Wall clock time and date at job start Mon Mar 30 2020 05:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47445 * 2 1 4 4 C 1.50699 * 109.47644 * 239.99582 * 2 1 3 5 5 H 1.07997 * 120.00180 * 240.00199 * 4 2 1 6 6 C 1.37877 * 119.99776 * 59.99780 * 4 2 1 7 7 N 1.31521 * 120.00136 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00048 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47050 * 60.00463 * 8 6 4 10 10 H 1.48500 * 109.47200 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47055 * 300.00212 * 8 6 4 12 12 C 1.50707 * 109.46902 * 119.99866 * 2 1 3 13 13 O 1.21277 * 120.00173 * 120.00457 * 12 2 1 14 14 N 1.34779 * 119.99639 * 300.00209 * 12 2 1 15 15 C 1.46500 * 119.99855 * 180.02562 * 14 12 2 16 16 H 1.09003 * 109.54426 * 34.81504 * 15 14 12 17 17 C 1.53177 * 109.60335 * 274.60481 * 15 14 12 18 18 C 1.53092 * 109.16443 * 297.04947 * 17 15 14 19 19 O 1.42905 * 109.42428 * 302.41109 * 18 17 15 20 20 C 1.42901 * 114.09770 * 61.14988 * 19 18 17 21 21 H 1.09002 * 109.48282 * 58.82206 * 20 19 18 22 22 C 1.53001 * 109.48386 * 178.85956 * 20 19 18 23 23 C 1.53002 * 117.49522 * 8.62063 * 22 20 19 24 24 C 1.53000 * 60.00114 * 252.51472 * 23 22 20 25 25 C 1.53095 * 109.41489 * 298.84274 * 20 19 18 26 26 H 1.08999 * 109.47072 * 60.00522 * 1 2 3 27 27 H 1.09003 * 109.47084 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47846 * 300.00235 * 1 2 3 29 29 H 0.97000 * 120.00036 * 179.97438 * 7 6 4 30 30 H 0.96993 * 120.00344 * 359.97438 * 14 12 2 31 31 H 1.09004 * 109.51365 * 177.15263 * 17 15 14 32 32 H 1.08998 * 109.53811 * 56.96708 * 17 15 14 33 33 H 1.09002 * 109.48343 * 182.42096 * 18 17 15 34 34 H 1.08999 * 109.47546 * 62.39689 * 18 17 15 35 35 H 1.08999 * 115.55136 * 154.33049 * 22 20 19 36 36 H 1.09003 * 117.49779 * 0.02562 * 23 22 20 37 37 H 1.09003 * 117.49586 * 145.02146 * 23 22 20 38 38 H 1.09004 * 117.49631 * 252.51702 * 24 23 22 39 39 H 1.08994 * 117.52375 * 107.48275 * 24 23 22 40 40 H 1.09001 * 109.52141 * 177.51212 * 25 20 19 41 41 H 1.09003 * 109.52166 * 297.70284 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3215 -1.1205 -4.0078 9 1 1.8260 -2.5204 -4.0076 10 1 1.8271 -0.4202 -5.2204 11 1 3.8065 -1.1210 -4.0079 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6964 1.1194 14 7 1.7065 -0.2499 2.4546 15 6 2.1953 -0.9401 3.6508 16 1 3.1934 -1.3352 3.4617 17 6 1.2473 -2.0904 4.0038 18 6 -0.1314 -1.5188 4.3447 19 8 -0.0072 -0.5894 5.4231 20 6 0.8298 0.5321 5.1333 21 1 0.4341 1.0677 4.2704 22 6 0.8655 1.4683 6.3430 23 6 0.2200 0.9731 7.6387 24 6 -0.4623 2.0657 6.8132 25 6 2.2472 0.0429 4.8244 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.7095 1.1616 -3.4845 30 1 1.1492 0.5389 2.5436 31 1 1.6389 -2.6341 4.8636 32 1 1.1613 -2.7660 3.1529 33 1 -0.7985 -2.3293 4.6384 34 1 -0.5399 -1.0100 3.4716 35 1 1.7562 2.0905 6.4298 36 1 -0.2297 -0.0199 7.6295 37 1 0.6862 1.2694 8.5784 38 1 -0.4450 3.0809 7.2097 39 1 -1.3611 1.7922 6.2605 40 1 2.8764 0.8928 4.5601 41 1 2.6589 -0.4577 5.7009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597515605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:53 Heat of formation + Delta-G solvation = -72.526138 kcal Electronic energy + Delta-G solvation = -21218.470528 eV Core-core repulsion = 18098.621879 eV Total energy + Delta-G solvation = -3119.848649 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.21094 -38.44176 -36.62136 -34.63235 -33.72128 -31.40931 -30.92858 -29.87410 -25.44794 -25.11389 -23.72403 -22.81792 -22.40206 -20.74092 -20.00804 -18.91118 -16.70637 -16.34028 -16.10231 -15.92691 -15.31806 -15.19000 -14.63449 -14.53767 -14.26135 -13.54733 -13.10495 -12.91695 -12.74814 -12.30785 -12.09256 -11.97733 -11.57397 -11.50932 -11.37297 -11.00988 -10.93978 -10.74662 -10.70425 -10.60291 -10.36983 -10.26081 -10.09586 -9.94152 -9.33609 -8.98802 -8.60198 -8.46567 -8.31005 -6.02845 -4.06029 3.36276 3.38719 3.44091 3.55960 3.72345 3.80328 3.90723 4.45093 4.48197 4.74959 4.86187 4.89725 4.97642 5.10775 5.21585 5.25048 5.30480 5.38249 5.53085 5.57749 5.61116 5.78659 5.87027 5.96109 5.99288 6.06820 6.07634 6.17068 6.22366 6.34763 6.60512 6.81339 6.92108 7.10269 7.22772 7.47119 7.75184 7.98964 8.14681 8.44766 9.02684 9.24543 9.59585 11.04718 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.035157 B = 0.004353 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.236645 B = 6430.398227 C = 6732.219996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.501 4.501 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.520 3.480 13 O -0.545 6.545 14 N -0.743 5.743 15 C 0.142 3.858 16 H 0.087 0.913 17 C -0.164 4.164 18 C 0.064 3.936 19 O -0.378 6.378 20 C 0.120 3.880 21 H 0.062 0.938 22 C -0.154 4.154 23 C -0.165 4.165 24 C -0.176 4.176 25 C -0.151 4.151 26 H 0.093 0.907 27 H 0.030 0.970 28 H 0.010 0.990 29 H 0.261 0.739 30 H 0.393 0.607 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.677 1.866 17.925 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.539 4.539 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.310 3.690 13 O -0.421 6.421 14 N -0.398 5.398 15 C 0.037 3.963 16 H 0.105 0.895 17 C -0.203 4.203 18 C -0.013 4.013 19 O -0.298 6.298 20 C 0.062 3.938 21 H 0.080 0.920 22 C -0.172 4.172 23 C -0.202 4.202 24 C -0.213 4.213 25 C -0.189 4.189 26 H 0.111 0.889 27 H 0.050 0.950 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.227 0.773 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.324 1.225 17.853 18.045 hybrid contribution 0.194 -0.012 -1.063 1.080 sum -2.130 1.213 16.790 16.968 Atomic orbital electron populations 1.21729 0.96601 0.99727 1.00829 1.18868 0.94086 0.96825 0.89457 0.93101 1.21102 1.30999 1.12813 0.89022 0.90868 1.24950 0.95117 0.95067 0.99096 1.69863 1.37106 1.23067 1.23615 0.86511 0.79276 0.79713 0.81656 1.20216 1.21384 1.20212 1.21976 0.78250 0.84244 0.84499 1.90523 1.37935 1.26897 1.86750 1.46445 1.55447 1.32390 1.05513 1.20798 0.98651 0.92085 0.84778 0.89454 1.22539 0.96539 0.98921 1.02346 1.22536 0.96592 0.92143 0.90004 1.87858 1.68293 1.34341 1.39292 1.21441 0.90056 0.86589 0.95694 0.92050 1.22311 0.97596 1.01798 0.95492 1.22838 1.03691 0.99872 0.93775 1.22934 0.96173 0.97961 1.04209 1.22428 0.97624 1.00264 0.98626 0.88853 0.95045 0.97114 0.92926 0.77294 0.90843 0.90127 0.89107 0.92693 0.86791 0.87653 0.89376 0.89043 0.88604 0.90286 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.87 37.16 0.33 -2.65 16 2 C 0.03 0.71 2.64 -92.92 -0.25 0.47 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 4 C -0.50 -14.20 8.37 -34.44 -0.29 -14.49 16 5 H 0.07 2.19 6.75 -52.49 -0.35 1.84 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.15 11.32 55.43 0.63 -24.52 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 C 0.52 11.66 7.12 -10.98 -0.08 11.58 16 13 O -0.55 -14.00 15.12 5.56 0.08 -13.92 16 14 N -0.74 -12.61 4.30 -53.63 -0.23 -12.84 16 15 C 0.14 2.08 2.81 -67.75 -0.19 1.89 16 16 H 0.09 1.44 7.58 -51.93 -0.39 1.04 16 17 C -0.16 -2.26 5.81 -26.59 -0.15 -2.42 16 18 C 0.06 0.81 6.68 37.20 0.25 1.05 16 19 O -0.38 -4.71 8.76 -35.23 -0.31 -5.02 16 20 C 0.12 1.36 2.82 -26.68 -0.08 1.29 16 21 H 0.06 0.73 6.72 -51.93 -0.35 0.38 16 22 C -0.15 -1.51 5.71 -90.62 -0.52 -2.02 16 23 C -0.16 -1.55 9.87 -26.73 -0.26 -1.81 16 24 C -0.18 -1.63 10.19 -26.73 -0.27 -1.90 16 25 C -0.15 -1.74 5.06 -26.59 -0.13 -1.87 16 26 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.01 0.19 7.56 -51.93 -0.39 -0.20 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.39 5.97 6.49 -40.82 -0.27 5.71 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.75 7.75 -51.93 -0.40 0.35 16 35 H 0.11 0.98 8.11 -51.93 -0.42 0.56 16 36 H 0.11 1.11 7.06 -51.93 -0.37 0.74 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 325.45 15.07 4.90 4.90 Total: -1.00 -30.40 325.45 -8.30 -38.70 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.62 Total: 5.22 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -1.74 Total: -9.36 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.40 Total: -37.37 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.22 Total: -18.94 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.40 -8.30 -38.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597515605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.825 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds