Wall clock time and date at job start Mon Mar 30 2020 05:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47286 * 2 1 4 4 C 1.50699 * 109.47178 * 239.99634 * 2 1 3 5 5 H 1.07995 * 119.99896 * 245.28902 * 4 2 1 6 6 C 1.37870 * 120.00025 * 65.55654 * 4 2 1 7 7 N 1.31515 * 120.00565 * 204.79462 * 6 4 2 8 8 Si 1.86806 * 119.99982 * 24.80061 * 6 4 2 9 9 H 1.48497 * 109.47164 * 85.71217 * 8 6 4 10 10 H 1.48499 * 109.47278 * 205.71259 * 8 6 4 11 11 H 1.48499 * 109.46811 * 325.71299 * 8 6 4 12 12 C 1.50699 * 109.46935 * 119.99664 * 2 1 3 13 13 O 1.21288 * 120.00270 * 79.67670 * 12 2 1 14 14 N 1.34777 * 120.00069 * 259.67846 * 12 2 1 15 15 C 1.47592 * 125.76807 * 4.71716 * 14 12 2 16 16 C 1.55180 * 104.73964 * 155.90991 * 15 14 12 17 17 C 1.55283 * 101.54843 * 36.99939 * 16 15 14 18 18 H 1.09000 * 110.75179 * 83.09963 * 17 16 15 19 19 O 1.42901 * 110.90966 * 206.38266 * 17 16 15 20 20 C 1.46437 * 125.77085 * 185.02715 * 14 12 2 21 21 C 1.53730 * 110.62618 * 60.69658 * 20 14 12 22 22 C 1.55017 * 104.06752 * 215.81315 * 21 20 14 23 23 C 1.54935 * 102.81347 * 37.48349 * 22 21 20 24 24 C 1.53341 * 110.83473 * 301.98387 * 20 14 12 25 25 H 1.08997 * 109.47319 * 183.80534 * 1 2 3 26 26 H 1.09006 * 109.47119 * 303.80587 * 1 2 3 27 27 H 1.09001 * 109.47269 * 63.80287 * 1 2 3 28 28 H 0.96993 * 120.00651 * 180.02562 * 7 6 4 29 29 H 1.09000 * 110.36332 * 274.84392 * 15 14 12 30 30 H 1.09002 * 110.36417 * 37.15699 * 15 14 12 31 31 H 1.08995 * 111.18039 * 278.87714 * 16 15 14 32 32 H 1.08998 * 110.92730 * 155.00814 * 16 15 14 33 33 H 0.96701 * 113.99704 * 293.45571 * 19 17 16 34 34 H 1.08998 * 110.51365 * 334.45906 * 21 20 14 35 35 H 1.08997 * 110.51349 * 97.17041 * 21 20 14 36 36 H 1.08989 * 110.74746 * 279.14928 * 22 21 20 37 37 H 1.09003 * 110.89658 * 155.88292 * 22 21 20 38 38 H 1.09004 * 110.48362 * 203.67112 * 23 22 21 39 39 H 1.09002 * 110.59890 * 81.09376 * 23 22 21 40 40 H 1.09004 * 110.07607 * 239.86601 * 24 20 14 41 41 H 1.09000 * 110.07292 * 1.40540 * 24 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5810 -1.6356 -1.1335 6 6 1.7964 -0.1765 -2.4794 7 7 1.7740 -0.9595 -3.5359 8 14 1.5085 1.6592 -2.6712 9 1 2.8146 2.3550 -2.7938 10 1 0.6986 1.9085 -3.8907 11 1 0.7834 2.1734 -1.4817 12 6 2.0323 -0.7103 1.2305 13 8 2.0570 -1.9225 1.2634 14 7 2.4541 0.0014 2.2945 15 6 2.3890 1.4695 2.4310 16 6 2.3876 1.7240 3.9618 17 6 3.3570 0.6187 4.4616 18 1 4.3936 0.9419 4.3656 19 8 3.0646 0.2567 5.8128 20 6 3.0602 -0.5508 3.5078 21 6 4.3596 -1.3002 3.1713 22 6 4.3721 -2.4950 4.1589 23 6 2.8783 -2.9009 4.2261 24 6 2.1181 -1.5577 4.1785 25 1 -0.3634 -1.0254 0.0682 26 1 -0.3634 0.5718 0.8540 27 1 -0.3634 0.4537 -0.9221 28 1 1.6083 -0.5838 -4.4146 29 1 3.2605 1.9325 1.9680 30 1 1.4721 1.8519 1.9825 31 1 1.3912 1.5890 4.3825 32 1 2.7751 2.7165 4.1919 33 1 3.2348 0.9603 6.4540 34 1 4.3393 -1.6563 2.1413 35 1 5.2247 -0.6584 3.3375 36 1 4.7315 -2.1820 5.1391 37 1 4.9776 -3.3140 3.7707 38 1 2.6672 -3.4259 5.1577 39 1 2.6107 -3.5212 3.3707 40 1 1.8767 -1.2285 5.1892 41 1 1.2058 -1.6648 3.5916 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597694919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:48 Heat of formation + Delta-G solvation = -84.790350 kcal Electronic energy + Delta-G solvation = -22159.192309 eV Core-core repulsion = 19038.811844 eV Total energy + Delta-G solvation = -3120.380465 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.55731 -37.81286 -35.95520 -35.10018 -33.61281 -31.26693 -30.21487 -28.57996 -28.31108 -25.18906 -24.04960 -22.77027 -21.99369 -20.55486 -19.75469 -17.66661 -17.29722 -16.79906 -16.17183 -15.49230 -15.27977 -14.60656 -14.38278 -14.20716 -13.76522 -13.48214 -13.15023 -12.72127 -12.62394 -12.35552 -12.19085 -11.87414 -11.70128 -11.36910 -11.10170 -11.06729 -10.93246 -10.81090 -10.73757 -10.56457 -10.44465 -10.28791 -10.10435 -9.87847 -9.78029 -9.39812 -8.56376 -8.30990 -8.07939 -6.16209 -4.04104 3.23866 3.32839 3.34522 3.41636 3.62898 4.07608 4.38618 4.50114 4.59413 4.82602 5.05335 5.08813 5.11697 5.30936 5.34568 5.47752 5.65127 5.69996 5.80339 5.85515 5.93182 5.97995 6.06433 6.11753 6.14141 6.20860 6.28479 6.35792 6.46668 6.52457 6.60063 6.65061 6.78374 6.87081 7.11114 7.27816 7.51250 7.63339 8.15540 8.48894 9.04643 9.15414 9.50684 10.96580 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026271 B = 0.006568 C = 0.005829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.543012 B = 4261.843753 C = 4802.707166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.011 3.989 3 H 0.035 0.965 4 C -0.517 4.517 5 H 0.082 0.918 6 C 0.084 3.916 7 N -0.874 5.874 8 Si 0.856 3.144 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.261 1.261 12 C 0.550 3.450 13 O -0.526 6.526 14 N -0.623 5.623 15 C 0.102 3.898 16 C -0.166 4.166 17 C 0.103 3.897 18 H 0.072 0.928 19 O -0.549 6.549 20 C 0.169 3.831 21 C -0.126 4.126 22 C -0.115 4.115 23 C -0.115 4.115 24 C -0.117 4.117 25 H 0.055 0.945 26 H 0.023 0.977 27 H 0.054 0.946 28 H 0.265 0.735 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.374 0.626 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.910 7.065 17.813 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.011 4.011 3 H 0.053 0.947 4 C -0.554 4.554 5 H 0.100 0.900 6 C -0.120 4.120 7 N -0.510 5.510 8 Si 0.682 3.318 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.185 1.185 12 C 0.341 3.659 13 O -0.400 6.400 14 N -0.360 5.360 15 C -0.021 4.021 16 C -0.204 4.204 17 C 0.044 3.956 18 H 0.090 0.910 19 O -0.355 6.355 20 C 0.084 3.916 21 C -0.164 4.164 22 C -0.153 4.153 23 C -0.153 4.153 24 C -0.155 4.155 25 H 0.074 0.926 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.221 0.779 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.682 5.745 17.221 18.351 hybrid contribution 0.077 1.771 -0.142 1.779 sum 2.759 7.517 17.079 18.863 Atomic orbital electron populations 1.21971 0.96571 1.01077 0.99294 1.19161 0.93875 0.96360 0.91731 0.94668 1.20637 1.37595 1.09690 0.87521 0.90013 1.24856 0.94073 0.97364 0.95724 1.70084 1.46646 1.34785 0.99494 0.87221 0.78634 0.87909 0.78079 1.20244 1.21231 1.18491 1.21103 0.75091 0.87579 0.82113 1.90579 1.53911 1.14197 1.81319 1.48779 1.63618 1.06615 1.16997 1.22231 1.02432 0.82429 0.95030 1.23577 1.01402 0.99182 0.96279 1.22697 0.97106 0.93412 0.82412 0.91005 1.86538 1.89828 1.42977 1.16114 1.20911 0.93601 0.92548 0.84570 1.22689 0.95491 0.96959 1.01291 1.22378 0.97010 0.97381 0.98563 1.22256 0.94643 0.97294 1.01117 1.22232 0.98287 0.94029 1.00920 0.92614 0.95790 0.92687 0.92532 0.91465 0.90238 0.89802 0.90080 0.77853 0.89982 0.92157 0.91871 0.91995 0.92619 0.91030 0.89923 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.73 37.16 0.32 -2.59 16 2 C 0.01 0.25 1.75 -92.92 -0.16 0.09 16 3 H 0.04 0.80 5.27 -51.93 -0.27 0.52 16 4 C -0.52 -14.89 8.68 -34.44 -0.30 -15.18 16 5 H 0.08 2.67 7.57 -52.49 -0.40 2.27 16 6 C 0.08 2.39 5.20 -17.82 -0.09 2.30 16 7 N -0.87 -26.58 13.96 55.43 0.77 -25.80 16 8 Si 0.86 20.47 26.12 -169.99 -4.44 16.03 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.26 -5.77 6.13 56.52 0.35 -5.42 16 12 C 0.55 12.46 5.84 -10.99 -0.06 12.39 16 13 O -0.53 -13.50 14.58 5.55 0.08 -13.42 16 14 N -0.62 -11.21 2.82 -155.61 -0.44 -11.65 16 15 C 0.10 1.44 6.18 -2.29 -0.01 1.43 16 16 C -0.17 -1.75 6.83 -24.37 -0.17 -1.92 16 17 C 0.10 1.19 3.73 -25.10 -0.09 1.10 16 18 H 0.07 0.74 7.40 -51.93 -0.38 0.36 16 19 O -0.55 -5.62 11.13 -35.23 -0.39 -6.01 16 20 C 0.17 2.65 0.73 -130.88 -0.10 2.55 16 21 C -0.13 -2.01 5.88 -25.29 -0.15 -2.16 16 22 C -0.12 -1.65 6.91 -24.64 -0.17 -1.82 16 23 C -0.12 -1.81 6.84 -24.97 -0.17 -1.98 16 24 C -0.12 -1.90 5.38 -25.81 -0.14 -2.03 16 25 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 1.23 5.92 -51.93 -0.31 0.92 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.12 7.58 -51.93 -0.39 0.72 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.37 2.03 9.12 45.56 0.42 2.44 16 34 H 0.08 1.61 6.88 -51.93 -0.36 1.25 16 35 H 0.06 0.83 7.37 -51.93 -0.38 0.45 16 36 H 0.06 0.80 8.14 -51.94 -0.42 0.38 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.29 8.07 -51.93 -0.42 0.88 16 40 H 0.08 1.25 5.97 -51.93 -0.31 0.94 16 41 H 0.06 1.24 7.11 -51.93 -0.37 0.87 16 LS Contribution 313.36 15.07 4.72 4.72 Total: -1.00 -33.25 313.36 -6.74 -39.99 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.75 Total: 3.97 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -1.29 Total: -7.83 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.33 Total: -37.45 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.31 Total: -19.43 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.44 Total: 16.03 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.25 -6.74 -39.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597694919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.803 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds