Wall clock time and date at job start Mon Mar 30 2020 05:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46901 * 2 1 4 4 C 1.50702 * 109.47061 * 119.99919 * 2 1 3 5 5 H 1.08000 * 119.99551 * 120.00076 * 4 2 1 6 6 C 1.37872 * 120.00318 * 300.00143 * 4 2 1 7 7 N 1.31520 * 119.99550 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00123 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47059 * 60.00121 * 8 6 4 10 10 H 1.48497 * 109.46799 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.46837 * 299.99940 * 8 6 4 12 12 C 1.50703 * 109.47301 * 240.00186 * 2 1 3 13 13 O 1.21279 * 119.99897 * 240.00037 * 12 2 1 14 14 N 1.34773 * 120.00111 * 59.99709 * 12 2 1 15 15 C 1.46498 * 120.00284 * 180.02562 * 14 12 2 16 16 H 1.09002 * 109.55336 * 35.00097 * 15 14 12 17 17 C 1.53164 * 109.63688 * 274.74387 * 15 14 12 18 18 C 1.53047 * 109.40422 * 181.47451 * 17 15 14 19 19 O 1.43044 * 109.44615 * 59.32461 * 18 17 15 20 20 C 1.42573 * 113.84750 * 301.27059 * 19 18 17 21 21 C 1.53396 * 113.62546 * 188.22295 * 20 19 18 22 22 C 1.53854 * 86.98606 * 89.43431 * 21 20 19 23 23 C 1.53433 * 113.56580 * 286.14194 * 20 19 18 24 24 C 1.52814 * 112.94065 * 57.10863 * 20 19 18 25 25 H 1.09002 * 109.47185 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47161 * 299.99814 * 1 2 3 27 27 H 1.08996 * 109.46891 * 60.00462 * 1 2 3 28 28 H 0.97003 * 119.99584 * 180.02562 * 7 6 4 29 29 H 0.97006 * 120.00293 * 0.02562 * 14 12 2 30 30 H 1.09001 * 109.47942 * 301.45165 * 17 15 14 31 31 H 1.09000 * 109.47870 * 61.49355 * 17 15 14 32 32 H 1.09000 * 109.47752 * 299.33007 * 18 17 15 33 33 H 1.09006 * 109.47991 * 179.32225 * 18 17 15 34 34 H 1.08993 * 113.63083 * 203.96501 * 21 20 19 35 35 H 1.09004 * 113.62297 * 334.91392 * 21 20 19 36 36 H 1.08994 * 113.60417 * 270.60653 * 22 21 20 37 37 H 1.08999 * 113.67700 * 139.73542 * 22 21 20 38 38 H 1.08999 * 113.62821 * 25.03352 * 23 20 19 39 39 H 1.08996 * 113.62606 * 155.98627 * 23 20 19 40 40 H 1.08995 * 109.56507 * 186.22247 * 24 20 19 41 41 H 1.09000 * 109.56146 * 65.87383 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.8075 -1.1189 4.0077 10 1 1.8269 -0.4200 5.2204 11 1 1.8281 -2.5198 4.0081 12 6 2.0324 -0.7104 -1.2305 13 8 2.7297 -1.6964 -1.1192 14 7 1.7068 -0.2499 -2.4546 15 6 2.1947 -0.9408 -3.6508 16 1 2.2315 -2.0138 -3.4628 17 6 3.5964 -0.4335 -4.0024 18 6 4.0859 -1.1317 -5.2734 19 8 3.1808 -0.8567 -6.3464 20 6 1.8422 -1.2771 -6.0935 21 6 0.9212 -1.1642 -7.3150 22 6 1.3531 -2.5971 -7.6715 23 6 1.6507 -2.7972 -6.1754 24 6 1.2527 -0.6579 -4.8269 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 0.7087 1.1612 3.4844 29 1 1.1494 0.5389 -2.5436 30 1 3.5621 0.6431 -4.1693 31 1 4.2789 -0.6527 -3.1813 32 1 4.1311 -2.2073 -5.1027 33 1 5.0786 -0.7627 -5.5315 34 1 -0.1347 -1.0769 -7.0594 35 1 1.2459 -0.4170 -8.0393 36 1 2.2407 -2.6412 -8.3027 37 1 0.5391 -3.2204 -8.0417 38 1 2.5621 -3.3633 -5.9831 39 1 0.7964 -3.1613 -5.6048 40 1 0.2759 -1.0978 -4.6261 41 1 1.1495 0.4189 -4.9610 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597409110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:46 Heat of formation + Delta-G solvation = -95.668402 kcal Electronic energy + Delta-G solvation = -21116.498497 eV Core-core repulsion = 17995.646324 eV Total energy + Delta-G solvation = -3120.852173 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.68443 -40.37396 -37.33867 -36.14466 -35.74332 -33.15210 -31.68902 -30.66797 -27.21221 -26.72440 -25.81547 -24.45575 -23.93591 -21.68083 -21.13836 -19.99285 -18.37931 -17.89220 -17.36944 -17.03015 -16.71556 -16.25416 -15.98095 -15.70396 -15.30168 -14.95368 -14.79011 -14.58245 -14.23476 -14.00293 -13.49480 -13.25661 -12.97561 -12.74896 -12.72176 -12.59089 -12.50804 -12.21342 -12.04267 -12.01239 -11.87264 -11.77056 -11.67622 -11.07586 -10.99245 -10.63928 -10.47230 -10.15658 -9.96153 -8.15620 -6.26112 1.40471 1.41835 1.50447 1.92472 2.31407 2.49906 2.66334 3.13899 3.47411 3.63236 3.78404 3.88925 3.89781 4.04291 4.05368 4.26740 4.36670 4.39144 4.53863 4.67233 4.74371 4.79243 4.82173 4.85003 4.91602 4.94228 4.98156 5.04500 5.05538 5.10070 5.19318 5.33972 5.42016 5.49409 5.61991 5.74849 5.94035 6.21284 6.27875 6.73723 6.86154 7.39448 7.54844 8.89969 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.039098 B = 0.004078 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.972352 B = 6864.717363 C = 7068.870578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.023 3.977 3 H 0.040 0.960 4 C -0.530 4.530 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.276 1.276 12 C 0.523 3.477 13 O -0.587 6.587 14 N -0.721 5.721 15 C 0.144 3.856 16 H 0.061 0.939 17 C -0.162 4.162 18 C 0.070 3.930 19 O -0.364 6.364 20 C 0.086 3.914 21 C -0.116 4.116 22 C -0.128 4.128 23 C -0.171 4.171 24 C -0.131 4.131 25 H 0.022 0.978 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.265 0.735 29 H 0.409 0.591 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.506 -1.415 -20.283 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.002 3.998 3 H 0.058 0.942 4 C -0.568 4.568 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.202 1.202 12 C 0.312 3.688 13 O -0.466 6.466 14 N -0.373 5.373 15 C 0.039 3.961 16 H 0.079 0.921 17 C -0.201 4.201 18 C -0.007 4.007 19 O -0.283 6.283 20 C 0.046 3.954 21 C -0.153 4.153 22 C -0.166 4.166 23 C -0.209 4.209 24 C -0.169 4.169 25 H 0.041 0.959 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.245 0.755 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.043 -1.908 -20.235 20.352 hybrid contribution 0.299 -0.184 1.546 1.586 sum -0.744 -2.092 -18.689 18.821 Atomic orbital electron populations 1.21545 0.94969 0.99375 1.01745 1.18819 0.95432 0.95870 0.89719 0.94228 1.21259 1.31648 1.12746 0.91185 0.93418 1.25591 0.95189 0.95748 1.01398 1.69944 1.37149 1.23561 1.24363 0.85662 0.78652 0.78750 0.78888 1.20227 1.19872 1.20170 1.21532 0.78078 0.83575 0.85610 1.90497 1.39913 1.28691 1.87513 1.46092 1.54209 1.32440 1.04602 1.20933 0.93808 0.96684 0.84696 0.92090 1.22527 0.97168 1.01877 0.98559 1.22547 0.93609 0.99046 0.85476 1.87870 1.17853 1.82166 1.40436 1.22399 0.83653 0.94269 0.95087 1.22987 0.99041 0.98000 0.95241 1.22760 1.01889 0.96735 0.95178 1.23564 1.02414 0.96194 0.98711 1.22305 0.98954 1.03133 0.92524 0.95903 0.91142 0.92865 0.92588 0.75469 0.90361 0.92744 0.93105 0.86837 0.87059 0.90257 0.90219 0.89812 0.92021 0.88877 0.89030 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 8.87 71.98 0.64 -4.73 16 2 C 0.02 1.15 2.64 -12.28 -0.03 1.12 16 3 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 4 C -0.53 -30.95 8.37 25.60 0.21 -30.73 16 5 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 6 C 0.02 1.12 5.30 84.65 0.45 1.57 16 7 N -0.91 -51.33 11.32 21.45 0.24 -51.08 16 8 Si 0.95 45.17 29.54 68.60 2.03 47.19 16 9 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 C 0.52 24.04 7.12 87.66 0.62 24.67 16 13 O -0.59 -31.40 15.12 -3.03 -0.05 -31.44 16 14 N -0.72 -24.43 4.98 -441.77 -2.20 -26.63 16 15 C 0.14 4.19 2.46 45.15 0.11 4.31 16 16 H 0.06 2.09 7.54 -2.39 -0.02 2.08 16 17 C -0.16 -4.51 5.67 30.66 0.17 -4.33 16 18 C 0.07 1.62 6.73 72.00 0.48 2.10 16 19 O -0.36 -8.42 10.45 -148.98 -1.56 -9.97 16 20 C 0.09 1.73 1.03 -10.58 -0.01 1.72 16 21 C -0.12 -1.74 7.47 31.02 0.23 -1.51 16 22 C -0.13 -1.94 8.02 31.17 0.25 -1.69 16 23 C -0.17 -3.25 7.11 31.03 0.22 -3.03 16 24 C -0.13 -2.79 4.74 30.64 0.15 -2.64 16 25 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 3.55 6.07 -2.39 -0.01 3.53 16 27 H 0.05 1.92 7.56 -2.39 -0.02 1.90 16 28 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.41 11.59 8.02 -92.70 -0.74 10.85 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 32 H 0.05 1.19 7.21 -2.39 -0.02 1.18 16 33 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.11 1.31 8.09 -2.39 -0.02 1.29 16 35 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.29 7.26 -2.39 -0.02 1.27 16 39 H 0.09 1.69 8.02 -2.39 -0.02 1.68 16 40 H 0.09 1.77 8.04 -2.39 -0.02 1.75 16 41 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -67.52 324.42 2.23 -65.28 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.27 Total: 19.85 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 3.50 Total: -13.20 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -1.96 Total: -77.71 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -1.60 Total: -41.42 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -67.52 2.23 -65.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597409110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.385 kcal (2) G-P(sol) polarization free energy of solvation -67.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds