Wall clock time and date at job start Mon Mar 30 2020 05:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47199 * 2 1 4 4 C 1.50704 * 109.47394 * 239.99489 * 2 1 3 5 5 H 1.07995 * 120.00380 * 274.89175 * 4 2 1 6 6 C 1.37883 * 119.99526 * 94.88995 * 4 2 1 7 7 N 1.31511 * 119.99513 * 184.58339 * 6 4 2 8 8 Si 1.86793 * 119.99977 * 4.58481 * 6 4 2 9 9 H 1.48507 * 109.47117 * 94.51051 * 8 6 4 10 10 H 1.48508 * 109.47102 * 214.50557 * 8 6 4 11 11 H 1.48500 * 109.47637 * 334.50855 * 8 6 4 12 12 C 1.50702 * 109.47056 * 119.99994 * 2 1 3 13 13 O 1.21279 * 120.00243 * 120.00388 * 12 2 1 14 14 N 1.34779 * 120.00018 * 299.99654 * 12 2 1 15 15 C 1.46498 * 120.00405 * 179.97438 * 14 12 2 16 16 C 1.52993 * 110.45744 * 176.31078 * 15 14 12 17 17 C 1.54515 * 110.50986 * 53.70238 * 15 14 12 18 18 C 1.54474 * 104.06570 * 241.35802 * 17 15 14 19 19 O 1.44423 * 104.80237 * 23.97742 * 18 17 15 20 20 C 1.44417 * 105.27859 * 319.48669 * 19 18 17 21 21 H 1.08996 * 110.37860 * 281.68226 * 20 19 18 22 22 C 1.53007 * 110.37419 * 159.34003 * 20 19 18 23 23 C 1.53001 * 117.49405 * 128.13991 * 22 20 19 24 24 C 1.53002 * 117.49478 * 59.48072 * 22 20 19 25 25 H 1.09003 * 109.47109 * 175.06668 * 1 2 3 26 26 H 1.08997 * 109.47434 * 295.06431 * 1 2 3 27 27 H 1.08997 * 109.47236 * 55.06905 * 1 2 3 28 28 H 0.97003 * 119.99760 * 180.02562 * 7 6 4 29 29 H 0.96997 * 119.99800 * 0.02562 * 14 12 2 30 30 H 1.08998 * 109.47558 * 60.70312 * 16 15 14 31 31 H 1.09009 * 109.47204 * 180.70362 * 16 15 14 32 32 H 1.08999 * 109.47274 * 300.69867 * 16 15 14 33 33 H 1.09001 * 110.50669 * 0.02562 * 17 15 14 34 34 H 1.08998 * 110.51078 * 122.57046 * 17 15 14 35 35 H 1.08996 * 110.37384 * 142.81136 * 18 17 15 36 36 H 1.08997 * 110.37075 * 265.03338 * 18 17 15 37 37 H 1.08999 * 115.55289 * 273.81186 * 22 20 19 38 38 H 1.08993 * 117.50211 * 0.02562 * 23 22 20 39 39 H 1.09006 * 117.49448 * 145.02728 * 23 22 20 40 40 H 1.08995 * 117.49695 * 214.97783 * 24 22 20 41 41 H 1.09002 * 117.49770 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1372 -1.7854 -1.2284 6 6 2.3581 0.0118 -2.3588 7 7 2.7102 -0.6135 -3.4609 8 14 2.2995 1.8785 -2.3221 9 1 3.6507 2.4101 -2.0106 10 1 1.8612 2.3861 -3.6471 11 1 1.3401 2.3232 -1.2795 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.1945 -0.9408 3.6508 16 6 1.7739 -0.1858 4.9133 17 6 3.7311 -1.0944 3.5985 18 6 3.9562 -2.6226 3.6091 19 8 2.7286 -3.1800 3.0913 20 6 1.6731 -2.3945 3.6868 21 1 1.4995 -2.7100 4.7156 22 6 0.3879 -2.5198 2.8660 23 6 -0.8912 -2.9067 3.6111 24 6 -0.2049 -3.9194 2.6910 25 1 -0.3633 -1.0239 -0.0884 26 1 -0.3634 0.4353 0.9308 27 1 -0.3633 0.5884 -0.8425 28 1 2.9397 -0.1054 -4.2546 29 1 1.1488 0.5385 2.5436 30 1 0.6861 -0.1383 4.9628 31 1 2.1553 -0.7062 5.7919 32 1 2.1807 0.8250 4.8847 33 1 4.1278 -0.6559 2.6828 34 1 4.1911 -0.6324 4.4720 35 1 4.7945 -2.8872 2.9647 36 1 4.1348 -2.9728 4.6257 37 1 0.2936 -1.8253 2.0313 38 1 -0.8172 -3.0715 4.6860 39 1 -1.8271 -2.4670 3.2662 40 1 -0.6895 -4.1455 1.7412 41 1 0.3210 -4.7509 3.1602 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597511308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:57 Heat of formation + Delta-G solvation = -48.163231 kcal Electronic energy + Delta-G solvation = -22308.761480 eV Core-core repulsion = 19189.969285 eV Total energy + Delta-G solvation = -3118.792194 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.49249 -37.74873 -36.34789 -34.50160 -33.54470 -31.62286 -30.40715 -29.21146 -26.47373 -25.22052 -23.18506 -22.60429 -22.07780 -20.62622 -19.70790 -19.01303 -16.97769 -16.47171 -16.05546 -15.44983 -15.35001 -14.56005 -14.34773 -14.13353 -13.63123 -13.37799 -13.28911 -12.80586 -12.49394 -12.43279 -12.12958 -11.99184 -11.37372 -11.35633 -11.25768 -11.23600 -11.07371 -10.90855 -10.75131 -10.61610 -10.17905 -9.97957 -9.78179 -9.74885 -9.37254 -9.10038 -8.55346 -8.35196 -8.27161 -6.02322 -4.00616 3.25233 3.31678 3.35157 3.74424 3.81732 3.85668 4.41127 4.47689 4.71482 4.74752 4.97886 5.14659 5.23513 5.27734 5.33576 5.37103 5.42514 5.59548 5.63136 5.70335 5.76627 5.88576 5.91708 6.00945 6.11432 6.15853 6.16627 6.19051 6.32272 6.41093 6.42787 6.53845 6.64321 6.87773 7.13620 7.22021 7.32789 7.61763 8.27017 8.61556 9.15776 9.35196 9.58285 11.11114 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022005 B = 0.006917 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.148137 B = 4047.141063 C = 4265.939358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.008 4.008 3 H 0.053 0.947 4 C -0.489 4.489 5 H 0.086 0.914 6 C 0.070 3.930 7 N -0.896 5.896 8 Si 0.869 3.131 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.263 1.263 12 C 0.508 3.492 13 O -0.492 6.492 14 N -0.740 5.740 15 C 0.148 3.852 16 C -0.146 4.146 17 C -0.155 4.155 18 C 0.058 3.942 19 O -0.336 6.336 20 C 0.104 3.896 21 H 0.062 0.938 22 C -0.141 4.141 23 C -0.183 4.183 24 C -0.165 4.165 25 H 0.050 0.950 26 H 0.025 0.975 27 H 0.052 0.948 28 H 0.263 0.737 29 H 0.392 0.608 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.123 0.877 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 1.616 18.253 18.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.030 4.030 3 H 0.071 0.929 4 C -0.527 4.527 5 H 0.104 0.896 6 C -0.132 4.132 7 N -0.534 5.534 8 Si 0.697 3.303 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.188 1.188 12 C 0.296 3.704 13 O -0.362 6.362 14 N -0.396 5.396 15 C 0.060 3.940 16 C -0.204 4.204 17 C -0.194 4.194 18 C -0.020 4.020 19 O -0.254 6.254 20 C 0.044 3.956 21 H 0.080 0.920 22 C -0.159 4.159 23 C -0.220 4.220 24 C -0.202 4.202 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.225 0.775 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.140 0.860 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.653 0.704 17.770 18.155 hybrid contribution -0.142 1.668 0.042 1.674 sum -3.795 2.372 17.812 18.365 Atomic orbital electron populations 1.21968 0.97207 1.01130 0.98876 1.19421 0.93791 0.97121 0.92634 0.92869 1.20763 1.42474 0.96225 0.93239 0.89552 1.25036 0.94884 0.97804 0.95440 1.69896 1.46328 1.35471 1.01713 0.86974 0.78677 0.87112 0.77567 1.20443 1.21253 1.18756 1.21650 0.80061 0.84999 0.83694 1.90696 1.35114 1.24444 1.85980 1.46486 1.55736 1.32293 1.05050 1.21485 0.93442 0.92743 0.86307 1.21954 1.02102 1.00511 0.95785 1.23268 0.95298 0.97840 1.03005 1.23103 0.89481 0.91936 0.97456 1.89300 1.13587 1.54028 1.68489 1.22690 0.88309 0.89951 0.94600 0.92034 1.22384 0.91220 1.00050 1.02269 1.22974 0.96286 1.04907 0.97818 1.22763 1.03292 0.93189 1.00985 0.93048 0.95592 0.92929 0.92697 0.77470 0.91648 0.91314 0.91691 0.89524 0.91207 0.89421 0.93734 0.85965 0.89362 0.88883 0.88869 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 8.61 37.16 0.32 -2.33 16 2 C -0.01 -0.18 2.27 -92.92 -0.21 -0.39 16 3 H 0.05 1.20 5.09 -51.93 -0.26 0.94 16 4 C -0.49 -14.01 8.36 -34.44 -0.29 -14.29 16 5 H 0.09 2.84 7.61 -52.49 -0.40 2.44 16 6 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 7 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 8 Si 0.87 21.01 27.29 -169.99 -4.64 16.37 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.26 -5.82 6.39 56.52 0.36 -5.45 16 12 C 0.51 10.84 4.41 -10.98 -0.05 10.79 16 13 O -0.49 -12.28 11.49 -16.83 -0.19 -12.47 16 14 N -0.74 -11.90 3.95 -46.15 -0.18 -12.08 16 15 C 0.15 2.09 1.08 -130.25 -0.14 1.94 16 16 C -0.15 -1.44 8.42 37.15 0.31 -1.12 16 17 C -0.16 -2.29 5.73 -25.16 -0.14 -2.44 16 18 C 0.06 0.89 7.27 37.93 0.28 1.17 16 19 O -0.34 -6.32 9.37 -57.62 -0.54 -6.86 16 20 C 0.10 1.60 2.68 -25.95 -0.07 1.53 16 21 H 0.06 0.82 7.67 -51.93 -0.40 0.42 16 22 C -0.14 -2.25 4.72 -90.61 -0.43 -2.68 16 23 C -0.18 -2.29 10.19 -26.69 -0.27 -2.57 16 24 C -0.17 -2.49 10.18 -26.69 -0.27 -2.77 16 25 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 26 H 0.03 0.41 7.43 -51.93 -0.39 0.02 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.39 5.31 7.88 -40.82 -0.32 4.98 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 1.55 6.79 -51.93 -0.35 1.20 16 34 H 0.07 0.81 7.73 -51.93 -0.40 0.41 16 35 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.12 2.23 4.60 -51.93 -0.24 1.99 16 38 H 0.09 0.95 8.06 -51.93 -0.42 0.54 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 41 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 318.54 15.07 4.80 4.80 Total: -1.00 -33.49 318.54 -7.62 -41.11 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -6.58 Total: 7.41 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.06 Total: -11.23 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.59 Total: -39.13 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.73 Total: -19.33 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.64 Total: 16.37 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.49 -7.62 -41.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597511308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.050 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds