Wall clock time and date at job start Mon Mar 30 2020 05:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99426 * 2 1 4 4 C 1.50697 * 120.00270 * 179.97438 * 2 1 3 5 5 H 1.08991 * 110.33136 * 133.73488 * 4 2 1 6 6 O 1.44429 * 110.37030 * 11.48869 * 4 2 1 7 7 C 1.44428 * 105.27464 * 200.65663 * 6 4 2 8 8 C 1.54480 * 104.80017 * 40.51031 * 7 6 4 9 9 C 1.54480 * 110.37386 * 256.10947 * 4 2 1 10 10 H 1.09001 * 110.50699 * 261.45270 * 9 4 2 11 11 C 1.53000 * 110.51259 * 24.16243 * 9 4 2 12 12 N 1.46499 * 109.47144 * 182.65882 * 11 9 4 13 13 C 1.34775 * 119.99869 * 179.97438 * 12 11 9 14 14 O 1.21284 * 120.00099 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.00074 * 180.02562 * 13 12 11 16 16 H 1.09005 * 109.46727 * 300.00554 * 15 13 12 17 17 C 1.52998 * 109.47029 * 60.00080 * 15 13 12 18 18 C 1.50699 * 109.47094 * 180.02562 * 15 13 12 19 19 H 1.07997 * 120.00105 * 0.02562 * 18 15 13 20 20 C 1.37876 * 119.99689 * 179.97438 * 18 15 13 21 21 N 1.31517 * 119.99804 * 179.97438 * 20 18 15 22 22 Si 1.86798 * 120.00318 * 0.02562 * 20 18 15 23 23 H 1.48493 * 109.47516 * 89.99360 * 22 20 18 24 24 H 1.48499 * 109.47252 * 209.99982 * 22 20 18 25 25 H 1.48509 * 109.46907 * 329.99506 * 22 20 18 26 26 H 1.08005 * 119.99678 * 179.97438 * 1 2 3 27 27 H 1.07989 * 120.00259 * 359.72925 * 1 2 3 28 28 H 1.08997 * 109.47498 * 355.06147 * 3 2 1 29 29 H 1.09007 * 109.46646 * 115.06370 * 3 2 1 30 30 H 1.09005 * 109.46786 * 235.05798 * 3 2 1 31 31 H 1.08997 * 110.37273 * 159.34024 * 7 6 4 32 32 H 1.09003 * 110.37152 * 281.68656 * 7 6 4 33 33 H 1.08999 * 110.51025 * 94.67105 * 8 7 6 34 34 H 1.09010 * 110.50931 * 217.23694 * 8 7 6 35 35 H 1.09004 * 109.47256 * 302.66415 * 11 9 4 36 36 H 1.08997 * 109.46916 * 62.65927 * 11 9 4 37 37 H 0.96996 * 120.00040 * 0.02562 * 12 11 9 38 38 H 1.09004 * 109.46626 * 60.00222 * 17 15 13 39 39 H 1.08996 * 109.47208 * 179.97438 * 17 15 13 40 40 H 1.08998 * 109.47120 * 300.00447 * 17 15 13 41 41 H 0.97007 * 119.99710 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3050 0.0006 5 1 2.8648 -1.2800 -0.7379 6 8 1.1659 -2.4040 -0.2686 7 6 1.8409 -3.5782 0.2329 8 6 2.4838 -3.1261 1.5628 9 6 2.6336 -1.5963 1.4065 10 1 3.6834 -1.3079 1.4602 11 6 1.8201 -0.8658 2.4768 12 7 2.4172 -1.1061 3.7928 13 6 1.8657 -0.5574 4.8933 14 8 0.8748 0.1349 4.7943 15 6 2.4802 -0.8041 6.2471 16 1 2.4790 -1.8738 6.4571 17 6 3.9191 -0.2842 6.2563 18 6 1.6788 -0.0847 7.3012 19 1 0.8110 0.4930 7.0192 20 6 2.0529 -0.1649 8.6258 21 7 1.3538 0.4633 9.5457 22 14 3.5535 -1.1647 9.1138 23 1 4.7579 -0.2967 9.0837 24 1 3.3652 -1.7030 10.4849 25 1 3.7301 -2.2896 8.1604 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5400 0.9352 0.0044 28 1 1.3584 2.1317 -0.0885 29 1 2.6221 1.4021 0.9310 30 1 2.7548 1.3256 -0.8425 31 1 1.1249 -4.3805 0.4110 32 1 2.6093 -3.9030 -0.4688 33 1 1.8301 -3.3620 2.4026 34 1 3.4585 -3.5959 1.6951 35 1 1.8212 0.2039 2.2670 36 1 0.7950 -1.2362 2.4698 37 1 3.2099 -1.6595 3.8720 38 1 3.9203 0.7854 6.0462 39 1 4.3635 -0.4622 7.2356 40 1 4.4985 -0.8049 5.4939 41 1 1.6173 0.4072 10.4777 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597610080.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:15 Heat of formation + Delta-G solvation = -92.719194 kcal Electronic energy + Delta-G solvation = -21025.271441 eV Core-core repulsion = 17904.547156 eV Total energy + Delta-G solvation = -3120.724286 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.28015 -40.28502 -36.37552 -35.81763 -35.76761 -33.54752 -32.56224 -29.84062 -28.09128 -27.22210 -27.00261 -24.31866 -23.74011 -21.65171 -21.08556 -19.42556 -18.80978 -17.86582 -17.56999 -16.93266 -16.82175 -16.39653 -16.11813 -15.90588 -15.21892 -14.94489 -14.80039 -14.51874 -14.09867 -13.98383 -13.77010 -13.69573 -13.36357 -12.97608 -12.81856 -12.55938 -12.53024 -12.23724 -12.14345 -12.03508 -11.99878 -11.51076 -11.45075 -11.21296 -10.82600 -10.76188 -10.43687 -9.98571 -9.92281 -8.26332 -6.34474 1.27686 1.33794 1.40956 1.52318 1.88108 2.33434 2.36096 2.92606 3.07343 3.48954 3.61316 3.87363 4.05786 4.15911 4.22217 4.28225 4.35714 4.40601 4.43853 4.58216 4.61990 4.67768 4.72001 4.79564 4.85396 4.88713 4.92827 5.00700 5.05805 5.07302 5.17195 5.19714 5.46712 5.53947 5.57704 5.63046 5.76821 6.08351 6.27514 6.69908 6.87160 7.27157 7.52753 8.91696 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028638 B = 0.004592 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.492267 B = 6096.090494 C = 6521.965189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.138 4.138 3 C -0.115 4.115 4 C 0.120 3.880 5 H 0.105 0.895 6 O -0.393 6.393 7 C 0.042 3.958 8 C -0.152 4.152 9 C -0.115 4.115 10 H 0.120 0.880 11 C 0.133 3.867 12 N -0.719 5.719 13 C 0.525 3.475 14 O -0.588 6.588 15 C -0.009 4.009 16 H 0.069 0.931 17 C -0.138 4.138 18 C -0.523 4.523 19 H 0.026 0.974 20 C 0.004 3.996 21 N -0.955 5.955 22 Si 0.963 3.037 23 H -0.259 1.259 24 H -0.301 1.301 25 H -0.228 1.228 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.059 0.941 36 H 0.037 0.963 37 H 0.413 0.587 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.089 0.911 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.737 -8.900 -22.076 26.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.139 4.139 3 C -0.172 4.172 4 C 0.062 3.938 5 H 0.122 0.878 6 O -0.313 6.313 7 C -0.034 4.034 8 C -0.190 4.190 9 C -0.134 4.134 10 H 0.138 0.862 11 C 0.010 3.990 12 N -0.373 5.373 13 C 0.313 3.687 14 O -0.467 6.467 15 C -0.030 4.030 16 H 0.087 0.913 17 C -0.195 4.195 18 C -0.561 4.561 19 H 0.044 0.956 20 C -0.192 4.192 21 N -0.595 5.595 22 Si 0.787 3.213 23 H -0.185 1.185 24 H -0.229 1.229 25 H -0.151 1.151 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.250 0.750 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.788 -8.358 -22.106 25.580 hybrid contribution 0.020 -0.078 1.027 1.030 sum 9.808 -8.436 -21.079 24.733 Atomic orbital electron populations 1.23777 0.96101 1.01854 1.00747 1.21735 0.95657 0.95337 1.01123 1.20887 1.00518 0.92874 1.02923 1.21876 0.91437 0.85306 0.95183 0.87767 1.89127 1.43042 1.17065 1.82026 1.23578 0.97365 0.88387 0.94110 1.23109 1.03455 0.93762 0.98645 1.22726 1.01400 0.95974 0.93308 0.86156 1.21375 0.96154 0.99944 0.81542 1.45906 1.32426 1.53245 1.05762 1.21101 0.82905 0.77676 0.87020 1.90578 1.28276 1.40427 1.87415 1.19267 0.94942 0.98980 0.89832 0.91302 1.22009 0.94694 1.01398 1.01445 1.21118 1.12332 1.30940 0.91689 0.95575 1.26087 1.00760 0.96548 0.95839 1.70094 1.42412 1.45239 1.01751 0.85662 0.78421 0.80076 0.77111 1.18483 1.22877 1.15134 0.88798 0.88254 0.91724 0.91586 0.89447 0.88792 0.89820 0.91757 0.87097 0.92241 0.94497 0.74955 0.93617 0.93605 0.89275 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.65 13.46 67.78 0.91 -3.74 16 2 C -0.14 -2.96 3.48 -16.49 -0.06 -3.02 16 3 C -0.12 -2.05 9.85 71.24 0.70 -1.35 16 4 C 0.12 2.19 3.54 30.35 0.11 2.30 16 5 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 6 O -0.39 -8.51 9.88 -148.98 -1.47 -9.98 16 7 C 0.04 0.62 7.63 72.49 0.55 1.18 16 8 C -0.15 -2.25 6.49 31.61 0.21 -2.05 16 9 C -0.12 -2.01 3.08 -9.78 -0.03 -2.04 16 10 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 11 C 0.13 3.71 3.91 86.38 0.34 4.04 16 12 N -0.72 -21.76 5.28 -463.05 -2.45 -24.20 16 13 C 0.52 23.13 7.15 87.66 0.63 23.76 16 14 O -0.59 -32.63 15.46 -3.04 -0.05 -32.68 16 15 C -0.01 -0.39 2.23 -12.29 -0.03 -0.42 16 16 H 0.07 2.91 7.20 -2.38 -0.02 2.89 16 17 C -0.14 -5.13 8.57 71.98 0.62 -4.51 16 18 C -0.52 -31.65 8.96 25.60 0.23 -31.42 16 19 H 0.03 1.88 7.00 -2.91 -0.02 1.86 16 20 C 0.00 0.22 5.45 84.65 0.46 0.68 16 21 N -0.95 -61.97 13.96 21.45 0.30 -61.67 16 22 Si 0.96 42.92 24.37 68.60 1.67 44.59 16 23 H -0.26 -10.73 6.87 99.48 0.68 -10.05 16 24 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 25 H -0.23 -8.69 6.53 99.48 0.65 -8.04 16 26 H 0.09 2.53 6.96 -2.91 -0.02 2.51 16 27 H 0.10 2.33 7.84 -2.92 -0.02 2.30 16 28 H 0.06 1.17 7.79 -2.39 -0.02 1.15 16 29 H 0.07 1.25 6.97 -2.38 -0.02 1.23 16 30 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 1.23 7.71 -2.39 -0.02 1.21 16 34 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.06 1.82 5.49 -2.39 -0.01 1.80 16 36 H 0.04 1.25 8.08 -2.39 -0.02 1.23 16 37 H 0.41 9.06 7.79 -92.71 -0.72 8.34 16 38 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.05 1.74 3.27 -2.39 -0.01 1.73 16 40 H 0.09 2.30 7.56 -2.39 -0.02 2.28 16 41 H 0.27 16.01 8.31 -92.70 -0.77 15.23 16 Total: -1.00 -81.73 322.23 2.86 -78.87 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.22 Total: 21.65 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: 4.64 Total: -16.58 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -2.15 Total: -85.87 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -1.52 Total: -42.65 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.67 Total: 44.59 kcal Total: -81.73 2.86 -78.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597610080.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.852 kcal (2) G-P(sol) polarization free energy of solvation -81.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds