Wall clock time and date at job start Mon Mar 30 2020 05:18:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09001 * 109.47286 * 2 1
4 4 C 1.50699 * 109.47178 * 239.99634 * 2 1 3
5 5 H 1.07995 * 119.99896 * 245.28902 * 4 2 1
6 6 C 1.37870 * 120.00025 * 65.55654 * 4 2 1
7 7 N 1.31515 * 120.00565 * 204.79462 * 6 4 2
8 8 Si 1.86806 * 119.99982 * 24.80061 * 6 4 2
9 9 H 1.48497 * 109.47164 * 85.71217 * 8 6 4
10 10 H 1.48499 * 109.47278 * 205.71259 * 8 6 4
11 11 H 1.48499 * 109.46811 * 325.71299 * 8 6 4
12 12 C 1.50699 * 109.46935 * 119.99664 * 2 1 3
13 13 O 1.21288 * 120.00270 * 79.67670 * 12 2 1
14 14 N 1.34777 * 120.00069 * 259.67846 * 12 2 1
15 15 C 1.47592 * 125.76807 * 4.71716 * 14 12 2
16 16 C 1.55180 * 104.73964 * 155.90991 * 15 14 12
17 17 C 1.55283 * 101.54843 * 36.99939 * 16 15 14
18 18 H 1.09000 * 110.75179 * 83.09963 * 17 16 15
19 19 O 1.42901 * 110.90966 * 206.38266 * 17 16 15
20 20 C 1.46437 * 125.77085 * 185.02715 * 14 12 2
21 21 C 1.53730 * 110.62618 * 60.69658 * 20 14 12
22 22 C 1.55017 * 104.06752 * 215.81315 * 21 20 14
23 23 C 1.54935 * 102.81347 * 37.48349 * 22 21 20
24 24 C 1.53341 * 110.83473 * 301.98387 * 20 14 12
25 25 H 1.08997 * 109.47319 * 183.80534 * 1 2 3
26 26 H 1.09006 * 109.47119 * 303.80587 * 1 2 3
27 27 H 1.09001 * 109.47269 * 63.80287 * 1 2 3
28 28 H 0.96993 * 120.00651 * 180.02562 * 7 6 4
29 29 H 1.09000 * 110.36332 * 274.84392 * 15 14 12
30 30 H 1.09002 * 110.36417 * 37.15699 * 15 14 12
31 31 H 1.08995 * 111.18039 * 278.87714 * 16 15 14
32 32 H 1.08998 * 110.92730 * 155.00814 * 16 15 14
33 33 H 0.96701 * 113.99704 * 293.45571 * 19 17 16
34 34 H 1.08998 * 110.51365 * 334.45906 * 21 20 14
35 35 H 1.08997 * 110.51349 * 97.17041 * 21 20 14
36 36 H 1.08989 * 110.74746 * 279.14928 * 22 21 20
37 37 H 1.09003 * 110.89658 * 155.88292 * 22 21 20
38 38 H 1.09004 * 110.48362 * 203.67112 * 23 22 21
39 39 H 1.09002 * 110.59890 * 81.09376 * 23 22 21
40 40 H 1.09004 * 110.07607 * 239.86601 * 24 20 14
41 41 H 1.09000 * 110.07292 * 1.40540 * 24 20 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7105 -1.2304
5 1 2.5810 -1.6356 -1.1335
6 6 1.7964 -0.1765 -2.4794
7 7 1.7740 -0.9595 -3.5359
8 14 1.5085 1.6592 -2.6712
9 1 2.8146 2.3550 -2.7938
10 1 0.6986 1.9085 -3.8907
11 1 0.7834 2.1734 -1.4817
12 6 2.0323 -0.7103 1.2305
13 8 2.0570 -1.9225 1.2634
14 7 2.4541 0.0014 2.2945
15 6 2.3890 1.4695 2.4310
16 6 2.3876 1.7240 3.9618
17 6 3.3570 0.6187 4.4616
18 1 4.3936 0.9419 4.3656
19 8 3.0646 0.2567 5.8128
20 6 3.0602 -0.5508 3.5078
21 6 4.3596 -1.3002 3.1713
22 6 4.3721 -2.4950 4.1589
23 6 2.8783 -2.9009 4.2261
24 6 2.1181 -1.5577 4.1785
25 1 -0.3634 -1.0254 0.0682
26 1 -0.3634 0.5718 0.8540
27 1 -0.3634 0.4537 -0.9221
28 1 1.6083 -0.5838 -4.4146
29 1 3.2605 1.9325 1.9680
30 1 1.4721 1.8519 1.9825
31 1 1.3912 1.5890 4.3825
32 1 2.7751 2.7165 4.1919
33 1 3.2348 0.9603 6.4540
34 1 4.3393 -1.6563 2.1413
35 1 5.2247 -0.6584 3.3375
36 1 4.7315 -2.1820 5.1391
37 1 4.9776 -3.3140 3.7707
38 1 2.6672 -3.4259 5.1577
39 1 2.6107 -3.5212 3.3707
40 1 1.8767 -1.2285 5.1892
41 1 1.2058 -1.6648 3.5916
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597694919.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:18:48
Heat of formation + Delta-G solvation = -110.104270 kcal
Electronic energy + Delta-G solvation = -22160.290003 eV
Core-core repulsion = 19038.811844 eV
Total energy + Delta-G solvation = -3121.478159 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 267.162 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-41.84112 -39.33941 -36.98829 -36.30360 -35.62695 -33.27968 -31.43582 -29.82527
-29.51314 -27.26202 -25.38174 -24.30961 -23.09294 -21.77685 -21.20432 -19.15178
-18.84278 -18.13974 -17.73654 -16.93617 -16.62237 -16.08277 -15.96287 -15.36684
-15.15359 -14.85505 -14.47311 -14.38384 -14.14533 -14.00829 -13.60308 -13.26521
-12.91685 -12.81496 -12.70922 -12.54805 -12.35109 -12.31000 -12.09059 -12.00057
-11.95527 -11.68166 -11.49236 -11.39869 -11.30776 -10.73727 -10.51261 -10.33323
-9.50831 -8.36929 -6.32504 1.35667 1.39379 1.49927 1.88406 2.08335
2.34897 2.94121 3.19009 3.50393 3.59943 3.71224 3.90703 4.08583
4.13589 4.22616 4.39814 4.44068 4.46971 4.53841 4.67098 4.67198
4.72857 4.75033 4.83281 4.85765 4.92481 4.95784 5.00854 5.04661
5.13866 5.22496 5.23523 5.37325 5.42635 5.51170 5.56125 5.77148
6.21767 6.60302 6.76935 7.03364 7.23987 7.48985 8.81060
Molecular weight = 267.16amu
Principal moments of inertia in cm(-1)
A = 0.026271 B = 0.006568 C = 0.005829
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1065.543012 B = 4261.843753 C = 4802.707166
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C 0.011 3.989
3 H 0.061 0.939
4 C -0.536 4.536
5 H 0.015 0.985
6 C 0.025 3.975
7 N -0.930 5.930
8 Si 0.936 3.064
9 H -0.265 1.265
10 H -0.283 1.283
11 H -0.223 1.223
12 C 0.543 3.457
13 O -0.576 6.576
14 N -0.620 5.620
15 C 0.084 3.916
16 C -0.149 4.149
17 C 0.117 3.883
18 H 0.095 0.905
19 O -0.559 6.559
20 C 0.155 3.845
21 C -0.129 4.129
22 C -0.107 4.107
23 C -0.119 4.119
24 C -0.112 4.112
25 H 0.029 0.971
26 H 0.064 0.936
27 H 0.054 0.946
28 H 0.270 0.730
29 H 0.081 0.919
30 H 0.082 0.918
31 H 0.082 0.918
32 H 0.124 0.876
33 H 0.400 0.600
34 H 0.030 0.970
35 H 0.087 0.913
36 H 0.094 0.906
37 H 0.059 0.941
38 H 0.078 0.922
39 H 0.030 0.970
40 H 0.102 0.898
41 H 0.027 0.973
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.195 11.476 20.886 24.044
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.011 4.011
3 H 0.079 0.921
4 C -0.573 4.573
5 H 0.034 0.966
6 C -0.175 4.175
7 N -0.568 5.568
8 Si 0.757 3.243
9 H -0.190 1.190
10 H -0.209 1.209
11 H -0.145 1.145
12 C 0.334 3.666
13 O -0.455 6.455
14 N -0.355 5.355
15 C -0.038 4.038
16 C -0.186 4.186
17 C 0.058 3.942
18 H 0.113 0.887
19 O -0.368 6.368
20 C 0.070 3.930
21 C -0.167 4.167
22 C -0.144 4.144
23 C -0.157 4.157
24 C -0.150 4.150
25 H 0.048 0.952
26 H 0.083 0.917
27 H 0.073 0.927
28 H 0.079 0.921
29 H 0.099 0.901
30 H 0.101 0.899
31 H 0.101 0.899
32 H 0.142 0.858
33 H 0.252 0.748
34 H 0.049 0.951
35 H 0.106 0.894
36 H 0.112 0.888
37 H 0.078 0.922
38 H 0.096 0.904
39 H 0.049 0.951
40 H 0.120 0.880
41 H 0.046 0.954
Dipole moment (debyes) X Y Z Total
from point charges 2.980 10.214 20.367 22.979
hybrid contribution 0.023 0.259 -1.071 1.102
sum 3.003 10.473 19.296 22.159
Atomic orbital electron populations
1.21866 0.95216 1.00309 1.01029 1.19087 0.94885 0.96823 0.90324
0.92121 1.20727 1.37883 1.08189 0.90538 0.96631 1.25902 0.93392
1.03493 0.94670 1.70229 1.48394 1.37758 1.00392 0.85959 0.79454
0.79476 0.79458 1.18987 1.20923 1.14550 1.20857 0.75483 0.87040
0.83236 1.90554 1.56181 1.16312 1.82418 1.48649 1.61785 1.08729
1.16308 1.22688 1.03288 0.79435 0.98427 1.23554 1.01444 1.00902
0.92743 1.22494 0.98573 0.90951 0.82220 0.88693 1.86454 1.89972
1.44626 1.15787 1.21224 0.92667 0.94476 0.84653 1.22685 0.97085
0.98207 0.98736 1.22367 0.95777 0.96747 0.99543 1.22253 0.95999
0.96998 1.00407 1.22184 0.96929 0.94618 1.01251 0.95176 0.91689
0.92681 0.92147 0.90065 0.89929 0.89917 0.85787 0.74837 0.95142
0.89438 0.88797 0.92191 0.90382 0.95123 0.87982 0.95435
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.55 8.73 71.98 0.63 -4.92 16
2 C 0.01 0.51 1.75 -12.29 -0.02 0.49 16
3 H 0.06 2.61 5.27 -2.39 -0.01 2.59 16
4 C -0.54 -32.61 8.68 25.60 0.22 -32.39 16
5 H 0.02 1.11 7.57 -2.91 -0.02 1.08 16
6 C 0.02 1.46 5.20 84.65 0.44 1.90 16
7 N -0.93 -59.23 13.96 21.44 0.30 -58.93 16
8 Si 0.94 41.73 26.12 68.60 1.79 43.52 16
9 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16
10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16
11 H -0.22 -8.57 6.13 99.48 0.61 -7.96 16
12 C 0.54 25.60 5.84 87.66 0.51 26.11 16
13 O -0.58 -32.23 14.58 -3.05 -0.04 -32.27 16
14 N -0.62 -21.87 2.82 -764.61 -2.16 -24.03 16
15 C 0.08 2.04 6.18 86.92 0.54 2.58 16
16 C -0.15 -2.32 6.83 32.13 0.22 -2.10 16
17 C 0.12 2.15 3.73 31.65 0.12 2.27 16
18 H 0.10 1.38 7.40 -2.39 -0.02 1.36 16
19 O -0.56 -8.52 11.13 -148.98 -1.66 -10.18 16
20 C 0.15 4.62 0.73 4.25 0.00 4.62 16
21 C -0.13 -4.07 5.88 31.53 0.19 -3.89 16
22 C -0.11 -2.97 6.91 31.95 0.22 -2.75 16
23 C -0.12 -3.81 6.84 31.74 0.22 -3.59 16
24 C -0.11 -3.61 5.38 31.19 0.17 -3.44 16
25 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16
26 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16
27 H 0.05 2.38 5.92 -2.39 -0.01 2.37 16
28 H 0.27 15.78 8.31 -92.71 -0.77 15.00 16
29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16
30 H 0.08 1.97 7.58 -2.39 -0.02 1.95 16
31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16
32 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16
33 H 0.40 1.87 9.12 -74.06 -0.68 1.20 16
34 H 0.03 1.26 6.88 -2.39 -0.02 1.25 16
35 H 0.09 2.22 7.37 -2.39 -0.02 2.20 16
36 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16
37 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16
38 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16
39 H 0.03 1.20 8.07 -2.39 -0.02 1.18 16
40 H 0.10 2.85 5.97 -2.38 -0.01 2.84 16
41 H 0.03 1.07 7.11 -2.39 -0.02 1.06 16
Total: -1.00 -81.60 313.36 1.93 -79.67
By element:
Atomic # 1 Polarization: 17.05 SS G_CDS: 0.25 Total: 17.30 kcal
Atomic # 6 Polarization: -18.55 SS G_CDS: 3.45 Total: -15.10 kcal
Atomic # 7 Polarization: -81.10 SS G_CDS: -1.86 Total: -82.95 kcal
Atomic # 8 Polarization: -40.74 SS G_CDS: -1.70 Total: -42.45 kcal
Atomic # 14 Polarization: 41.73 SS G_CDS: 1.79 Total: 43.52 kcal
Total: -81.60 1.93 -79.67 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597694919.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.433 kcal
(2) G-P(sol) polarization free energy of solvation -81.604 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.038 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.671 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.104 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds