Wall clock time and date at job start Mon Mar 30 2020 05:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99426 * 2 1 4 4 C 1.50697 * 120.00270 * 179.97438 * 2 1 3 5 5 H 1.08991 * 110.33136 * 133.73488 * 4 2 1 6 6 O 1.44429 * 110.37030 * 11.48869 * 4 2 1 7 7 C 1.44428 * 105.27464 * 200.65663 * 6 4 2 8 8 C 1.54480 * 104.80017 * 40.51031 * 7 6 4 9 9 C 1.54480 * 110.37386 * 256.10947 * 4 2 1 10 10 H 1.09001 * 110.50699 * 261.45270 * 9 4 2 11 11 C 1.53000 * 110.51259 * 24.16243 * 9 4 2 12 12 N 1.46499 * 109.47144 * 182.65882 * 11 9 4 13 13 C 1.34775 * 119.99869 * 179.97438 * 12 11 9 14 14 O 1.21284 * 120.00099 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.00074 * 180.02562 * 13 12 11 16 16 H 1.09005 * 109.46727 * 300.00554 * 15 13 12 17 17 C 1.52998 * 109.47029 * 60.00080 * 15 13 12 18 18 C 1.50699 * 109.47094 * 180.02562 * 15 13 12 19 19 H 1.07997 * 120.00105 * 0.02562 * 18 15 13 20 20 C 1.37876 * 119.99689 * 179.97438 * 18 15 13 21 21 N 1.31517 * 119.99804 * 179.97438 * 20 18 15 22 22 Si 1.86798 * 120.00318 * 0.02562 * 20 18 15 23 23 H 1.48493 * 109.47516 * 89.99360 * 22 20 18 24 24 H 1.48499 * 109.47252 * 209.99982 * 22 20 18 25 25 H 1.48509 * 109.46907 * 329.99506 * 22 20 18 26 26 H 1.08005 * 119.99678 * 179.97438 * 1 2 3 27 27 H 1.07989 * 120.00259 * 359.72925 * 1 2 3 28 28 H 1.08997 * 109.47498 * 355.06147 * 3 2 1 29 29 H 1.09007 * 109.46646 * 115.06370 * 3 2 1 30 30 H 1.09005 * 109.46786 * 235.05798 * 3 2 1 31 31 H 1.08997 * 110.37273 * 159.34024 * 7 6 4 32 32 H 1.09003 * 110.37152 * 281.68656 * 7 6 4 33 33 H 1.08999 * 110.51025 * 94.67105 * 8 7 6 34 34 H 1.09010 * 110.50931 * 217.23694 * 8 7 6 35 35 H 1.09004 * 109.47256 * 302.66415 * 11 9 4 36 36 H 1.08997 * 109.46916 * 62.65927 * 11 9 4 37 37 H 0.96996 * 120.00040 * 0.02562 * 12 11 9 38 38 H 1.09004 * 109.46626 * 60.00222 * 17 15 13 39 39 H 1.08996 * 109.47208 * 179.97438 * 17 15 13 40 40 H 1.08998 * 109.47120 * 300.00447 * 17 15 13 41 41 H 0.97007 * 119.99710 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 0.0006 5 1 2.8648 -1.2800 -0.7379 6 8 1.1659 -2.4040 -0.2686 7 6 1.8409 -3.5782 0.2329 8 6 2.4838 -3.1261 1.5628 9 6 2.6336 -1.5963 1.4065 10 1 3.6834 -1.3079 1.4602 11 6 1.8201 -0.8658 2.4768 12 7 2.4172 -1.1061 3.7928 13 6 1.8657 -0.5574 4.8933 14 8 0.8748 0.1349 4.7943 15 6 2.4802 -0.8041 6.2471 16 1 2.4790 -1.8738 6.4571 17 6 3.9191 -0.2842 6.2563 18 6 1.6788 -0.0847 7.3012 19 1 0.8110 0.4930 7.0192 20 6 2.0529 -0.1649 8.6258 21 7 1.3538 0.4633 9.5457 22 14 3.5535 -1.1647 9.1138 23 1 4.7579 -0.2967 9.0837 24 1 3.3652 -1.7030 10.4849 25 1 3.7301 -2.2896 8.1604 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5400 0.9352 0.0044 28 1 1.3584 2.1317 -0.0885 29 1 2.6221 1.4021 0.9310 30 1 2.7548 1.3256 -0.8425 31 1 1.1249 -4.3805 0.4110 32 1 2.6093 -3.9030 -0.4688 33 1 1.8301 -3.3620 2.4026 34 1 3.4585 -3.5959 1.6951 35 1 1.8212 0.2039 2.2670 36 1 0.7950 -1.2362 2.4698 37 1 3.2099 -1.6595 3.8720 38 1 3.9203 0.7854 6.0462 39 1 4.3635 -0.4622 7.2356 40 1 4.4985 -0.8049 5.4939 41 1 1.6173 0.4072 10.4777 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597610080.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:15 Heat of formation + Delta-G solvation = -66.811021 kcal Electronic energy + Delta-G solvation = -21024.147979 eV Core-core repulsion = 17904.547156 eV Total energy + Delta-G solvation = -3119.600823 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.31377 -38.70004 -35.39092 -34.59323 -33.79076 -31.95724 -31.01034 -29.01017 -27.26092 -25.90049 -25.12127 -23.07475 -22.46945 -20.73617 -19.43038 -18.49215 -16.90068 -16.64640 -16.29020 -15.76784 -15.44381 -15.24869 -14.76997 -14.36206 -14.00968 -13.80006 -13.22898 -13.16019 -13.00665 -12.79396 -12.46398 -12.27713 -12.11409 -11.77519 -11.54814 -11.42955 -11.20408 -11.18773 -10.90323 -10.69557 -10.55635 -10.28835 -10.04571 -9.62809 -9.08105 -9.05367 -8.66165 -8.56876 -8.47428 -6.03414 -4.03351 2.17641 3.23557 3.30756 3.36758 3.58092 3.63685 3.82658 4.31174 4.38855 4.49654 4.71229 4.86461 4.93367 5.02580 5.15870 5.25711 5.28951 5.36967 5.45716 5.51537 5.54189 5.63293 5.77772 5.83249 5.89080 5.96910 6.04612 6.11361 6.17165 6.34767 6.46163 6.46611 6.61027 6.73636 6.90458 7.00629 7.17686 7.56923 8.16303 8.58039 9.12811 9.19272 9.55807 11.09679 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028638 B = 0.004592 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.492267 B = 6096.090494 C = 6521.965189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.141 4.141 3 C -0.116 4.116 4 C 0.122 3.878 5 H 0.077 0.923 6 O -0.367 6.367 7 C 0.046 3.954 8 C -0.155 4.155 9 C -0.124 4.124 10 H 0.090 0.910 11 C 0.131 3.869 12 N -0.749 5.749 13 C 0.527 3.473 14 O -0.530 6.530 15 C -0.005 4.005 16 H 0.051 0.949 17 C -0.143 4.143 18 C -0.504 4.504 19 H 0.093 0.907 20 C 0.069 3.931 21 N -0.897 5.897 22 Si 0.885 3.115 23 H -0.279 1.279 24 H -0.296 1.296 25 H -0.268 1.268 26 H 0.107 0.893 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.392 0.608 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.032 0.968 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.470 -6.536 -20.389 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 C -0.172 4.172 4 C 0.064 3.936 5 H 0.095 0.905 6 O -0.286 6.286 7 C -0.031 4.031 8 C -0.193 4.193 9 C -0.143 4.143 10 H 0.109 0.891 11 C 0.007 3.993 12 N -0.404 5.404 13 C 0.315 3.685 14 O -0.404 6.404 15 C -0.027 4.027 16 H 0.068 0.932 17 C -0.201 4.201 18 C -0.543 4.543 19 H 0.111 0.889 20 C -0.132 4.132 21 N -0.535 5.535 22 Si 0.715 3.285 23 H -0.206 1.206 24 H -0.223 1.223 25 H -0.193 1.193 26 H 0.125 0.875 27 H 0.117 0.883 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.226 0.774 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.478 -5.954 -20.354 21.903 hybrid contribution 1.485 -0.861 0.561 1.806 sum 6.962 -6.815 -19.794 22.061 Atomic orbital electron populations 1.23783 0.95310 1.02343 0.98538 1.21393 0.95761 0.93917 1.02996 1.20859 1.00342 0.93823 1.02224 1.21711 0.91173 0.86133 0.94599 0.90494 1.89131 1.41807 1.15926 1.81698 1.23387 0.96750 0.89179 0.93754 1.23093 1.02205 0.94760 0.99223 1.22740 1.00854 0.95562 0.95187 0.89134 1.21329 0.96622 0.99919 0.81410 1.46275 1.32642 1.54905 1.06538 1.21240 0.83521 0.77858 0.85889 1.90587 1.25690 1.37539 1.86620 1.19309 0.93661 0.98879 0.90843 0.93164 1.22107 0.96828 1.01481 0.99681 1.20952 1.13186 1.30844 0.89272 0.88889 1.24989 0.96584 0.95239 0.96385 1.69889 1.39597 1.42866 1.01120 0.86906 0.83462 0.80878 0.77228 1.20560 1.22336 1.19318 0.87460 0.88342 0.91448 0.91164 0.91856 0.88970 0.92311 0.89778 0.90249 0.91185 0.91707 0.77433 0.92399 0.93345 0.94927 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 13.46 29.01 0.39 -1.55 16 2 C -0.14 -1.57 3.48 -101.07 -0.35 -1.92 16 3 C -0.12 -1.12 9.85 36.01 0.35 -0.76 16 4 C 0.12 1.28 3.54 -27.11 -0.10 1.18 16 5 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 6 O -0.37 -4.27 9.88 -35.23 -0.35 -4.62 16 7 C 0.05 0.41 7.63 37.93 0.29 0.70 16 8 C -0.16 -1.44 6.49 -25.17 -0.16 -1.60 16 9 C -0.12 -1.30 3.08 -89.06 -0.27 -1.57 16 10 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 11 C 0.13 1.89 3.91 -4.04 -0.02 1.88 16 12 N -0.75 -12.16 5.28 -60.29 -0.32 -12.48 16 13 C 0.53 11.63 7.15 -10.98 -0.08 11.56 16 14 O -0.53 -13.98 15.46 5.55 0.09 -13.89 16 15 C -0.01 -0.12 2.23 -92.92 -0.21 -0.33 16 16 H 0.05 1.15 7.20 -51.93 -0.37 0.77 16 17 C -0.14 -2.94 8.57 37.16 0.32 -2.62 16 18 C -0.50 -14.73 8.96 -34.44 -0.31 -15.04 16 19 H 0.09 3.10 7.00 -52.49 -0.37 2.74 16 20 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16 21 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 22 Si 0.88 21.39 24.37 -169.99 -4.14 17.25 16 23 H -0.28 -6.51 6.87 56.52 0.39 -6.12 16 24 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.27 -6.01 6.53 56.52 0.37 -5.64 16 26 H 0.11 1.35 6.96 -52.48 -0.37 0.99 16 27 H 0.10 1.07 7.84 -52.49 -0.41 0.66 16 28 H 0.07 0.63 7.79 -51.93 -0.40 0.22 16 29 H 0.07 0.72 6.97 -51.93 -0.36 0.36 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.91 7.71 -51.93 -0.40 0.51 16 34 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.07 1.08 5.49 -51.93 -0.29 0.80 16 36 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 37 H 0.39 5.23 7.79 -40.82 -0.32 4.91 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 40 H 0.03 0.52 7.56 -51.93 -0.39 0.13 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 322.23 15.07 4.86 4.86 Total: -1.00 -34.10 322.23 -5.74 -39.84 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -6.41 Total: 4.35 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -0.24 Total: -8.16 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.46 Total: -39.63 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.26 Total: -18.52 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.14 Total: 17.25 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.10 -5.74 -39.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597610080.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.972 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds