92 -0.21 -0.34 16 3 H 0.05 1.15 7.20 -51.93 -0.37 0.78 16 4 C -0.51 -14.63 8.96 -34.44 -0.31 -14.94 16 5 H 0.09 3.07 7.00 -52.49 -0.37 2.70 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 8 Si 0.88 21.34 24.37 -169.99 -4.14 17.20 16 9 H -0.28 -6.50 6.87 56.52 0.39 -6.12 16 10 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.27 -6.00 6.53 56.52 0.37 -5.63 16 12 C 0.53 11.44 7.12 -10.99 -0.08 11.36 16 13 O -0.53 -13.56 15.13 5.56 0.08 -13.47 16 14 N -0.74 -11.95 4.98 -53.57 -0.27 -12.22 16 15 C 0.15 2.07 2.46 -67.68 -0.17 1.90 16 16 H 0.09 1.39 7.56 -51.93 -0.39 1.00 16 17 C -0.17 -2.24 5.66 -26.63 -0.15 -2.39 16 18 C 0.06 0.75 6.73 37.18 0.25 1.00 16 19 O -0.36 -4.30 10.45 -35.23 -0.37 -4.67 16 20 C 0.10 1.03 1.03 -90.29 -0.09 0.94 16 21 C -0.17 -1.63 7.12 -26.07 -0.19 -1.82 16 22 C -0.13 -1.14 8.02 -25.85 -0.21 -1.35 16 23 C -0.12 -1.07 7.47 -26.08 -0.19 -1.26 16 24 C -0.14 -1.54 4.74 -26.67 -0.13 -1.66 16 25 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 26 H 0.03 0.53 7.56 -51.93 -0.39 0.14 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.39 5.30 8.02 -40.82 -0.33 4.98 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.05 0.62 7.21 -51.93 -0.37 0.24 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 0.85 8.02 -51.93 -0.42 0.43 16 35 H 0.07 0.76 7.26 -51.93 -0.38 0.38 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 LS Contribution 317.61 15.07 4.79 4.79 Total: -1.00 -33.10 317.61 -6.97 -40.07 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -6.59 Total: 4.56 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -1.25 Total: -9.25 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.51 Total: -39.22 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.28 Total: -18.14 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.14 Total: 17.20 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.10 -6.97 -40.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597409109.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.791 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds