Wall clock time and date at job start Mon Mar 30 2020 05:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 119.99907 * 2 1 4 4 C 1.50705 * 120.00483 * 179.97438 * 2 1 3 5 5 H 1.09001 * 110.41420 * 352.68817 * 4 2 1 6 6 O 1.44426 * 110.36957 * 230.38491 * 4 2 1 7 7 C 1.44428 * 105.27224 * 200.65477 * 6 4 2 8 8 C 1.54794 * 104.85732 * 40.45869 * 7 6 4 9 9 C 1.54477 * 110.37330 * 115.00084 * 4 2 1 10 10 H 1.09002 * 110.51371 * 24.16542 * 9 4 2 11 11 C 1.53004 * 110.50913 * 261.59374 * 9 4 2 12 12 N 1.46495 * 109.46963 * 176.90800 * 11 9 4 13 13 C 1.34774 * 120.00117 * 180.02562 * 12 11 9 14 14 O 1.21282 * 119.99837 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.00330 * 179.97438 * 13 12 11 16 16 H 1.08998 * 109.46840 * 59.99294 * 15 13 12 17 17 C 1.53003 * 109.46697 * 299.99623 * 15 13 12 18 18 C 1.50695 * 109.47453 * 179.97438 * 15 13 12 19 19 H 1.08006 * 119.99744 * 359.97438 * 18 15 13 20 20 C 1.37873 * 120.00144 * 180.02562 * 18 15 13 21 21 N 1.31512 * 120.00125 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 120.00034 * 179.97438 * 20 18 15 23 23 H 1.48502 * 109.47417 * 89.99689 * 22 20 18 24 24 H 1.48494 * 109.47535 * 209.99802 * 22 20 18 25 25 H 1.48504 * 109.47240 * 329.99873 * 22 20 18 26 26 H 1.08005 * 119.99605 * 179.97438 * 1 2 3 27 27 H 1.07993 * 119.99989 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46904 * 269.99620 * 3 2 1 29 29 H 1.08995 * 109.47277 * 29.99663 * 3 2 1 30 30 H 1.08996 * 109.47561 * 150.00199 * 3 2 1 31 31 H 1.08996 * 110.37696 * 159.34250 * 7 6 4 32 32 H 1.09002 * 110.37347 * 281.56856 * 7 6 4 33 33 H 1.09000 * 110.61457 * 217.51047 * 8 7 6 34 34 H 1.08999 * 110.55754 * 94.70081 * 8 7 6 35 35 H 1.09003 * 109.46866 * 296.90182 * 11 9 4 36 36 H 1.08993 * 109.47133 * 56.90648 * 11 9 4 37 37 H 0.97008 * 120.00335 * 359.97438 * 12 11 9 38 38 H 1.08994 * 109.47311 * 59.99852 * 17 15 13 39 39 H 1.09003 * 109.47055 * 180.02562 * 17 15 13 40 40 H 1.08998 * 109.47207 * 299.99447 * 17 15 13 41 41 H 0.96998 * 119.99931 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 1 1.3763 -2.1410 0.1310 6 8 3.0626 -1.3082 1.0436 7 6 4.0142 -2.3231 0.6558 8 6 4.1756 -2.1521 -0.8741 9 6 2.8625 -1.4653 -1.3118 10 1 3.0701 -0.4909 -1.7540 11 6 2.0987 -2.3492 -2.2999 12 7 2.8403 -2.4257 -3.5609 13 6 2.3543 -3.1540 -4.5855 14 8 1.3031 -3.7465 -4.4633 15 6 3.1169 -3.2322 -5.8829 16 1 4.1025 -3.6602 -5.6998 17 6 3.2717 -1.8274 -6.4689 18 6 2.3647 -4.1028 -6.8561 19 1 1.4281 -4.5547 -6.5641 20 6 2.8724 -4.3234 -8.1188 21 7 4.0130 -3.7736 -8.4742 22 14 1.9403 -5.4031 -9.3249 23 1 1.0043 -4.5661 -10.1177 24 1 2.9026 -6.0702 -10.2382 25 1 1.1728 -6.4317 -8.5776 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 2.2452 1.6197 -1.0277 29 1 1.4744 2.0648 0.5137 30 1 3.0159 1.1749 0.5138 31 1 4.9676 -2.1614 1.1587 32 1 3.6270 -3.3151 0.8884 33 1 4.2794 -3.1223 -1.3599 34 1 5.0323 -1.5172 -1.1000 35 1 1.9883 -3.3499 -1.8820 36 1 1.1132 -1.9213 -2.4833 37 1 3.6809 -1.9515 -3.6588 38 1 3.8160 -1.1980 -5.7649 39 1 3.8229 -1.8840 -7.4076 40 1 2.2861 -1.3995 -6.6521 41 1 4.3701 -3.9284 -9.3627 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597610082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:18 Heat of formation + Delta-G solvation = -101.496874 kcal Electronic energy + Delta-G solvation = -20662.693590 eV Core-core repulsion = 17541.588675 eV Total energy + Delta-G solvation = -3121.104914 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.14586 -40.22956 -36.24287 -36.01011 -35.74537 -33.23431 -32.09344 -29.94858 -28.20720 -27.23028 -26.69942 -24.10452 -23.87024 -21.58573 -21.09106 -19.75410 -18.39074 -17.91701 -17.17093 -16.93311 -16.73944 -16.23840 -16.18826 -15.97156 -14.98543 -14.82758 -14.55861 -14.37421 -14.28317 -14.00452 -13.76806 -13.42781 -12.97712 -12.89381 -12.73188 -12.58663 -12.55036 -12.43093 -12.20924 -12.04753 -11.99336 -11.87504 -11.59050 -11.03672 -10.81693 -10.60940 -10.32760 -10.02192 -9.98755 -8.14896 -6.25078 1.17226 1.40808 1.41637 1.53355 1.93033 2.32724 2.51311 2.98275 3.14778 3.49886 3.68934 3.75688 4.01213 4.10019 4.17607 4.28086 4.34239 4.38273 4.58950 4.69802 4.75065 4.76202 4.83101 4.85923 4.92821 4.95931 4.99456 5.03276 5.07727 5.12104 5.18363 5.50351 5.56872 5.62445 5.75535 5.76388 5.92005 5.94842 6.22205 6.73764 6.86493 7.40360 7.54380 8.90842 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.031704 B = 0.003885 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.961020 B = 7205.718486 C = 7388.955487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.136 4.136 3 C -0.113 4.113 4 C 0.118 3.882 5 H 0.072 0.928 6 O -0.378 6.378 7 C 0.042 3.958 8 C -0.151 4.151 9 C -0.114 4.114 10 H 0.099 0.901 11 C 0.133 3.867 12 N -0.722 5.722 13 C 0.521 3.479 14 O -0.589 6.589 15 C 0.024 3.976 16 H 0.043 0.957 17 C -0.119 4.119 18 C -0.530 4.530 19 H 0.047 0.953 20 C 0.020 3.980 21 N -0.910 5.910 22 Si 0.954 3.046 23 H -0.274 1.274 24 H -0.274 1.274 25 H -0.279 1.279 26 H 0.099 0.901 27 H 0.118 0.882 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.410 0.590 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.021 0.979 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 9.172 17.613 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.136 4.136 3 C -0.170 4.170 4 C 0.060 3.940 5 H 0.090 0.910 6 O -0.298 6.298 7 C -0.035 4.035 8 C -0.189 4.189 9 C -0.133 4.133 10 H 0.118 0.882 11 C 0.009 3.991 12 N -0.375 5.375 13 C 0.310 3.690 14 O -0.469 6.469 15 C 0.003 3.997 16 H 0.061 0.939 17 C -0.177 4.177 18 C -0.568 4.568 19 H 0.065 0.935 20 C -0.179 4.179 21 N -0.550 5.550 22 Si 0.780 3.220 23 H -0.200 1.200 24 H -0.199 1.199 25 H -0.204 1.204 26 H 0.117 0.883 27 H 0.136 0.864 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.129 0.871 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.247 0.753 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.040 0.960 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.869 8.895 17.759 19.882 hybrid contribution -0.226 -0.747 -1.055 1.312 sum 0.643 8.149 16.705 18.597 Atomic orbital electron populations 1.23937 0.94955 1.03096 0.99848 1.21663 0.95357 0.95184 1.01382 1.20770 1.00497 0.93352 1.02361 1.21906 0.90345 0.95809 0.85902 0.91010 1.89138 1.37471 1.58379 1.44783 1.23617 0.93899 0.91739 0.94207 1.23126 0.97365 1.02027 0.96345 1.22680 0.95517 1.00088 0.95014 0.88245 1.21221 0.95094 0.99160 0.83578 1.45947 1.26562 1.52025 1.13000 1.21559 0.85135 0.76310 0.86017 1.90510 1.25697 1.47043 1.83625 1.18813 0.95591 0.96471 0.88870 0.93928 1.21554 0.99501 0.94283 1.02371 1.21290 1.07409 1.29813 0.98279 0.93460 1.25576 0.95865 0.97082 0.99359 1.69942 1.19615 1.44778 1.20639 0.85615 0.78604 0.79071 0.78713 1.20011 1.19931 1.20430 0.88297 0.86369 0.91101 0.90872 0.91541 0.87064 0.91904 0.90310 0.88699 0.92702 0.92912 0.75345 0.92859 0.91097 0.95969 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.33 13.91 67.78 0.94 -2.39 16 2 C -0.14 -2.68 5.13 -16.48 -0.08 -2.76 16 3 C -0.11 -1.89 9.45 71.24 0.67 -1.22 16 4 C 0.12 2.49 3.04 30.35 0.09 2.58 16 5 H 0.07 1.56 7.59 -2.39 -0.02 1.54 16 6 O -0.38 -8.19 10.77 -148.98 -1.60 -9.79 16 7 C 0.04 0.71 7.64 72.59 0.55 1.26 16 8 C -0.15 -2.67 6.53 31.72 0.21 -2.46 16 9 C -0.11 -2.36 2.65 -9.78 -0.03 -2.39 16 10 H 0.10 1.95 7.40 -2.39 -0.02 1.93 16 11 C 0.13 3.75 4.77 86.38 0.41 4.16 16 12 N -0.72 -23.71 5.29 -463.07 -2.45 -26.16 16 13 C 0.52 23.70 7.15 87.66 0.63 24.33 16 14 O -0.59 -31.55 15.46 -3.04 -0.05 -31.59 16 15 C 0.02 1.18 2.64 -12.29 -0.03 1.15 16 16 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 17 C -0.12 -5.36 8.87 71.98 0.64 -4.72 16 18 C -0.53 -30.72 8.37 25.60 0.21 -30.50 16 19 H 0.05 2.95 6.75 -2.91 -0.02 2.93 16 20 C 0.02 1.14 5.30 84.65 0.45 1.59 16 21 N -0.91 -50.85 11.32 21.45 0.24 -50.60 16 22 Si 0.95 44.92 29.54 68.60 2.03 46.94 16 23 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 25 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 26 H 0.10 1.80 7.88 -2.91 -0.02 1.78 16 27 H 0.12 1.78 8.04 -2.91 -0.02 1.76 16 28 H 0.07 1.11 8.11 -2.39 -0.02 1.09 16 29 H 0.07 1.04 8.06 -2.39 -0.02 1.02 16 30 H 0.07 1.16 7.61 -2.39 -0.02 1.14 16 31 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.53 7.71 -2.39 -0.02 1.51 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.41 11.15 7.80 -92.70 -0.72 10.42 16 38 H 0.05 1.90 7.56 -2.39 -0.02 1.88 16 39 H 0.07 3.54 6.07 -2.39 -0.01 3.52 16 40 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -67.80 335.04 3.12 -64.69 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.28 Total: 17.89 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 4.67 Total: -11.37 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -2.21 Total: -76.77 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -1.65 Total: -41.38 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -67.80 3.12 -64.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597610082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.810 kcal (2) G-P(sol) polarization free energy of solvation -67.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds