Wall clock time and date at job start Mon Mar 30 2020 05:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47199 * 2 1 4 4 C 1.50704 * 109.47394 * 239.99489 * 2 1 3 5 5 H 1.07995 * 120.00380 * 274.89175 * 4 2 1 6 6 C 1.37883 * 119.99526 * 94.88995 * 4 2 1 7 7 N 1.31511 * 119.99513 * 184.58339 * 6 4 2 8 8 Si 1.86793 * 119.99977 * 4.58481 * 6 4 2 9 9 H 1.48507 * 109.47117 * 94.51051 * 8 6 4 10 10 H 1.48508 * 109.47102 * 214.50557 * 8 6 4 11 11 H 1.48500 * 109.47637 * 334.50855 * 8 6 4 12 12 C 1.50702 * 109.47056 * 119.99994 * 2 1 3 13 13 O 1.21279 * 120.00243 * 120.00388 * 12 2 1 14 14 N 1.34779 * 120.00018 * 299.99654 * 12 2 1 15 15 C 1.46498 * 120.00405 * 179.97438 * 14 12 2 16 16 C 1.52993 * 110.45744 * 176.31078 * 15 14 12 17 17 C 1.54515 * 110.50986 * 53.70238 * 15 14 12 18 18 C 1.54474 * 104.06570 * 241.35802 * 17 15 14 19 19 O 1.44423 * 104.80237 * 23.97742 * 18 17 15 20 20 C 1.44417 * 105.27859 * 319.48669 * 19 18 17 21 21 H 1.08996 * 110.37860 * 281.68226 * 20 19 18 22 22 C 1.53007 * 110.37419 * 159.34003 * 20 19 18 23 23 C 1.53001 * 117.49405 * 128.13991 * 22 20 19 24 24 C 1.53002 * 117.49478 * 59.48072 * 22 20 19 25 25 H 1.09003 * 109.47109 * 175.06668 * 1 2 3 26 26 H 1.08997 * 109.47434 * 295.06431 * 1 2 3 27 27 H 1.08997 * 109.47236 * 55.06905 * 1 2 3 28 28 H 0.97003 * 119.99760 * 180.02562 * 7 6 4 29 29 H 0.96997 * 119.99800 * 0.02562 * 14 12 2 30 30 H 1.08998 * 109.47558 * 60.70312 * 16 15 14 31 31 H 1.09009 * 109.47204 * 180.70362 * 16 15 14 32 32 H 1.08999 * 109.47274 * 300.69867 * 16 15 14 33 33 H 1.09001 * 110.50669 * 0.02562 * 17 15 14 34 34 H 1.08998 * 110.51078 * 122.57046 * 17 15 14 35 35 H 1.08996 * 110.37384 * 142.81136 * 18 17 15 36 36 H 1.08997 * 110.37075 * 265.03338 * 18 17 15 37 37 H 1.08999 * 115.55289 * 273.81186 * 22 20 19 38 38 H 1.08993 * 117.50211 * 0.02562 * 23 22 20 39 39 H 1.09006 * 117.49448 * 145.02728 * 23 22 20 40 40 H 1.08995 * 117.49695 * 214.97783 * 24 22 20 41 41 H 1.09002 * 117.49770 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1372 -1.7854 -1.2284 6 6 2.3581 0.0118 -2.3588 7 7 2.7102 -0.6135 -3.4609 8 14 2.2995 1.8785 -2.3221 9 1 3.6507 2.4101 -2.0106 10 1 1.8612 2.3861 -3.6471 11 1 1.3401 2.3232 -1.2795 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.1945 -0.9408 3.6508 16 6 1.7739 -0.1858 4.9133 17 6 3.7311 -1.0944 3.5985 18 6 3.9562 -2.6226 3.6091 19 8 2.7286 -3.1800 3.0913 20 6 1.6731 -2.3945 3.6868 21 1 1.4995 -2.7100 4.7156 22 6 0.3879 -2.5198 2.8660 23 6 -0.8912 -2.9067 3.6111 24 6 -0.2049 -3.9194 2.6910 25 1 -0.3633 -1.0239 -0.0884 26 1 -0.3634 0.4353 0.9308 27 1 -0.3633 0.5884 -0.8425 28 1 2.9397 -0.1054 -4.2546 29 1 1.1488 0.5385 2.5436 30 1 0.6861 -0.1383 4.9628 31 1 2.1553 -0.7062 5.7919 32 1 2.1807 0.8250 4.8847 33 1 4.1278 -0.6559 2.6828 34 1 4.1911 -0.6324 4.4720 35 1 4.7945 -2.8872 2.9647 36 1 4.1348 -2.9728 4.6257 37 1 0.2936 -1.8253 2.0313 38 1 -0.8172 -3.0715 4.6860 39 1 -1.8271 -2.4670 3.2662 40 1 -0.6895 -4.1455 1.7412 41 1 0.3210 -4.7509 3.1602 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597511308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:57 Heat of formation + Delta-G solvation = -71.540316 kcal Electronic energy + Delta-G solvation = -22309.775186 eV Core-core repulsion = 19189.969285 eV Total energy + Delta-G solvation = -3119.805901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.79474 -39.29110 -37.48583 -35.85008 -35.51422 -33.51062 -31.87410 -30.32652 -27.47367 -27.22121 -24.71412 -23.97033 -23.15237 -21.83959 -21.13330 -20.46748 -19.07097 -17.88469 -17.41537 -16.83619 -16.64404 -16.15296 -15.82139 -15.48550 -15.04176 -14.94334 -14.54563 -14.43333 -14.00004 -13.78162 -13.24708 -13.14251 -12.97564 -12.89145 -12.61788 -12.48730 -12.38142 -12.31112 -12.13151 -11.96118 -11.72019 -11.71452 -11.20136 -11.12791 -10.92195 -10.73565 -10.60927 -10.07292 -9.65638 -8.25846 -6.31099 1.33491 1.36591 1.47411 2.12476 2.35256 2.47011 2.70632 3.11725 3.36928 3.60970 3.67248 3.93565 4.08982 4.16669 4.19013 4.28227 4.33923 4.43853 4.45616 4.52587 4.75257 4.76065 4.78380 4.78847 4.84470 4.86986 4.95662 5.01274 5.05281 5.15272 5.23360 5.25492 5.30305 5.38300 5.53494 5.61414 5.85230 6.16939 6.29699 6.73778 7.00073 7.30342 7.79424 8.92653 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022005 B = 0.006917 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.148137 B = 4047.141063 C = 4265.939358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.013 4.013 3 H 0.068 0.932 4 C -0.496 4.496 5 H 0.018 0.982 6 C 0.000 4.000 7 N -0.956 5.956 8 Si 0.947 3.053 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.219 1.219 12 C 0.512 3.488 13 O -0.540 6.540 14 N -0.718 5.718 15 C 0.145 3.855 16 C -0.137 4.137 17 C -0.153 4.153 18 C 0.051 3.949 19 O -0.382 6.382 20 C 0.100 3.900 21 H 0.092 0.908 22 C -0.167 4.167 23 C -0.138 4.138 24 C -0.190 4.190 25 H 0.031 0.969 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.265 0.735 29 H 0.408 0.592 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.968 4.771 22.309 23.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.035 4.035 3 H 0.086 0.914 4 C -0.535 4.535 5 H 0.036 0.964 6 C -0.195 4.195 7 N -0.596 5.596 8 Si 0.769 3.231 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.142 1.142 12 C 0.299 3.701 13 O -0.415 6.415 14 N -0.374 5.374 15 C 0.058 3.942 16 C -0.195 4.195 17 C -0.192 4.192 18 C -0.026 4.026 19 O -0.301 6.301 20 C 0.041 3.959 21 H 0.109 0.891 22 C -0.186 4.186 23 C -0.175 4.175 24 C -0.227 4.227 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.245 0.755 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.135 0.865 39 H 0.125 0.875 40 H 0.095 0.905 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.432 3.888 21.893 22.890 hybrid contribution 0.424 0.512 -1.225 1.394 sum -5.008 4.400 20.668 21.717 Atomic orbital electron populations 1.21813 0.94370 1.00582 1.01514 1.19398 0.95899 0.97010 0.91193 0.91421 1.20875 1.42737 0.93573 0.96294 0.96390 1.26113 0.94294 1.04605 0.94501 1.70101 1.48407 1.38231 1.02862 0.85745 0.79768 0.78668 0.78891 1.20066 1.20997 1.14186 1.21201 0.79553 0.84285 0.85040 1.90697 1.37401 1.26551 1.86845 1.46113 1.54757 1.32326 1.04167 1.21794 0.92716 0.92728 0.86994 1.21963 1.03297 1.00710 0.93509 1.23268 0.96177 0.97102 1.02645 1.23245 0.87969 0.92772 0.98571 1.89259 1.15400 1.55473 1.69976 1.22950 0.87120 0.90336 0.95471 0.89061 1.22390 0.93576 0.99625 1.02984 1.23068 0.94859 1.00859 0.98669 1.22762 1.04849 0.93500 1.01637 0.94936 0.90599 0.92861 0.92623 0.75497 0.90099 0.89005 0.90302 0.93615 0.87279 0.92002 0.90026 0.88712 0.86463 0.87468 0.90536 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.75 8.61 71.98 0.62 -4.13 16 2 C -0.01 -0.60 2.27 -12.29 -0.03 -0.63 16 3 H 0.07 2.90 5.09 -2.39 -0.01 2.88 16 4 C -0.50 -30.04 8.36 25.60 0.21 -29.82 16 5 H 0.02 1.29 7.61 -2.91 -0.02 1.26 16 6 C 0.00 0.03 5.47 84.66 0.46 0.49 16 7 N -0.96 -62.70 13.96 21.45 0.30 -62.40 16 8 Si 0.95 43.30 27.29 68.60 1.87 45.17 16 9 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.22 -8.44 6.39 99.48 0.64 -7.80 16 12 C 0.51 22.05 4.41 87.66 0.39 22.43 16 13 O -0.54 -28.59 11.49 18.38 0.21 -28.38 16 14 N -0.72 -21.48 3.95 -418.32 -1.65 -23.13 16 15 C 0.14 3.64 1.08 4.62 0.01 3.65 16 16 C -0.14 -1.91 8.42 71.98 0.61 -1.30 16 17 C -0.15 -4.28 5.73 31.61 0.18 -4.10 16 18 C 0.05 1.58 7.27 72.48 0.53 2.11 16 19 O -0.38 -14.61 9.37 -127.57 -1.20 -15.80 16 20 C 0.10 2.87 2.68 31.10 0.08 2.95 16 21 H 0.09 2.05 7.67 -2.39 -0.02 2.03 16 22 C -0.17 -5.14 4.72 -10.79 -0.05 -5.19 16 23 C -0.14 -3.00 10.19 30.62 0.31 -2.69 16 24 C -0.19 -5.76 10.18 30.62 0.31 -5.44 16 25 H 0.03 1.33 8.04 -2.39 -0.02 1.31 16 26 H 0.08 2.11 7.43 -2.39 -0.02 2.10 16 27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 29 H 0.41 9.37 7.88 -92.71 -0.73 8.64 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.04 1.65 6.79 -2.39 -0.02 1.64 16 34 H 0.11 2.12 7.73 -2.39 -0.02 2.10 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.09 3.43 4.60 -2.39 -0.01 3.42 16 38 H 0.12 1.91 8.06 -2.39 -0.02 1.89 16 39 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -82.76 318.54 3.39 -79.37 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.22 Total: 26.86 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 3.63 Total: -21.68 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -1.35 Total: -85.53 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -0.98 Total: -44.18 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.87 Total: 45.17 kcal Total: -82.76 3.39 -79.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597511308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.832 kcal (2) G-P(sol) polarization free energy of solvation -82.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds