Wall clock time and date at job start Mon Mar 30 2020 05:20:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31005 * 1
3 3 C 1.50701 * 119.99426 * 2 1
4 4 C 1.50697 * 120.00270 * 179.97438 * 2 1 3
5 5 H 1.08991 * 110.33136 * 133.73488 * 4 2 1
6 6 O 1.44429 * 110.37030 * 11.48869 * 4 2 1
7 7 C 1.44428 * 105.27464 * 200.65663 * 6 4 2
8 8 C 1.54480 * 104.80017 * 40.51031 * 7 6 4
9 9 C 1.54480 * 110.37386 * 256.10947 * 4 2 1
10 10 H 1.09001 * 110.50699 * 261.45270 * 9 4 2
11 11 C 1.53000 * 110.51259 * 24.16243 * 9 4 2
12 12 N 1.46499 * 109.47144 * 182.65882 * 11 9 4
13 13 C 1.34775 * 119.99869 * 179.97438 * 12 11 9
14 14 O 1.21284 * 120.00099 * 0.02562 * 13 12 11
15 15 C 1.50704 * 120.00074 * 180.02562 * 13 12 11
16 16 H 1.09005 * 109.46727 * 300.00554 * 15 13 12
17 17 C 1.52998 * 109.47029 * 60.00080 * 15 13 12
18 18 C 1.50699 * 109.47094 * 180.02562 * 15 13 12
19 19 H 1.07997 * 120.00105 * 0.02562 * 18 15 13
20 20 C 1.37876 * 119.99689 * 179.97438 * 18 15 13
21 21 N 1.31517 * 119.99804 * 179.97438 * 20 18 15
22 22 Si 1.86798 * 120.00318 * 0.02562 * 20 18 15
23 23 H 1.48493 * 109.47516 * 89.99360 * 22 20 18
24 24 H 1.48499 * 109.47252 * 209.99982 * 22 20 18
25 25 H 1.48509 * 109.46907 * 329.99506 * 22 20 18
26 26 H 1.08005 * 119.99678 * 179.97438 * 1 2 3
27 27 H 1.07989 * 120.00259 * 359.72925 * 1 2 3
28 28 H 1.08997 * 109.47498 * 355.06147 * 3 2 1
29 29 H 1.09007 * 109.46646 * 115.06370 * 3 2 1
30 30 H 1.09005 * 109.46786 * 235.05798 * 3 2 1
31 31 H 1.08997 * 110.37273 * 159.34024 * 7 6 4
32 32 H 1.09003 * 110.37152 * 281.68656 * 7 6 4
33 33 H 1.08999 * 110.51025 * 94.67105 * 8 7 6
34 34 H 1.09010 * 110.50931 * 217.23694 * 8 7 6
35 35 H 1.09004 * 109.47256 * 302.66415 * 11 9 4
36 36 H 1.08997 * 109.46916 * 62.65927 * 11 9 4
37 37 H 0.96996 * 120.00040 * 0.02562 * 12 11 9
38 38 H 1.09004 * 109.46626 * 60.00222 * 17 15 13
39 39 H 1.08996 * 109.47208 * 179.97438 * 17 15 13
40 40 H 1.08998 * 109.47120 * 300.00447 * 17 15 13
41 41 H 0.97007 * 119.99710 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3101 0.0000 0.0000
3 6 2.0634 1.3052 0.0000
4 6 2.0636 -1.3050 0.0006
5 1 2.8648 -1.2800 -0.7379
6 8 1.1659 -2.4040 -0.2686
7 6 1.8409 -3.5782 0.2329
8 6 2.4838 -3.1261 1.5628
9 6 2.6336 -1.5963 1.4065
10 1 3.6834 -1.3079 1.4602
11 6 1.8201 -0.8658 2.4768
12 7 2.4172 -1.1061 3.7928
13 6 1.8657 -0.5574 4.8933
14 8 0.8748 0.1349 4.7943
15 6 2.4802 -0.8041 6.2471
16 1 2.4790 -1.8738 6.4571
17 6 3.9191 -0.2842 6.2563
18 6 1.6788 -0.0847 7.3012
19 1 0.8110 0.4930 7.0192
20 6 2.0529 -0.1649 8.6258
21 7 1.3538 0.4633 9.5457
22 14 3.5535 -1.1647 9.1138
23 1 4.7579 -0.2967 9.0837
24 1 3.3652 -1.7030 10.4849
25 1 3.7301 -2.2896 8.1604
26 1 -0.5400 -0.9354 -0.0004
27 1 -0.5400 0.9352 0.0044
28 1 1.3584 2.1317 -0.0885
29 1 2.6221 1.4021 0.9310
30 1 2.7548 1.3256 -0.8425
31 1 1.1249 -4.3805 0.4110
32 1 2.6093 -3.9030 -0.4688
33 1 1.8301 -3.3620 2.4026
34 1 3.4585 -3.5959 1.6951
35 1 1.8212 0.2039 2.2670
36 1 0.7950 -1.2362 2.4698
37 1 3.2099 -1.6595 3.8720
38 1 3.9203 0.7854 6.0462
39 1 4.3635 -0.4622 7.2356
40 1 4.4985 -0.8049 5.4939
41 1 1.6173 0.4072 10.4777
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597610080.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:20:15
Heat of formation + Delta-G solvation = -92.719194 kcal
Electronic energy + Delta-G solvation = -21025.271441 eV
Core-core repulsion = 17904.547156 eV
Total energy + Delta-G solvation = -3120.724286 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 267.162 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.28015 -40.28502 -36.37552 -35.81763 -35.76761 -33.54752 -32.56224 -29.84062
-28.09128 -27.22210 -27.00261 -24.31866 -23.74011 -21.65171 -21.08556 -19.42556
-18.80978 -17.86582 -17.56999 -16.93266 -16.82175 -16.39653 -16.11813 -15.90588
-15.21892 -14.94489 -14.80039 -14.51874 -14.09867 -13.98383 -13.77010 -13.69573
-13.36357 -12.97608 -12.81856 -12.55938 -12.53024 -12.23724 -12.14345 -12.03508
-11.99878 -11.51076 -11.45075 -11.21296 -10.82600 -10.76188 -10.43687 -9.98571
-9.92281 -8.26332 -6.34474 1.27686 1.33794 1.40956 1.52318 1.88108
2.33434 2.36096 2.92606 3.07343 3.48954 3.61316 3.87363 4.05786
4.15911 4.22217 4.28225 4.35714 4.40601 4.43853 4.58216 4.61990
4.67768 4.72001 4.79564 4.85396 4.88713 4.92827 5.00700 5.05805
5.07302 5.17195 5.19714 5.46712 5.53947 5.57704 5.63046 5.76821
6.08351 6.27514 6.69908 6.87160 7.27157 7.52753 8.91696
Molecular weight = 267.16amu
Principal moments of inertia in cm(-1)
A = 0.028638 B = 0.004592 C = 0.004292
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 977.492267 B = 6096.090494 C = 6521.965189
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.138 4.138
3 C -0.115 4.115
4 C 0.120 3.880
5 H 0.105 0.895
6 O -0.393 6.393
7 C 0.042 3.958
8 C -0.152 4.152
9 C -0.115 4.115
10 H 0.120 0.880
11 C 0.133 3.867
12 N -0.719 5.719
13 C 0.525 3.475
14 O -0.588 6.588
15 C -0.009 4.009
16 H 0.069 0.931
17 C -0.138 4.138
18 C -0.523 4.523
19 H 0.026 0.974
20 C 0.004 3.996
21 N -0.955 5.955
22 Si 0.963 3.037
23 H -0.259 1.259
24 H -0.301 1.301
25 H -0.228 1.228
26 H 0.094 0.906
27 H 0.099 0.901
28 H 0.064 0.936
29 H 0.065 0.935
30 H 0.087 0.913
31 H 0.094 0.906
32 H 0.084 0.916
33 H 0.064 0.936
34 H 0.111 0.889
35 H 0.059 0.941
36 H 0.037 0.963
37 H 0.413 0.587
38 H 0.045 0.955
39 H 0.045 0.955
40 H 0.089 0.911
41 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.737 -8.900 -22.076 26.112
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C -0.139 4.139
3 C -0.172 4.172
4 C 0.062 3.938
5 H 0.122 0.878
6 O -0.313 6.313
7 C -0.034 4.034
8 C -0.190 4.190
9 C -0.134 4.134
10 H 0.138 0.862
11 C 0.010 3.990
12 N -0.373 5.373
13 C 0.313 3.687
14 O -0.467 6.467
15 C -0.030 4.030
16 H 0.087 0.913
17 C -0.195 4.195
18 C -0.561 4.561
19 H 0.044 0.956
20 C -0.192 4.192
21 N -0.595 5.595
22 Si 0.787 3.213
23 H -0.185 1.185
24 H -0.229 1.229
25 H -0.151 1.151
26 H 0.112 0.888
27 H 0.117 0.883
28 H 0.083 0.917
29 H 0.084 0.916
30 H 0.106 0.894
31 H 0.112 0.888
32 H 0.102 0.898
33 H 0.082 0.918
34 H 0.129 0.871
35 H 0.078 0.922
36 H 0.055 0.945
37 H 0.250 0.750
38 H 0.064 0.936
39 H 0.064 0.936
40 H 0.107 0.893
41 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 9.788 -8.358 -22.106 25.580
hybrid contribution 0.020 -0.078 1.027 1.030
sum 9.808 -8.436 -21.079 24.733
Atomic orbital electron populations
1.23777 0.96101 1.01854 1.00747 1.21735 0.95657 0.95337 1.01123
1.20887 1.00518 0.92874 1.02923 1.21876 0.91437 0.85306 0.95183
0.87767 1.89127 1.43042 1.17065 1.82026 1.23578 0.97365 0.88387
0.94110 1.23109 1.03455 0.93762 0.98645 1.22726 1.01400 0.95974
0.93308 0.86156 1.21375 0.96154 0.99944 0.81542 1.45906 1.32426
1.53245 1.05762 1.21101 0.82905 0.77676 0.87020 1.90578 1.28276
1.40427 1.87415 1.19267 0.94942 0.98980 0.89832 0.91302 1.22009
0.94694 1.01398 1.01445 1.21118 1.12332 1.30940 0.91689 0.95575
1.26087 1.00760 0.96548 0.95839 1.70094 1.42412 1.45239 1.01751
0.85662 0.78421 0.80076 0.77111 1.18483 1.22877 1.15134 0.88798
0.88254 0.91724 0.91586 0.89447 0.88792 0.89820 0.91757 0.87097
0.92241 0.94497 0.74955 0.93617 0.93605 0.89275 0.92428
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -4.65 13.46 67.78 0.91 -3.74 16
2 C -0.14 -2.96 3.48 -16.49 -0.06 -3.02 16
3 C -0.12 -2.05 9.85 71.24 0.70 -1.35 16
4 C 0.12 2.19 3.54 30.35 0.11 2.30 16
5 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16
6 O -0.39 -8.51 9.88 -148.98 -1.47 -9.98 16
7 C 0.04 0.62 7.63 72.49 0.55 1.18 16
8 C -0.15 -2.25 6.49 31.61 0.21 -2.05 16
9 C -0.12 -2.01 3.08 -9.78 -0.03 -2.04 16
10 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16
11 C 0.13 3.71 3.91 86.38 0.34 4.04 16
12 N -0.72 -21.76 5.28 -463.05 -2.45 -24.20 16
13 C 0.52 23.13 7.15 87.66 0.63 23.76 16
14 O -0.59 -32.63 15.46 -3.04 -0.05 -32.68 16
15 C -0.01 -0.39 2.23 -12.29 -0.03 -0.42 16
16 H 0.07 2.91 7.20 -2.38 -0.02 2.89 16
17 C -0.14 -5.13 8.57 71.98 0.62 -4.51 16
18 C -0.52 -31.65 8.96 25.60 0.23 -31.42 16
19 H 0.03 1.88 7.00 -2.91 -0.02 1.86 16
20 C 0.00 0.22 5.45 84.65 0.46 0.68 16
21 N -0.95 -61.97 13.96 21.45 0.30 -61.67 16
22 Si 0.96 42.92 24.37 68.60 1.67 44.59 16
23 H -0.26 -10.73 6.87 99.48 0.68 -10.05 16
24 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16
25 H -0.23 -8.69 6.53 99.48 0.65 -8.04 16
26 H 0.09 2.53 6.96 -2.91 -0.02 2.51 16
27 H 0.10 2.33 7.84 -2.92 -0.02 2.30 16
28 H 0.06 1.17 7.79 -2.39 -0.02 1.15 16
29 H 0.07 1.25 6.97 -2.38 -0.02 1.23 16
30 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16
31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16
32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16
33 H 0.06 1.23 7.71 -2.39 -0.02 1.21 16
34 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16
35 H 0.06 1.82 5.49 -2.39 -0.01 1.80 16
36 H 0.04 1.25 8.08 -2.39 -0.02 1.23 16
37 H 0.41 9.06 7.79 -92.71 -0.72 8.34 16
38 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16
39 H 0.05 1.74 3.27 -2.39 -0.01 1.73 16
40 H 0.09 2.30 7.56 -2.39 -0.02 2.28 16
41 H 0.27 16.01 8.31 -92.70 -0.77 15.23 16
Total: -1.00 -81.73 322.23 2.86 -78.87
By element:
Atomic # 1 Polarization: 21.43 SS G_CDS: 0.22 Total: 21.65 kcal
Atomic # 6 Polarization: -21.22 SS G_CDS: 4.64 Total: -16.58 kcal
Atomic # 7 Polarization: -83.73 SS G_CDS: -2.15 Total: -85.87 kcal
Atomic # 8 Polarization: -41.14 SS G_CDS: -1.52 Total: -42.65 kcal
Atomic # 14 Polarization: 42.92 SS G_CDS: 1.67 Total: 44.59 kcal
Total: -81.73 2.86 -78.87 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597610080.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.852 kcal
(2) G-P(sol) polarization free energy of solvation -81.730 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.582 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.867 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.719 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds