Wall clock time and date at job start Mon Mar 30 2020 05:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 119.99907 * 2 1 4 4 C 1.50705 * 120.00483 * 179.97438 * 2 1 3 5 5 H 1.09001 * 110.41420 * 352.68817 * 4 2 1 6 6 O 1.44426 * 110.36957 * 230.38491 * 4 2 1 7 7 C 1.44428 * 105.27224 * 200.65477 * 6 4 2 8 8 C 1.54794 * 104.85732 * 40.45869 * 7 6 4 9 9 C 1.54477 * 110.37330 * 115.00084 * 4 2 1 10 10 H 1.09002 * 110.51371 * 24.16542 * 9 4 2 11 11 C 1.53004 * 110.50913 * 261.59374 * 9 4 2 12 12 N 1.46495 * 109.46963 * 176.90800 * 11 9 4 13 13 C 1.34774 * 120.00117 * 180.02562 * 12 11 9 14 14 O 1.21282 * 119.99837 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.00330 * 179.97438 * 13 12 11 16 16 H 1.08998 * 109.46840 * 59.99294 * 15 13 12 17 17 C 1.53003 * 109.46697 * 299.99623 * 15 13 12 18 18 C 1.50695 * 109.47453 * 179.97438 * 15 13 12 19 19 H 1.08006 * 119.99744 * 359.97438 * 18 15 13 20 20 C 1.37873 * 120.00144 * 180.02562 * 18 15 13 21 21 N 1.31512 * 120.00125 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 120.00034 * 179.97438 * 20 18 15 23 23 H 1.48502 * 109.47417 * 89.99689 * 22 20 18 24 24 H 1.48494 * 109.47535 * 209.99802 * 22 20 18 25 25 H 1.48504 * 109.47240 * 329.99873 * 22 20 18 26 26 H 1.08005 * 119.99605 * 179.97438 * 1 2 3 27 27 H 1.07993 * 119.99989 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46904 * 269.99620 * 3 2 1 29 29 H 1.08995 * 109.47277 * 29.99663 * 3 2 1 30 30 H 1.08996 * 109.47561 * 150.00199 * 3 2 1 31 31 H 1.08996 * 110.37696 * 159.34250 * 7 6 4 32 32 H 1.09002 * 110.37347 * 281.56856 * 7 6 4 33 33 H 1.09000 * 110.61457 * 217.51047 * 8 7 6 34 34 H 1.08999 * 110.55754 * 94.70081 * 8 7 6 35 35 H 1.09003 * 109.46866 * 296.90182 * 11 9 4 36 36 H 1.08993 * 109.47133 * 56.90648 * 11 9 4 37 37 H 0.97008 * 120.00335 * 359.97438 * 12 11 9 38 38 H 1.08994 * 109.47311 * 59.99852 * 17 15 13 39 39 H 1.09003 * 109.47055 * 180.02562 * 17 15 13 40 40 H 1.08998 * 109.47207 * 299.99447 * 17 15 13 41 41 H 0.96998 * 119.99931 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 1 1.3763 -2.1410 0.1310 6 8 3.0626 -1.3082 1.0436 7 6 4.0142 -2.3231 0.6558 8 6 4.1756 -2.1521 -0.8741 9 6 2.8625 -1.4653 -1.3118 10 1 3.0701 -0.4909 -1.7540 11 6 2.0987 -2.3492 -2.2999 12 7 2.8403 -2.4257 -3.5609 13 6 2.3543 -3.1540 -4.5855 14 8 1.3031 -3.7465 -4.4633 15 6 3.1169 -3.2322 -5.8829 16 1 4.1025 -3.6602 -5.6998 17 6 3.2717 -1.8274 -6.4689 18 6 2.3647 -4.1028 -6.8561 19 1 1.4281 -4.5547 -6.5641 20 6 2.8724 -4.3234 -8.1188 21 7 4.0130 -3.7736 -8.4742 22 14 1.9403 -5.4031 -9.3249 23 1 1.0043 -4.5661 -10.1177 24 1 2.9026 -6.0702 -10.2382 25 1 1.1728 -6.4317 -8.5776 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 2.2452 1.6197 -1.0277 29 1 1.4744 2.0648 0.5137 30 1 3.0159 1.1749 0.5138 31 1 4.9676 -2.1614 1.1587 32 1 3.6270 -3.3151 0.8884 33 1 4.2794 -3.1223 -1.3599 34 1 5.0323 -1.5172 -1.1000 35 1 1.9883 -3.3499 -1.8820 36 1 1.1132 -1.9213 -2.4833 37 1 3.6809 -1.9515 -3.6588 38 1 3.8160 -1.1980 -5.7649 39 1 3.8229 -1.8840 -7.4076 40 1 2.2861 -1.3995 -6.6521 41 1 4.3701 -3.9284 -9.3627 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597610082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:18 Heat of formation + Delta-G solvation = -81.116356 kcal Electronic energy + Delta-G solvation = -20661.809824 eV Core-core repulsion = 17541.588675 eV Total energy + Delta-G solvation = -3120.221149 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.13070 -38.60601 -35.30443 -34.77704 -33.71705 -31.83658 -30.34291 -29.02755 -27.47714 -25.51497 -25.10731 -23.05058 -22.32154 -20.58708 -19.44431 -18.86925 -16.61094 -16.28552 -16.17431 -15.75806 -15.37126 -14.98446 -14.64538 -14.36081 -13.96116 -13.60683 -13.41548 -13.27184 -13.03487 -12.66709 -12.37804 -11.97733 -11.75026 -11.64601 -11.47519 -11.20196 -11.01772 -10.97994 -10.74858 -10.70668 -10.63904 -10.25320 -9.98877 -9.95231 -9.27267 -8.96819 -8.60674 -8.44801 -8.31554 -6.02617 -4.05595 1.95445 3.34177 3.39830 3.46680 3.74197 3.77799 3.85704 4.34564 4.47050 4.61895 4.69896 4.80220 4.90120 5.04762 5.12265 5.28095 5.30949 5.41182 5.50950 5.56140 5.62602 5.70868 5.74391 5.78274 5.85246 5.93402 6.08814 6.30867 6.39300 6.54875 6.61966 6.71581 6.83012 6.93083 7.07457 7.47979 7.76148 7.99707 8.15536 8.45703 9.03576 9.25042 9.60066 11.05035 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.031704 B = 0.003885 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.961020 B = 7205.718486 C = 7388.955487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.119 4.119 3 C -0.116 4.116 4 C 0.118 3.882 5 H 0.077 0.923 6 O -0.366 6.366 7 C 0.044 3.956 8 C -0.154 4.154 9 C -0.124 4.124 10 H 0.091 0.909 11 C 0.130 3.870 12 N -0.746 5.746 13 C 0.519 3.481 14 O -0.547 6.547 15 C 0.029 3.971 16 H 0.052 0.948 17 C -0.132 4.132 18 C -0.500 4.500 19 H 0.074 0.926 20 C 0.058 3.942 21 N -0.897 5.897 22 Si 0.900 3.100 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.273 1.273 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.396 0.604 38 H 0.011 0.989 39 H 0.093 0.907 40 H 0.030 0.970 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.790 8.191 16.968 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.119 4.119 3 C -0.173 4.173 4 C 0.060 3.940 5 H 0.095 0.905 6 O -0.285 6.285 7 C -0.032 4.032 8 C -0.191 4.191 9 C -0.144 4.144 10 H 0.110 0.890 11 C 0.006 3.994 12 N -0.400 5.400 13 C 0.308 3.692 14 O -0.423 6.423 15 C 0.008 3.992 16 H 0.069 0.931 17 C -0.190 4.190 18 C -0.539 4.539 19 H 0.092 0.908 20 C -0.143 4.143 21 N -0.537 5.537 22 Si 0.728 3.272 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.198 1.198 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.229 0.771 38 H 0.030 0.970 39 H 0.111 0.889 40 H 0.050 0.950 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.133 7.878 17.087 18.816 hybrid contribution -0.023 -0.443 -0.915 1.017 sum 0.110 7.435 16.173 17.800 Atomic orbital electron populations 1.23752 0.94959 1.02383 1.00716 1.21499 0.94969 0.94895 1.00564 1.20778 1.00710 0.93762 1.02037 1.21933 0.90389 0.95449 0.86192 0.90491 1.89143 1.37073 1.57763 1.44561 1.23472 0.93386 0.91969 0.94421 1.23122 0.97673 1.02258 0.96074 1.22786 0.95220 1.00521 0.95825 0.89023 1.21137 0.95245 0.98693 0.84339 1.46269 1.26364 1.53975 1.13430 1.21983 0.85856 0.75868 0.85451 1.90530 1.23958 1.44912 1.82860 1.18870 0.96358 0.95991 0.87987 0.93051 1.21738 0.99875 0.94826 1.02535 1.21149 1.07658 1.28352 0.96696 0.90816 1.24948 0.95047 0.96102 0.98165 1.69870 1.19106 1.44539 1.20167 0.86456 0.79484 0.80669 0.80628 1.20678 1.21305 1.19752 0.88162 0.87805 0.91476 0.91938 0.91133 0.89015 0.92149 0.89611 0.90310 0.92066 0.91942 0.77074 0.96974 0.88864 0.95036 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 13.91 29.02 0.40 -1.38 16 2 C -0.12 -1.27 5.13 -101.06 -0.52 -1.79 16 3 C -0.12 -1.09 9.45 36.01 0.34 -0.75 16 4 C 0.12 1.32 3.04 -27.11 -0.08 1.24 16 5 H 0.08 0.86 7.59 -51.93 -0.39 0.47 16 6 O -0.37 -4.29 10.77 -35.23 -0.38 -4.67 16 7 C 0.04 0.42 7.64 38.10 0.29 0.71 16 8 C -0.15 -1.53 6.53 -24.99 -0.16 -1.69 16 9 C -0.12 -1.40 2.65 -89.05 -0.24 -1.64 16 10 H 0.09 1.02 7.40 -51.93 -0.38 0.63 16 11 C 0.13 1.89 4.77 -4.04 -0.02 1.87 16 12 N -0.75 -12.69 5.29 -60.30 -0.32 -13.00 16 13 C 0.52 11.79 7.15 -10.98 -0.08 11.71 16 14 O -0.55 -14.34 15.46 5.56 0.09 -14.26 16 15 C 0.03 0.72 2.64 -92.92 -0.25 0.48 16 16 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 17 C -0.13 -3.02 8.87 37.16 0.33 -2.69 16 18 C -0.50 -14.24 8.37 -34.44 -0.29 -14.53 16 19 H 0.07 2.22 6.75 -52.48 -0.35 1.87 16 20 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 21 N -0.90 -25.18 11.32 55.43 0.63 -24.55 16 22 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 26 H 0.10 0.95 7.88 -52.48 -0.41 0.54 16 27 H 0.10 0.88 8.04 -52.49 -0.42 0.46 16 28 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 29 H 0.06 0.51 8.06 -51.93 -0.42 0.09 16 30 H 0.07 0.68 7.61 -51.93 -0.40 0.29 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.91 7.71 -51.93 -0.40 0.51 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.40 5.83 7.80 -40.82 -0.32 5.51 16 38 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 39 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 335.04 15.07 5.05 5.05 Total: -1.00 -31.53 335.04 -7.04 -38.57 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.72 Total: 2.95 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -0.36 Total: -6.94 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.31 Total: -37.55 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.29 Total: -18.93 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.53 -7.04 -38.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597610082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.545 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds