Wall clock time and date at job start Mon Mar 30 2020 05:18:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09001 * 109.47286 * 2 1
4 4 C 1.50699 * 109.47178 * 239.99634 * 2 1 3
5 5 H 1.07995 * 119.99896 * 245.28902 * 4 2 1
6 6 C 1.37870 * 120.00025 * 65.55654 * 4 2 1
7 7 N 1.31515 * 120.00565 * 204.79462 * 6 4 2
8 8 Si 1.86806 * 119.99982 * 24.80061 * 6 4 2
9 9 H 1.48497 * 109.47164 * 85.71217 * 8 6 4
10 10 H 1.48499 * 109.47278 * 205.71259 * 8 6 4
11 11 H 1.48499 * 109.46811 * 325.71299 * 8 6 4
12 12 C 1.50699 * 109.46935 * 119.99664 * 2 1 3
13 13 O 1.21288 * 120.00270 * 79.67670 * 12 2 1
14 14 N 1.34777 * 120.00069 * 259.67846 * 12 2 1
15 15 C 1.47592 * 125.76807 * 4.71716 * 14 12 2
16 16 C 1.55180 * 104.73964 * 155.90991 * 15 14 12
17 17 C 1.55283 * 101.54843 * 36.99939 * 16 15 14
18 18 H 1.09000 * 110.75179 * 83.09963 * 17 16 15
19 19 O 1.42901 * 110.90966 * 206.38266 * 17 16 15
20 20 C 1.46437 * 125.77085 * 185.02715 * 14 12 2
21 21 C 1.53730 * 110.62618 * 60.69658 * 20 14 12
22 22 C 1.55017 * 104.06752 * 215.81315 * 21 20 14
23 23 C 1.54935 * 102.81347 * 37.48349 * 22 21 20
24 24 C 1.53341 * 110.83473 * 301.98387 * 20 14 12
25 25 H 1.08997 * 109.47319 * 183.80534 * 1 2 3
26 26 H 1.09006 * 109.47119 * 303.80587 * 1 2 3
27 27 H 1.09001 * 109.47269 * 63.80287 * 1 2 3
28 28 H 0.96993 * 120.00651 * 180.02562 * 7 6 4
29 29 H 1.09000 * 110.36332 * 274.84392 * 15 14 12
30 30 H 1.09002 * 110.36417 * 37.15699 * 15 14 12
31 31 H 1.08995 * 111.18039 * 278.87714 * 16 15 14
32 32 H 1.08998 * 110.92730 * 155.00814 * 16 15 14
33 33 H 0.96701 * 113.99704 * 293.45571 * 19 17 16
34 34 H 1.08998 * 110.51365 * 334.45906 * 21 20 14
35 35 H 1.08997 * 110.51349 * 97.17041 * 21 20 14
36 36 H 1.08989 * 110.74746 * 279.14928 * 22 21 20
37 37 H 1.09003 * 110.89658 * 155.88292 * 22 21 20
38 38 H 1.09004 * 110.48362 * 203.67112 * 23 22 21
39 39 H 1.09002 * 110.59890 * 81.09376 * 23 22 21
40 40 H 1.09004 * 110.07607 * 239.86601 * 24 20 14
41 41 H 1.09000 * 110.07292 * 1.40540 * 24 20 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7105 -1.2304
5 1 2.5810 -1.6356 -1.1335
6 6 1.7964 -0.1765 -2.4794
7 7 1.7740 -0.9595 -3.5359
8 14 1.5085 1.6592 -2.6712
9 1 2.8146 2.3550 -2.7938
10 1 0.6986 1.9085 -3.8907
11 1 0.7834 2.1734 -1.4817
12 6 2.0323 -0.7103 1.2305
13 8 2.0570 -1.9225 1.2634
14 7 2.4541 0.0014 2.2945
15 6 2.3890 1.4695 2.4310
16 6 2.3876 1.7240 3.9618
17 6 3.3570 0.6187 4.4616
18 1 4.3936 0.9419 4.3656
19 8 3.0646 0.2567 5.8128
20 6 3.0602 -0.5508 3.5078
21 6 4.3596 -1.3002 3.1713
22 6 4.3721 -2.4950 4.1589
23 6 2.8783 -2.9009 4.2261
24 6 2.1181 -1.5577 4.1785
25 1 -0.3634 -1.0254 0.0682
26 1 -0.3634 0.5718 0.8540
27 1 -0.3634 0.4537 -0.9221
28 1 1.6083 -0.5838 -4.4146
29 1 3.2605 1.9325 1.9680
30 1 1.4721 1.8519 1.9825
31 1 1.3912 1.5890 4.3825
32 1 2.7751 2.7165 4.1919
33 1 3.2348 0.9603 6.4540
34 1 4.3393 -1.6563 2.1413
35 1 5.2247 -0.6584 3.3375
36 1 4.7315 -2.1820 5.1391
37 1 4.9776 -3.3140 3.7707
38 1 2.6672 -3.4259 5.1577
39 1 2.6107 -3.5212 3.3707
40 1 1.8767 -1.2285 5.1892
41 1 1.2058 -1.6648 3.5916
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597694919.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:18:48
Heat of formation + Delta-G solvation = -84.790350 kcal
Electronic energy + Delta-G solvation = -22159.192309 eV
Core-core repulsion = 19038.811844 eV
Total energy + Delta-G solvation = -3120.380465 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 267.162 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-40.55731 -37.81286 -35.95520 -35.10018 -33.61281 -31.26693 -30.21487 -28.57996
-28.31108 -25.18906 -24.04960 -22.77027 -21.99369 -20.55486 -19.75469 -17.66661
-17.29722 -16.79906 -16.17183 -15.49230 -15.27977 -14.60656 -14.38278 -14.20716
-13.76522 -13.48214 -13.15023 -12.72127 -12.62394 -12.35552 -12.19085 -11.87414
-11.70128 -11.36910 -11.10170 -11.06729 -10.93246 -10.81090 -10.73757 -10.56457
-10.44465 -10.28791 -10.10435 -9.87847 -9.78029 -9.39812 -8.56376 -8.30990
-8.07939 -6.16209 -4.04104 3.23866 3.32839 3.34522 3.41636 3.62898
4.07608 4.38618 4.50114 4.59413 4.82602 5.05335 5.08813 5.11697
5.30936 5.34568 5.47752 5.65127 5.69996 5.80339 5.85515 5.93182
5.97995 6.06433 6.11753 6.14141 6.20860 6.28479 6.35792 6.46668
6.52457 6.60063 6.65061 6.78374 6.87081 7.11114 7.27816 7.51250
7.63339 8.15540 8.48894 9.04643 9.15414 9.50684 10.96580
Molecular weight = 267.16amu
Principal moments of inertia in cm(-1)
A = 0.026271 B = 0.006568 C = 0.005829
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1065.543012 B = 4261.843753 C = 4802.707166
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C 0.011 3.989
3 H 0.035 0.965
4 C -0.517 4.517
5 H 0.082 0.918
6 C 0.084 3.916
7 N -0.874 5.874
8 Si 0.856 3.144
9 H -0.277 1.277
10 H -0.286 1.286
11 H -0.261 1.261
12 C 0.550 3.450
13 O -0.526 6.526
14 N -0.623 5.623
15 C 0.102 3.898
16 C -0.166 4.166
17 C 0.103 3.897
18 H 0.072 0.928
19 O -0.549 6.549
20 C 0.169 3.831
21 C -0.126 4.126
22 C -0.115 4.115
23 C -0.115 4.115
24 C -0.117 4.117
25 H 0.055 0.945
26 H 0.023 0.977
27 H 0.054 0.946
28 H 0.265 0.735
29 H 0.067 0.933
30 H 0.079 0.921
31 H 0.083 0.917
32 H 0.081 0.919
33 H 0.374 0.626
34 H 0.082 0.918
35 H 0.060 0.940
36 H 0.063 0.937
37 H 0.061 0.939
38 H 0.055 0.945
39 H 0.071 0.929
40 H 0.082 0.918
41 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.910 7.065 17.813 19.382
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.011 4.011
3 H 0.053 0.947
4 C -0.554 4.554
5 H 0.100 0.900
6 C -0.120 4.120
7 N -0.510 5.510
8 Si 0.682 3.318
9 H -0.202 1.202
10 H -0.212 1.212
11 H -0.185 1.185
12 C 0.341 3.659
13 O -0.400 6.400
14 N -0.360 5.360
15 C -0.021 4.021
16 C -0.204 4.204
17 C 0.044 3.956
18 H 0.090 0.910
19 O -0.355 6.355
20 C 0.084 3.916
21 C -0.164 4.164
22 C -0.153 4.153
23 C -0.153 4.153
24 C -0.155 4.155
25 H 0.074 0.926
26 H 0.042 0.958
27 H 0.073 0.927
28 H 0.075 0.925
29 H 0.085 0.915
30 H 0.098 0.902
31 H 0.102 0.898
32 H 0.099 0.901
33 H 0.221 0.779
34 H 0.100 0.900
35 H 0.078 0.922
36 H 0.081 0.919
37 H 0.080 0.920
38 H 0.074 0.926
39 H 0.090 0.910
40 H 0.101 0.899
41 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 2.682 5.745 17.221 18.351
hybrid contribution 0.077 1.771 -0.142 1.779
sum 2.759 7.517 17.079 18.863
Atomic orbital electron populations
1.21971 0.96571 1.01077 0.99294 1.19161 0.93875 0.96360 0.91731
0.94668 1.20637 1.37595 1.09690 0.87521 0.90013 1.24856 0.94073
0.97364 0.95724 1.70084 1.46646 1.34785 0.99494 0.87221 0.78634
0.87909 0.78079 1.20244 1.21231 1.18491 1.21103 0.75091 0.87579
0.82113 1.90579 1.53911 1.14197 1.81319 1.48779 1.63618 1.06615
1.16997 1.22231 1.02432 0.82429 0.95030 1.23577 1.01402 0.99182
0.96279 1.22697 0.97106 0.93412 0.82412 0.91005 1.86538 1.89828
1.42977 1.16114 1.20911 0.93601 0.92548 0.84570 1.22689 0.95491
0.96959 1.01291 1.22378 0.97010 0.97381 0.98563 1.22256 0.94643
0.97294 1.01117 1.22232 0.98287 0.94029 1.00920 0.92614 0.95790
0.92687 0.92532 0.91465 0.90238 0.89802 0.90080 0.77853 0.89982
0.92157 0.91871 0.91995 0.92619 0.91030 0.89923 0.91641
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.91 8.73 37.16 0.32 -2.59 16
2 C 0.01 0.25 1.75 -92.92 -0.16 0.09 16
3 H 0.04 0.80 5.27 -51.93 -0.27 0.52 16
4 C -0.52 -14.89 8.68 -34.44 -0.30 -15.18 16
5 H 0.08 2.67 7.57 -52.49 -0.40 2.27 16
6 C 0.08 2.39 5.20 -17.82 -0.09 2.30 16
7 N -0.87 -26.58 13.96 55.43 0.77 -25.80 16
8 Si 0.86 20.47 26.12 -169.99 -4.44 16.03 16
9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16
11 H -0.26 -5.77 6.13 56.52 0.35 -5.42 16
12 C 0.55 12.46 5.84 -10.99 -0.06 12.39 16
13 O -0.53 -13.50 14.58 5.55 0.08 -13.42 16
14 N -0.62 -11.21 2.82 -155.61 -0.44 -11.65 16
15 C 0.10 1.44 6.18 -2.29 -0.01 1.43 16
16 C -0.17 -1.75 6.83 -24.37 -0.17 -1.92 16
17 C 0.10 1.19 3.73 -25.10 -0.09 1.10 16
18 H 0.07 0.74 7.40 -51.93 -0.38 0.36 16
19 O -0.55 -5.62 11.13 -35.23 -0.39 -6.01 16
20 C 0.17 2.65 0.73 -130.88 -0.10 2.55 16
21 C -0.13 -2.01 5.88 -25.29 -0.15 -2.16 16
22 C -0.12 -1.65 6.91 -24.64 -0.17 -1.82 16
23 C -0.12 -1.81 6.84 -24.97 -0.17 -1.98 16
24 C -0.12 -1.90 5.38 -25.81 -0.14 -2.03 16
25 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16
26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
27 H 0.05 1.23 5.92 -51.93 -0.31 0.92 16
28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16
29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
30 H 0.08 1.12 7.58 -51.93 -0.39 0.72 16
31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
33 H 0.37 2.03 9.12 45.56 0.42 2.44 16
34 H 0.08 1.61 6.88 -51.93 -0.36 1.25 16
35 H 0.06 0.83 7.37 -51.93 -0.38 0.45 16
36 H 0.06 0.80 8.14 -51.94 -0.42 0.38 16
37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
39 H 0.07 1.29 8.07 -51.93 -0.42 0.88 16
40 H 0.08 1.25 5.97 -51.93 -0.31 0.94 16
41 H 0.06 1.24 7.11 -51.93 -0.37 0.87 16
LS Contribution 313.36 15.07 4.72 4.72
Total: -1.00 -33.25 313.36 -6.74 -39.99
By element:
Atomic # 1 Polarization: 9.72 SS G_CDS: -5.75 Total: 3.97 kcal
Atomic # 6 Polarization: -6.53 SS G_CDS: -1.29 Total: -7.83 kcal
Atomic # 7 Polarization: -37.78 SS G_CDS: 0.33 Total: -37.45 kcal
Atomic # 8 Polarization: -19.12 SS G_CDS: -0.31 Total: -19.43 kcal
Atomic # 14 Polarization: 20.47 SS G_CDS: -4.44 Total: 16.03 kcal
Total LS contribution 4.72 Total: 4.72 kcal
Total: -33.25 -6.74 -39.99 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597694919.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.803 kcal
(2) G-P(sol) polarization free energy of solvation -33.248 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.051 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.790 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds