Wall clock time and date at job start Mon Mar 30 2020 05:20:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31005 * 1
3 3 C 1.50701 * 119.99426 * 2 1
4 4 C 1.50697 * 120.00270 * 179.97438 * 2 1 3
5 5 H 1.08991 * 110.33136 * 133.73488 * 4 2 1
6 6 O 1.44429 * 110.37030 * 11.48869 * 4 2 1
7 7 C 1.44428 * 105.27464 * 200.65663 * 6 4 2
8 8 C 1.54480 * 104.80017 * 40.51031 * 7 6 4
9 9 C 1.54480 * 110.37386 * 256.10947 * 4 2 1
10 10 H 1.09001 * 110.50699 * 261.45270 * 9 4 2
11 11 C 1.53000 * 110.51259 * 24.16243 * 9 4 2
12 12 N 1.46499 * 109.47144 * 182.65882 * 11 9 4
13 13 C 1.34775 * 119.99869 * 179.97438 * 12 11 9
14 14 O 1.21284 * 120.00099 * 0.02562 * 13 12 11
15 15 C 1.50704 * 120.00074 * 180.02562 * 13 12 11
16 16 H 1.09005 * 109.46727 * 300.00554 * 15 13 12
17 17 C 1.52998 * 109.47029 * 60.00080 * 15 13 12
18 18 C 1.50699 * 109.47094 * 180.02562 * 15 13 12
19 19 H 1.07997 * 120.00105 * 0.02562 * 18 15 13
20 20 C 1.37876 * 119.99689 * 179.97438 * 18 15 13
21 21 N 1.31517 * 119.99804 * 179.97438 * 20 18 15
22 22 Si 1.86798 * 120.00318 * 0.02562 * 20 18 15
23 23 H 1.48493 * 109.47516 * 89.99360 * 22 20 18
24 24 H 1.48499 * 109.47252 * 209.99982 * 22 20 18
25 25 H 1.48509 * 109.46907 * 329.99506 * 22 20 18
26 26 H 1.08005 * 119.99678 * 179.97438 * 1 2 3
27 27 H 1.07989 * 120.00259 * 359.72925 * 1 2 3
28 28 H 1.08997 * 109.47498 * 355.06147 * 3 2 1
29 29 H 1.09007 * 109.46646 * 115.06370 * 3 2 1
30 30 H 1.09005 * 109.46786 * 235.05798 * 3 2 1
31 31 H 1.08997 * 110.37273 * 159.34024 * 7 6 4
32 32 H 1.09003 * 110.37152 * 281.68656 * 7 6 4
33 33 H 1.08999 * 110.51025 * 94.67105 * 8 7 6
34 34 H 1.09010 * 110.50931 * 217.23694 * 8 7 6
35 35 H 1.09004 * 109.47256 * 302.66415 * 11 9 4
36 36 H 1.08997 * 109.46916 * 62.65927 * 11 9 4
37 37 H 0.96996 * 120.00040 * 0.02562 * 12 11 9
38 38 H 1.09004 * 109.46626 * 60.00222 * 17 15 13
39 39 H 1.08996 * 109.47208 * 179.97438 * 17 15 13
40 40 H 1.08998 * 109.47120 * 300.00447 * 17 15 13
41 41 H 0.97007 * 119.99710 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3101 0.0000 0.0000
3 6 2.0634 1.3052 0.0000
4 6 2.0636 -1.3050 0.0006
5 1 2.8648 -1.2800 -0.7379
6 8 1.1659 -2.4040 -0.2686
7 6 1.8409 -3.5782 0.2329
8 6 2.4838 -3.1261 1.5628
9 6 2.6336 -1.5963 1.4065
10 1 3.6834 -1.3079 1.4602
11 6 1.8201 -0.8658 2.4768
12 7 2.4172 -1.1061 3.7928
13 6 1.8657 -0.5574 4.8933
14 8 0.8748 0.1349 4.7943
15 6 2.4802 -0.8041 6.2471
16 1 2.4790 -1.8738 6.4571
17 6 3.9191 -0.2842 6.2563
18 6 1.6788 -0.0847 7.3012
19 1 0.8110 0.4930 7.0192
20 6 2.0529 -0.1649 8.6258
21 7 1.3538 0.4633 9.5457
22 14 3.5535 -1.1647 9.1138
23 1 4.7579 -0.2967 9.0837
24 1 3.3652 -1.7030 10.4849
25 1 3.7301 -2.2896 8.1604
26 1 -0.5400 -0.9354 -0.0004
27 1 -0.5400 0.9352 0.0044
28 1 1.3584 2.1317 -0.0885
29 1 2.6221 1.4021 0.9310
30 1 2.7548 1.3256 -0.8425
31 1 1.1249 -4.3805 0.4110
32 1 2.6093 -3.9030 -0.4688
33 1 1.8301 -3.3620 2.4026
34 1 3.4585 -3.5959 1.6951
35 1 1.8212 0.2039 2.2670
36 1 0.7950 -1.2362 2.4698
37 1 3.2099 -1.6595 3.8720
38 1 3.9203 0.7854 6.0462
39 1 4.3635 -0.4622 7.2356
40 1 4.4985 -0.8049 5.4939
41 1 1.6173 0.4072 10.4777
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597610080.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:20:15
Heat of formation + Delta-G solvation = -66.811021 kcal
Electronic energy + Delta-G solvation = -21024.147979 eV
Core-core repulsion = 17904.547156 eV
Total energy + Delta-G solvation = -3119.600823 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 267.162 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.31377 -38.70004 -35.39092 -34.59323 -33.79076 -31.95724 -31.01034 -29.01017
-27.26092 -25.90049 -25.12127 -23.07475 -22.46945 -20.73617 -19.43038 -18.49215
-16.90068 -16.64640 -16.29020 -15.76784 -15.44381 -15.24869 -14.76997 -14.36206
-14.00968 -13.80006 -13.22898 -13.16019 -13.00665 -12.79396 -12.46398 -12.27713
-12.11409 -11.77519 -11.54814 -11.42955 -11.20408 -11.18773 -10.90323 -10.69557
-10.55635 -10.28835 -10.04571 -9.62809 -9.08105 -9.05367 -8.66165 -8.56876
-8.47428 -6.03414 -4.03351 2.17641 3.23557 3.30756 3.36758 3.58092
3.63685 3.82658 4.31174 4.38855 4.49654 4.71229 4.86461 4.93367
5.02580 5.15870 5.25711 5.28951 5.36967 5.45716 5.51537 5.54189
5.63293 5.77772 5.83249 5.89080 5.96910 6.04612 6.11361 6.17165
6.34767 6.46163 6.46611 6.61027 6.73636 6.90458 7.00629 7.17686
7.56923 8.16303 8.58039 9.12811 9.19272 9.55807 11.09679
Molecular weight = 267.16amu
Principal moments of inertia in cm(-1)
A = 0.028638 B = 0.004592 C = 0.004292
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 977.492267 B = 6096.090494 C = 6521.965189
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C -0.141 4.141
3 C -0.116 4.116
4 C 0.122 3.878
5 H 0.077 0.923
6 O -0.367 6.367
7 C 0.046 3.954
8 C -0.155 4.155
9 C -0.124 4.124
10 H 0.090 0.910
11 C 0.131 3.869
12 N -0.749 5.749
13 C 0.527 3.473
14 O -0.530 6.530
15 C -0.005 4.005
16 H 0.051 0.949
17 C -0.143 4.143
18 C -0.504 4.504
19 H 0.093 0.907
20 C 0.069 3.931
21 N -0.897 5.897
22 Si 0.885 3.115
23 H -0.279 1.279
24 H -0.296 1.296
25 H -0.268 1.268
26 H 0.107 0.893
27 H 0.098 0.902
28 H 0.067 0.933
29 H 0.070 0.930
30 H 0.063 0.937
31 H 0.092 0.908
32 H 0.059 0.941
33 H 0.084 0.916
34 H 0.079 0.921
35 H 0.070 0.930
36 H 0.065 0.935
37 H 0.392 0.608
38 H 0.057 0.943
39 H 0.048 0.952
40 H 0.032 0.968
41 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.470 -6.536 -20.389 22.367
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.141 4.141
3 C -0.172 4.172
4 C 0.064 3.936
5 H 0.095 0.905
6 O -0.286 6.286
7 C -0.031 4.031
8 C -0.193 4.193
9 C -0.143 4.143
10 H 0.109 0.891
11 C 0.007 3.993
12 N -0.404 5.404
13 C 0.315 3.685
14 O -0.404 6.404
15 C -0.027 4.027
16 H 0.068 0.932
17 C -0.201 4.201
18 C -0.543 4.543
19 H 0.111 0.889
20 C -0.132 4.132
21 N -0.535 5.535
22 Si 0.715 3.285
23 H -0.206 1.206
24 H -0.223 1.223
25 H -0.193 1.193
26 H 0.125 0.875
27 H 0.117 0.883
28 H 0.086 0.914
29 H 0.088 0.912
30 H 0.081 0.919
31 H 0.110 0.890
32 H 0.077 0.923
33 H 0.102 0.898
34 H 0.098 0.902
35 H 0.088 0.912
36 H 0.083 0.917
37 H 0.226 0.774
38 H 0.076 0.924
39 H 0.067 0.933
40 H 0.051 0.949
41 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 5.478 -5.954 -20.354 21.903
hybrid contribution 1.485 -0.861 0.561 1.806
sum 6.962 -6.815 -19.794 22.061
Atomic orbital electron populations
1.23783 0.95310 1.02343 0.98538 1.21393 0.95761 0.93917 1.02996
1.20859 1.00342 0.93823 1.02224 1.21711 0.91173 0.86133 0.94599
0.90494 1.89131 1.41807 1.15926 1.81698 1.23387 0.96750 0.89179
0.93754 1.23093 1.02205 0.94760 0.99223 1.22740 1.00854 0.95562
0.95187 0.89134 1.21329 0.96622 0.99919 0.81410 1.46275 1.32642
1.54905 1.06538 1.21240 0.83521 0.77858 0.85889 1.90587 1.25690
1.37539 1.86620 1.19309 0.93661 0.98879 0.90843 0.93164 1.22107
0.96828 1.01481 0.99681 1.20952 1.13186 1.30844 0.89272 0.88889
1.24989 0.96584 0.95239 0.96385 1.69889 1.39597 1.42866 1.01120
0.86906 0.83462 0.80878 0.77228 1.20560 1.22336 1.19318 0.87460
0.88342 0.91448 0.91164 0.91856 0.88970 0.92311 0.89778 0.90249
0.91185 0.91707 0.77433 0.92399 0.93345 0.94927 0.92599
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.94 13.46 29.01 0.39 -1.55 16
2 C -0.14 -1.57 3.48 -101.07 -0.35 -1.92 16
3 C -0.12 -1.12 9.85 36.01 0.35 -0.76 16
4 C 0.12 1.28 3.54 -27.11 -0.10 1.18 16
5 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
6 O -0.37 -4.27 9.88 -35.23 -0.35 -4.62 16
7 C 0.05 0.41 7.63 37.93 0.29 0.70 16
8 C -0.16 -1.44 6.49 -25.17 -0.16 -1.60 16
9 C -0.12 -1.30 3.08 -89.06 -0.27 -1.57 16
10 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16
11 C 0.13 1.89 3.91 -4.04 -0.02 1.88 16
12 N -0.75 -12.16 5.28 -60.29 -0.32 -12.48 16
13 C 0.53 11.63 7.15 -10.98 -0.08 11.56 16
14 O -0.53 -13.98 15.46 5.55 0.09 -13.89 16
15 C -0.01 -0.12 2.23 -92.92 -0.21 -0.33 16
16 H 0.05 1.15 7.20 -51.93 -0.37 0.77 16
17 C -0.14 -2.94 8.57 37.16 0.32 -2.62 16
18 C -0.50 -14.73 8.96 -34.44 -0.31 -15.04 16
19 H 0.09 3.10 7.00 -52.49 -0.37 2.74 16
20 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16
21 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16
22 Si 0.88 21.39 24.37 -169.99 -4.14 17.25 16
23 H -0.28 -6.51 6.87 56.52 0.39 -6.12 16
24 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16
25 H -0.27 -6.01 6.53 56.52 0.37 -5.64 16
26 H 0.11 1.35 6.96 -52.48 -0.37 0.99 16
27 H 0.10 1.07 7.84 -52.49 -0.41 0.66 16
28 H 0.07 0.63 7.79 -51.93 -0.40 0.22 16
29 H 0.07 0.72 6.97 -51.93 -0.36 0.36 16
30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16
32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
33 H 0.08 0.91 7.71 -51.93 -0.40 0.51 16
34 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16
35 H 0.07 1.08 5.49 -51.93 -0.29 0.80 16
36 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16
37 H 0.39 5.23 7.79 -40.82 -0.32 4.91 16
38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
39 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16
40 H 0.03 0.52 7.56 -51.93 -0.39 0.13 16
41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16
LS Contribution 322.23 15.07 4.86 4.86
Total: -1.00 -34.10 322.23 -5.74 -39.84
By element:
Atomic # 1 Polarization: 10.76 SS G_CDS: -6.41 Total: 4.35 kcal
Atomic # 6 Polarization: -7.92 SS G_CDS: -0.24 Total: -8.16 kcal
Atomic # 7 Polarization: -40.08 SS G_CDS: 0.46 Total: -39.63 kcal
Atomic # 8 Polarization: -18.25 SS G_CDS: -0.26 Total: -18.52 kcal
Atomic # 14 Polarization: 21.39 SS G_CDS: -4.14 Total: 17.25 kcal
Total LS contribution 4.86 Total: 4.86 kcal
Total: -34.10 -5.74 -39.84 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597610080.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.972 kcal
(2) G-P(sol) polarization free energy of solvation -34.096 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.067 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.744 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.811 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds