Wall clock time and date at job start Mon Mar 30 2020 05:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46901 * 2 1 4 4 C 1.50702 * 109.47061 * 119.99919 * 2 1 3 5 5 H 1.08000 * 119.99551 * 120.00076 * 4 2 1 6 6 C 1.37872 * 120.00318 * 300.00143 * 4 2 1 7 7 N 1.31520 * 119.99550 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00123 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47059 * 60.00121 * 8 6 4 10 10 H 1.48497 * 109.46799 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.46837 * 299.99940 * 8 6 4 12 12 C 1.50703 * 109.47301 * 240.00186 * 2 1 3 13 13 O 1.21279 * 119.99897 * 240.00037 * 12 2 1 14 14 N 1.34773 * 120.00111 * 59.99709 * 12 2 1 15 15 C 1.46498 * 120.00284 * 180.02562 * 14 12 2 16 16 H 1.09002 * 109.55336 * 35.00097 * 15 14 12 17 17 C 1.53164 * 109.63688 * 274.74387 * 15 14 12 18 18 C 1.53047 * 109.40422 * 181.47451 * 17 15 14 19 19 O 1.43044 * 109.44615 * 59.32461 * 18 17 15 20 20 C 1.42573 * 113.84750 * 301.27059 * 19 18 17 21 21 C 1.53396 * 113.62546 * 188.22295 * 20 19 18 22 22 C 1.53854 * 86.98606 * 89.43431 * 21 20 19 23 23 C 1.53433 * 113.56580 * 286.14194 * 20 19 18 24 24 C 1.52814 * 112.94065 * 57.10863 * 20 19 18 25 25 H 1.09002 * 109.47185 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47161 * 299.99814 * 1 2 3 27 27 H 1.08996 * 109.46891 * 60.00462 * 1 2 3 28 28 H 0.97003 * 119.99584 * 180.02562 * 7 6 4 29 29 H 0.97006 * 120.00293 * 0.02562 * 14 12 2 30 30 H 1.09001 * 109.47942 * 301.45165 * 17 15 14 31 31 H 1.09000 * 109.47870 * 61.49355 * 17 15 14 32 32 H 1.09000 * 109.47752 * 299.33007 * 18 17 15 33 33 H 1.09006 * 109.47991 * 179.32225 * 18 17 15 34 34 H 1.08993 * 113.63083 * 203.96501 * 21 20 19 35 35 H 1.09004 * 113.62297 * 334.91392 * 21 20 19 36 36 H 1.08994 * 113.60417 * 270.60653 * 22 21 20 37 37 H 1.08999 * 113.67700 * 139.73542 * 22 21 20 38 38 H 1.08999 * 113.62821 * 25.03352 * 23 20 19 39 39 H 1.08996 * 113.62606 * 155.98627 * 23 20 19 40 40 H 1.08995 * 109.56507 * 186.22247 * 24 20 19 41 41 H 1.09000 * 109.56146 * 65.87383 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.8075 -1.1189 4.0077 10 1 1.8269 -0.4200 5.2204 11 1 1.8281 -2.5198 4.0081 12 6 2.0324 -0.7104 -1.2305 13 8 2.7297 -1.6964 -1.1192 14 7 1.7068 -0.2499 -2.4546 15 6 2.1947 -0.9408 -3.6508 16 1 2.2315 -2.0138 -3.4628 17 6 3.5964 -0.4335 -4.0024 18 6 4.0859 -1.1317 -5.2734 19 8 3.1808 -0.8567 -6.3464 20 6 1.8422 -1.2771 -6.0935 21 6 0.9212 -1.1642 -7.3150 22 6 1.3531 -2.5971 -7.6715 23 6 1.6507 -2.7972 -6.1754 24 6 1.2527 -0.6579 -4.8269 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 0.7087 1.1612 3.4844 29 1 1.1494 0.5389 -2.5436 30 1 3.5621 0.6431 -4.1693 31 1 4.2789 -0.6527 -3.1813 32 1 4.1311 -2.2073 -5.1027 33 1 5.0786 -0.7627 -5.5315 34 1 -0.1347 -1.0769 -7.0594 35 1 1.2459 -0.4170 -8.0393 36 1 2.2407 -2.6412 -8.3027 37 1 0.5391 -3.2204 -8.0417 38 1 2.5621 -3.3633 -5.9831 39 1 0.7964 -3.1613 -5.6048 40 1 0.2759 -1.0978 -4.6261 41 1 1.1495 0.4189 -4.9610 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597409110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:46 Heat of formation + Delta-G solvation = -75.752079 kcal Electronic energy + Delta-G solvation = -21115.634860 eV Core-core repulsion = 17995.646324 eV Total energy + Delta-G solvation = -3119.988536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.69142 -38.73664 -36.33478 -34.80807 -33.71068 -31.47491 -30.02966 -29.63477 -25.96646 -25.13496 -24.55531 -23.43272 -22.36698 -20.55763 -19.49337 -19.01298 -16.58714 -16.32745 -16.08719 -15.85326 -15.26414 -14.89424 -14.59361 -14.40956 -13.97335 -13.81146 -13.44874 -13.10155 -12.79099 -12.54362 -12.40613 -11.72226 -11.62950 -11.43529 -11.04960 -11.01426 -10.97806 -10.87776 -10.84061 -10.70466 -10.67921 -10.23671 -10.07761 -9.92625 -9.51361 -8.97611 -8.57953 -8.43198 -8.29908 -6.02200 -4.05346 3.36608 3.38981 3.44326 3.52658 3.73153 3.84705 4.35176 4.44936 4.48397 4.65090 4.75744 4.89341 5.06398 5.10514 5.26171 5.31007 5.36206 5.45661 5.51381 5.56835 5.67188 5.73223 5.80717 5.85949 5.89987 6.02591 6.12050 6.16414 6.26202 6.43217 6.62655 6.83441 6.93632 7.11555 7.20113 7.48654 7.76560 8.00126 8.16518 8.46947 9.03317 9.25870 9.60209 11.05397 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.039098 B = 0.004078 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.972352 B = 6864.717363 C = 7068.870578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.052 0.948 4 C -0.501 4.501 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.520 3.480 13 O -0.547 6.547 14 N -0.742 5.742 15 C 0.146 3.854 16 H 0.083 0.917 17 C -0.166 4.166 18 C 0.065 3.935 19 O -0.358 6.358 20 C 0.098 3.902 21 C -0.124 4.124 22 C -0.135 4.135 23 C -0.166 4.166 24 C -0.140 4.140 25 H 0.030 0.970 26 H 0.093 0.907 27 H 0.011 0.989 28 H 0.261 0.739 29 H 0.395 0.605 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.601 -1.800 -18.783 18.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.069 0.931 4 C -0.539 4.539 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.310 3.690 13 O -0.423 6.423 14 N -0.395 5.395 15 C 0.041 3.959 16 H 0.102 0.898 17 C -0.205 4.205 18 C -0.012 4.012 19 O -0.277 6.277 20 C 0.057 3.943 21 C -0.161 4.161 22 C -0.172 4.172 23 C -0.204 4.204 24 C -0.178 4.178 25 H 0.049 0.951 26 H 0.111 0.889 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.229 0.771 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.112 -2.329 -18.693 18.838 hybrid contribution 0.014 -0.083 1.114 1.117 sum -0.098 -2.412 -17.579 17.744 Atomic orbital electron populations 1.21734 0.96579 0.99745 1.00891 1.18873 0.94135 0.96820 0.89428 0.93067 1.21105 1.30978 1.12795 0.89036 0.90881 1.24950 0.95129 0.95075 0.99097 1.69866 1.37101 1.23109 1.23606 0.86508 0.79277 0.79711 0.81657 1.20206 1.21379 1.20220 1.21982 0.78319 0.84159 0.84519 1.90518 1.38022 1.26951 1.86777 1.46361 1.55277 1.32514 1.05374 1.20762 0.92205 0.98212 0.84747 0.89847 1.22592 0.98352 1.01262 0.98337 1.22569 0.92789 0.99352 0.86493 1.87868 1.17205 1.82049 1.40601 1.22156 0.83848 0.93781 0.94472 1.22950 0.98666 0.97928 0.96599 1.22786 1.01441 0.96553 0.96438 1.23518 1.02703 0.96858 0.97272 1.22327 0.99428 1.02160 0.93931 0.95067 0.88875 0.96953 0.92932 0.77103 0.91062 0.90069 0.92886 0.88666 0.88801 0.90530 0.89935 0.91415 0.90938 0.89194 0.90148 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.87 37.16 0.33 -2.69 16 2 C 0.03 0.71 2.64 -92.92 -0.25 0.47 16 3 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 4 C -0.50 -14.27 8.37 -34.44 -0.29 -14.56 16 5 H 0.07 2.20 6.75 -52.49 -0.35 1.84 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.27 11.32 55.43 0.63 -24.65 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.52 11.81 7.12 -10.99 -0.08 11.73 16 13 O -0.55 -14.17 15.12 5.56 0.08 -14.08 16 14 N -0.74 -12.86 4.98 -53.56 -0.27 -13.12 16 15 C 0.15 2.19 2.46 -67.68 -0.17 2.02 16 16 H 0.08 1.42 7.54 -51.93 -0.39 1.03 16 17 C -0.17 -2.35 5.67 -26.62 -0.15 -2.50 16 18 C 0.06 0.78 6.73 37.18 0.25 1.03 16 19 O -0.36 -4.48 10.45 -35.23 -0.37 -4.85 16 20 C 0.10 1.09 1.03 -90.29 -0.09 1.00 16 21 C -0.12 -1.13 7.47 -26.08 -0.19 -1.33 16 22 C -0.13 -1.19 8.02 -25.85 -0.21 -1.40 16 23 C -0.17 -1.71 7.11 -26.07 -0.19 -1.90 16 24 C -0.14 -1.66 4.74 -26.66 -0.13 -1.78 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 27 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.40 5.99 8.02 -40.82 -0.33 5.66 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.05 0.63 7.21 -51.93 -0.37 0.26 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.78 7.26 -51.93 -0.38 0.41 16 39 H 0.09 0.90 8.02 -51.93 -0.42 0.48 16 40 H 0.08 0.89 8.04 -51.93 -0.42 0.48 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 324.42 15.07 4.89 4.89 Total: -1.00 -31.00 324.42 -8.03 -39.03 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.73 Total: 4.26 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -1.25 Total: -8.38 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.36 Total: -37.77 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.28 Total: -18.93 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.00 -8.03 -39.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597409110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.719 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds