Wall clock time and date at job start Mon Mar 30 2020 05:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46600 * 2 1 4 4 C 1.50699 * 109.46962 * 119.99367 * 2 1 3 5 5 H 1.08001 * 119.99380 * 120.00031 * 4 2 1 6 6 C 1.37868 * 120.00349 * 300.00416 * 4 2 1 7 7 N 1.31520 * 120.00373 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 120.00183 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47272 * 89.99868 * 8 6 4 10 10 H 1.48501 * 109.47269 * 210.00319 * 8 6 4 11 11 H 1.48506 * 109.46792 * 330.00100 * 8 6 4 12 12 C 1.50695 * 109.47311 * 239.99779 * 2 1 3 13 13 O 1.21282 * 120.00210 * 239.99594 * 12 2 1 14 14 N 1.34773 * 120.00030 * 60.00034 * 12 2 1 15 15 C 1.46500 * 120.00056 * 179.97438 * 14 12 2 16 16 H 1.08996 * 109.55380 * 324.79847 * 15 14 12 17 17 C 1.53159 * 109.55520 * 84.99980 * 15 14 12 18 18 C 1.53042 * 109.41176 * 178.47003 * 17 15 14 19 19 O 1.43039 * 109.44992 * 300.67413 * 18 17 15 20 20 C 1.42594 * 113.84596 * 58.71894 * 19 18 17 21 21 C 1.53428 * 113.56695 * 73.88682 * 20 19 18 22 22 C 1.53840 * 86.97602 * 89.47866 * 21 20 19 23 23 C 1.53399 * 113.61767 * 171.80009 * 20 19 18 24 24 C 1.52804 * 112.94517 * 302.90811 * 20 19 18 25 25 H 1.08997 * 109.47194 * 299.99832 * 1 2 3 26 26 H 1.09000 * 109.47111 * 60.00413 * 1 2 3 27 27 H 1.09002 * 109.46600 * 179.97438 * 1 2 3 28 28 H 0.96998 * 120.00048 * 180.02562 * 7 6 4 29 29 H 0.97006 * 120.00285 * 359.97438 * 14 12 2 30 30 H 1.09001 * 109.47997 * 58.48514 * 17 15 14 31 31 H 1.09001 * 109.48595 * 298.45768 * 17 15 14 32 32 H 1.09002 * 109.47651 * 60.67081 * 18 17 15 33 33 H 1.09005 * 109.47596 * 180.68267 * 18 17 15 34 34 H 1.08998 * 113.63084 * 204.00016 * 21 20 19 35 35 H 1.09003 * 113.63124 * 334.96148 * 21 20 19 36 36 H 1.09006 * 113.60548 * 270.60023 * 22 21 20 37 37 H 1.08995 * 113.68260 * 139.73589 * 22 21 20 38 38 H 1.08998 * 113.62772 * 25.09375 * 23 20 19 39 39 H 1.08991 * 113.63222 * 155.95666 * 23 20 19 40 40 H 1.09003 * 109.56371 * 294.10466 * 24 20 19 41 41 H 1.09004 * 109.56521 * 173.76461 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 2.1380 -0.8588 3.5566 8 14 0.6258 1.2800 2.6541 9 1 -0.8021 0.8747 2.6992 10 1 0.9771 1.9956 3.9070 11 1 0.8491 2.1774 1.4921 12 6 2.0324 -0.7104 -1.2304 13 8 2.7298 -1.6964 -1.1191 14 7 1.7069 -0.2500 -2.4545 15 6 2.1957 -0.9403 -3.6506 16 1 3.1965 -1.3296 -3.4638 17 6 1.2525 -2.0963 -3.9968 18 6 1.7450 -2.7913 -5.2683 19 8 1.7805 -1.8482 -6.3432 20 6 2.6206 -0.7230 -6.0954 21 6 4.1182 -1.0444 -6.1828 22 6 4.0217 -0.7000 -7.6790 23 6 2.8133 0.1815 -7.3192 24 6 2.2358 0.0401 -4.8287 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.9033 -0.5276 4.4376 29 1 1.1489 0.5384 -2.5436 30 1 0.2471 -1.7085 -4.1606 31 1 1.2368 -2.8115 -3.1744 32 1 2.7459 -3.1891 -5.1006 33 1 1.0676 -3.6066 -5.5225 34 1 4.7464 -0.3572 -5.6160 35 1 4.3525 -2.0913 -5.9896 36 1 3.7675 -1.5534 -8.3078 37 1 4.8761 -0.1372 -8.0548 38 1 1.9980 0.1207 -8.0401 39 1 3.0793 1.2078 -7.0665 40 1 1.2532 0.4934 -4.9599 41 1 2.9746 0.8171 -4.6320 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597409109.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:44 Heat of formation + Delta-G solvation = -90.270589 kcal Electronic energy + Delta-G solvation = -21182.530987 eV Core-core repulsion = 18061.912881 eV Total energy + Delta-G solvation = -3120.618106 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.69887 -40.46052 -37.35225 -36.16578 -35.78129 -33.58262 -32.09666 -30.67915 -27.12301 -26.72358 -25.99968 -24.45661 -24.02809 -21.68323 -21.13259 -19.99628 -18.81953 -17.91911 -17.42609 -17.04552 -16.82376 -16.22844 -15.99399 -15.83097 -15.37718 -14.99990 -14.86249 -14.63427 -14.40416 -14.09228 -13.97017 -13.42164 -13.26948 -12.84909 -12.72786 -12.55393 -12.48167 -12.16634 -12.03575 -11.87998 -11.77082 -11.67525 -11.46813 -11.22906 -11.01724 -10.77802 -10.58086 -10.21700 -10.00246 -8.27286 -6.35348 1.33365 1.39948 1.51314 1.85613 2.30029 2.34722 2.65964 3.06430 3.47501 3.63312 3.78170 3.88527 3.89742 3.99365 4.05697 4.18448 4.31180 4.39286 4.42097 4.48436 4.60364 4.67446 4.75518 4.79909 4.82615 4.85754 4.92454 4.97624 5.04816 5.05488 5.10080 5.19693 5.34063 5.41992 5.44559 5.52880 5.59754 6.26193 6.28171 6.68357 6.85707 7.26346 7.50856 8.90568 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.038549 B = 0.004246 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.179238 B = 6592.361173 C = 6696.069020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.010 4.010 3 H 0.070 0.930 4 C -0.522 4.522 5 H 0.028 0.972 6 C 0.005 3.995 7 N -0.954 5.954 8 Si 0.962 3.038 9 H -0.261 1.261 10 H -0.300 1.300 11 H -0.229 1.229 12 C 0.528 3.472 13 O -0.584 6.584 14 N -0.717 5.717 15 C 0.143 3.857 16 H 0.058 0.942 17 C -0.162 4.162 18 C 0.069 3.931 19 O -0.364 6.364 20 C 0.086 3.914 21 C -0.173 4.173 22 C -0.130 4.130 23 C -0.114 4.114 24 C -0.130 4.130 25 H 0.045 0.955 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.267 0.733 29 H 0.413 0.587 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.147 6.401 -24.325 25.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 H 0.088 0.912 4 C -0.560 4.560 5 H 0.046 0.954 6 C -0.191 4.191 7 N -0.594 5.594 8 Si 0.786 3.214 9 H -0.187 1.187 10 H -0.228 1.228 11 H -0.152 1.152 12 C 0.317 3.683 13 O -0.463 6.463 14 N -0.371 5.371 15 C 0.039 3.961 16 H 0.077 0.923 17 C -0.201 4.201 18 C -0.008 4.008 19 O -0.283 6.283 20 C 0.046 3.954 21 C -0.210 4.210 22 C -0.167 4.167 23 C -0.151 4.151 24 C -0.168 4.168 25 H 0.064 0.936 26 H 0.105 0.895 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.250 0.750 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.131 0.869 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.131 0.869 40 H 0.110 0.890 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.739 5.665 -24.251 25.054 hybrid contribution -0.145 0.076 1.354 1.364 sum -2.884 5.741 -22.897 23.781 Atomic orbital electron populations 1.22007 0.94430 1.01537 1.01579 1.19274 0.95427 0.97502 0.90912 0.91241 1.21105 1.31613 1.12811 0.90460 0.95406 1.26057 0.97482 1.00791 0.94778 1.70085 1.47686 1.42902 0.98740 0.85680 0.78692 0.78951 0.78058 1.18677 1.22800 1.15224 1.21062 0.78316 0.83592 0.85368 1.90566 1.39729 1.28647 1.87355 1.46006 1.54293 1.32484 1.04277 1.20935 0.97238 0.93262 0.84699 0.92345 1.22519 1.00719 0.98479 0.98372 1.22540 1.01176 0.91484 0.85586 1.87878 1.66989 1.32932 1.40489 1.22406 0.90011 0.87769 0.95257 1.23572 0.96696 1.02043 0.98716 1.22760 0.98785 0.99974 0.95172 1.22978 0.98651 0.98325 0.95173 1.22303 1.04525 0.97777 0.92200 0.93606 0.89538 0.93722 0.92416 0.74988 0.89860 0.92927 0.93400 0.86923 0.88830 0.92251 0.90345 0.89876 0.90240 0.86916 0.88965 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 8.57 71.98 0.62 -4.60 16 2 C -0.01 -0.43 2.23 -12.29 -0.03 -0.46 16 3 H 0.07 2.93 7.20 -2.39 -0.02 2.91 16 4 C -0.52 -31.38 8.96 25.60 0.23 -31.15 16 5 H 0.03 1.98 7.00 -2.91 -0.02 1.96 16 6 C 0.01 0.30 5.45 84.65 0.46 0.76 16 7 N -0.95 -61.66 13.96 21.44 0.30 -61.36 16 8 Si 0.96 43.03 24.37 68.60 1.67 44.70 16 9 H -0.26 -10.93 6.87 99.48 0.68 -10.24 16 10 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 11 H -0.23 -8.79 6.53 99.48 0.65 -8.14 16 12 C 0.53 22.91 7.12 87.66 0.62 23.54 16 13 O -0.58 -31.48 15.13 -3.03 -0.05 -31.52 16 14 N -0.72 -21.69 4.98 -441.78 -2.20 -23.89 16 15 C 0.14 3.89 2.46 45.15 0.11 4.00 16 16 H 0.06 1.94 7.56 -2.39 -0.02 1.92 16 17 C -0.16 -4.23 5.66 30.66 0.17 -4.06 16 18 C 0.07 1.54 6.73 72.00 0.48 2.02 16 19 O -0.36 -8.00 10.45 -148.98 -1.56 -9.56 16 20 C 0.09 1.60 1.03 -10.58 -0.01 1.59 16 21 C -0.17 -3.16 7.12 31.02 0.22 -2.94 16 22 C -0.13 -1.88 8.02 31.16 0.25 -1.63 16 23 C -0.11 -1.57 7.47 31.01 0.23 -1.34 16 24 C -0.13 -2.46 4.74 30.64 0.15 -2.31 16 25 H 0.05 1.76 3.27 -2.39 -0.01 1.76 16 26 H 0.09 2.33 7.56 -2.39 -0.02 2.31 16 27 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 29 H 0.41 9.39 8.02 -92.70 -0.74 8.65 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.12 7.21 -2.39 -0.02 1.10 16 33 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.09 1.63 8.02 -2.39 -0.02 1.61 16 35 H 0.06 1.23 7.26 -2.39 -0.02 1.22 16 36 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.11 1.14 8.09 -2.39 -0.02 1.13 16 40 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.09 1.56 8.04 -2.38 -0.02 1.54 16 Total: -1.00 -77.92 317.61 1.87 -76.05 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.20 Total: 22.15 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: 3.51 Total: -16.56 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -1.90 Total: -85.26 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -1.60 Total: -41.08 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.67 Total: 44.70 kcal Total: -77.92 1.87 -76.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597409109.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.225 kcal (2) G-P(sol) polarization free energy of solvation -77.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds