Wall clock time and date at job start Mon Mar 30 2020 05:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47286 * 2 1 4 4 C 1.50699 * 109.47178 * 239.99634 * 2 1 3 5 5 H 1.07995 * 119.99896 * 245.28902 * 4 2 1 6 6 C 1.37870 * 120.00025 * 65.55654 * 4 2 1 7 7 N 1.31515 * 120.00565 * 204.79462 * 6 4 2 8 8 Si 1.86806 * 119.99982 * 24.80061 * 6 4 2 9 9 H 1.48497 * 109.47164 * 85.71217 * 8 6 4 10 10 H 1.48499 * 109.47278 * 205.71259 * 8 6 4 11 11 H 1.48499 * 109.46811 * 325.71299 * 8 6 4 12 12 C 1.50699 * 109.46935 * 119.99664 * 2 1 3 13 13 O 1.21288 * 120.00270 * 79.67670 * 12 2 1 14 14 N 1.34777 * 120.00069 * 259.67846 * 12 2 1 15 15 C 1.47592 * 125.76807 * 4.71716 * 14 12 2 16 16 C 1.55180 * 104.73964 * 155.90991 * 15 14 12 17 17 C 1.55283 * 101.54843 * 36.99939 * 16 15 14 18 18 H 1.09000 * 110.75179 * 83.09963 * 17 16 15 19 19 O 1.42901 * 110.90966 * 206.38266 * 17 16 15 20 20 C 1.46437 * 125.77085 * 185.02715 * 14 12 2 21 21 C 1.53730 * 110.62618 * 60.69658 * 20 14 12 22 22 C 1.55017 * 104.06752 * 215.81315 * 21 20 14 23 23 C 1.54935 * 102.81347 * 37.48349 * 22 21 20 24 24 C 1.53341 * 110.83473 * 301.98387 * 20 14 12 25 25 H 1.08997 * 109.47319 * 183.80534 * 1 2 3 26 26 H 1.09006 * 109.47119 * 303.80587 * 1 2 3 27 27 H 1.09001 * 109.47269 * 63.80287 * 1 2 3 28 28 H 0.96993 * 120.00651 * 180.02562 * 7 6 4 29 29 H 1.09000 * 110.36332 * 274.84392 * 15 14 12 30 30 H 1.09002 * 110.36417 * 37.15699 * 15 14 12 31 31 H 1.08995 * 111.18039 * 278.87714 * 16 15 14 32 32 H 1.08998 * 110.92730 * 155.00814 * 16 15 14 33 33 H 0.96701 * 113.99704 * 293.45571 * 19 17 16 34 34 H 1.08998 * 110.51365 * 334.45906 * 21 20 14 35 35 H 1.08997 * 110.51349 * 97.17041 * 21 20 14 36 36 H 1.08989 * 110.74746 * 279.14928 * 22 21 20 37 37 H 1.09003 * 110.89658 * 155.88292 * 22 21 20 38 38 H 1.09004 * 110.48362 * 203.67112 * 23 22 21 39 39 H 1.09002 * 110.59890 * 81.09376 * 23 22 21 40 40 H 1.09004 * 110.07607 * 239.86601 * 24 20 14 41 41 H 1.09000 * 110.07292 * 1.40540 * 24 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5810 -1.6356 -1.1335 6 6 1.7964 -0.1765 -2.4794 7 7 1.7740 -0.9595 -3.5359 8 14 1.5085 1.6592 -2.6712 9 1 2.8146 2.3550 -2.7938 10 1 0.6986 1.9085 -3.8907 11 1 0.7834 2.1734 -1.4817 12 6 2.0323 -0.7103 1.2305 13 8 2.0570 -1.9225 1.2634 14 7 2.4541 0.0014 2.2945 15 6 2.3890 1.4695 2.4310 16 6 2.3876 1.7240 3.9618 17 6 3.3570 0.6187 4.4616 18 1 4.3936 0.9419 4.3656 19 8 3.0646 0.2567 5.8128 20 6 3.0602 -0.5508 3.5078 21 6 4.3596 -1.3002 3.1713 22 6 4.3721 -2.4950 4.1589 23 6 2.8783 -2.9009 4.2261 24 6 2.1181 -1.5577 4.1785 25 1 -0.3634 -1.0254 0.0682 26 1 -0.3634 0.5718 0.8540 27 1 -0.3634 0.4537 -0.9221 28 1 1.6083 -0.5838 -4.4146 29 1 3.2605 1.9325 1.9680 30 1 1.4721 1.8519 1.9825 31 1 1.3912 1.5890 4.3825 32 1 2.7751 2.7165 4.1919 33 1 3.2348 0.9603 6.4540 34 1 4.3393 -1.6563 2.1413 35 1 5.2247 -0.6584 3.3375 36 1 4.7315 -2.1820 5.1391 37 1 4.9776 -3.3140 3.7707 38 1 2.6672 -3.4259 5.1577 39 1 2.6107 -3.5212 3.3707 40 1 1.8767 -1.2285 5.1892 41 1 1.2058 -1.6648 3.5916 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597694919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:48 Heat of formation + Delta-G solvation = -110.104270 kcal Electronic energy + Delta-G solvation = -22160.290003 eV Core-core repulsion = 19038.811844 eV Total energy + Delta-G solvation = -3121.478159 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.84112 -39.33941 -36.98829 -36.30360 -35.62695 -33.27968 -31.43582 -29.82527 -29.51314 -27.26202 -25.38174 -24.30961 -23.09294 -21.77685 -21.20432 -19.15178 -18.84278 -18.13974 -17.73654 -16.93617 -16.62237 -16.08277 -15.96287 -15.36684 -15.15359 -14.85505 -14.47311 -14.38384 -14.14533 -14.00829 -13.60308 -13.26521 -12.91685 -12.81496 -12.70922 -12.54805 -12.35109 -12.31000 -12.09059 -12.00057 -11.95527 -11.68166 -11.49236 -11.39869 -11.30776 -10.73727 -10.51261 -10.33323 -9.50831 -8.36929 -6.32504 1.35667 1.39379 1.49927 1.88406 2.08335 2.34897 2.94121 3.19009 3.50393 3.59943 3.71224 3.90703 4.08583 4.13589 4.22616 4.39814 4.44068 4.46971 4.53841 4.67098 4.67198 4.72857 4.75033 4.83281 4.85765 4.92481 4.95784 5.00854 5.04661 5.13866 5.22496 5.23523 5.37325 5.42635 5.51170 5.56125 5.77148 6.21767 6.60302 6.76935 7.03364 7.23987 7.48985 8.81060 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026271 B = 0.006568 C = 0.005829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.543012 B = 4261.843753 C = 4802.707166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.011 3.989 3 H 0.061 0.939 4 C -0.536 4.536 5 H 0.015 0.985 6 C 0.025 3.975 7 N -0.930 5.930 8 Si 0.936 3.064 9 H -0.265 1.265 10 H -0.283 1.283 11 H -0.223 1.223 12 C 0.543 3.457 13 O -0.576 6.576 14 N -0.620 5.620 15 C 0.084 3.916 16 C -0.149 4.149 17 C 0.117 3.883 18 H 0.095 0.905 19 O -0.559 6.559 20 C 0.155 3.845 21 C -0.129 4.129 22 C -0.107 4.107 23 C -0.119 4.119 24 C -0.112 4.112 25 H 0.029 0.971 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.270 0.730 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.400 0.600 34 H 0.030 0.970 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.030 0.970 40 H 0.102 0.898 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.195 11.476 20.886 24.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.011 4.011 3 H 0.079 0.921 4 C -0.573 4.573 5 H 0.034 0.966 6 C -0.175 4.175 7 N -0.568 5.568 8 Si 0.757 3.243 9 H -0.190 1.190 10 H -0.209 1.209 11 H -0.145 1.145 12 C 0.334 3.666 13 O -0.455 6.455 14 N -0.355 5.355 15 C -0.038 4.038 16 C -0.186 4.186 17 C 0.058 3.942 18 H 0.113 0.887 19 O -0.368 6.368 20 C 0.070 3.930 21 C -0.167 4.167 22 C -0.144 4.144 23 C -0.157 4.157 24 C -0.150 4.150 25 H 0.048 0.952 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.142 0.858 33 H 0.252 0.748 34 H 0.049 0.951 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.049 0.951 40 H 0.120 0.880 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.980 10.214 20.367 22.979 hybrid contribution 0.023 0.259 -1.071 1.102 sum 3.003 10.473 19.296 22.159 Atomic orbital electron populations 1.21866 0.95216 1.00309 1.01029 1.19087 0.94885 0.96823 0.90324 0.92121 1.20727 1.37883 1.08189 0.90538 0.96631 1.25902 0.93392 1.03493 0.94670 1.70229 1.48394 1.37758 1.00392 0.85959 0.79454 0.79476 0.79458 1.18987 1.20923 1.14550 1.20857 0.75483 0.87040 0.83236 1.90554 1.56181 1.16312 1.82418 1.48649 1.61785 1.08729 1.16308 1.22688 1.03288 0.79435 0.98427 1.23554 1.01444 1.00902 0.92743 1.22494 0.98573 0.90951 0.82220 0.88693 1.86454 1.89972 1.44626 1.15787 1.21224 0.92667 0.94476 0.84653 1.22685 0.97085 0.98207 0.98736 1.22367 0.95777 0.96747 0.99543 1.22253 0.95999 0.96998 1.00407 1.22184 0.96929 0.94618 1.01251 0.95176 0.91689 0.92681 0.92147 0.90065 0.89929 0.89917 0.85787 0.74837 0.95142 0.89438 0.88797 0.92191 0.90382 0.95123 0.87982 0.95435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.55 8.73 71.98 0.63 -4.92 16 2 C 0.01 0.51 1.75 -12.29 -0.02 0.49 16 3 H 0.06 2.61 5.27 -2.39 -0.01 2.59 16 4 C -0.54 -32.61 8.68 25.60 0.22 -32.39 16 5 H 0.02 1.11 7.57 -2.91 -0.02 1.08 16 6 C 0.02 1.46 5.20 84.65 0.44 1.90 16 7 N -0.93 -59.23 13.96 21.44 0.30 -58.93 16 8 Si 0.94 41.73 26.12 68.60 1.79 43.52 16 9 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.22 -8.57 6.13 99.48 0.61 -7.96 16 12 C 0.54 25.60 5.84 87.66 0.51 26.11 16 13 O -0.58 -32.23 14.58 -3.05 -0.04 -32.27 16 14 N -0.62 -21.87 2.82 -764.61 -2.16 -24.03 16 15 C 0.08 2.04 6.18 86.92 0.54 2.58 16 16 C -0.15 -2.32 6.83 32.13 0.22 -2.10 16 17 C 0.12 2.15 3.73 31.65 0.12 2.27 16 18 H 0.10 1.38 7.40 -2.39 -0.02 1.36 16 19 O -0.56 -8.52 11.13 -148.98 -1.66 -10.18 16 20 C 0.15 4.62 0.73 4.25 0.00 4.62 16 21 C -0.13 -4.07 5.88 31.53 0.19 -3.89 16 22 C -0.11 -2.97 6.91 31.95 0.22 -2.75 16 23 C -0.12 -3.81 6.84 31.74 0.22 -3.59 16 24 C -0.11 -3.61 5.38 31.19 0.17 -3.44 16 25 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 27 H 0.05 2.38 5.92 -2.39 -0.01 2.37 16 28 H 0.27 15.78 8.31 -92.71 -0.77 15.00 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 1.97 7.58 -2.39 -0.02 1.95 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.40 1.87 9.12 -74.06 -0.68 1.20 16 34 H 0.03 1.26 6.88 -2.39 -0.02 1.25 16 35 H 0.09 2.22 7.37 -2.39 -0.02 2.20 16 36 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.03 1.20 8.07 -2.39 -0.02 1.18 16 40 H 0.10 2.85 5.97 -2.38 -0.01 2.84 16 41 H 0.03 1.07 7.11 -2.39 -0.02 1.06 16 Total: -1.00 -81.60 313.36 1.93 -79.67 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.25 Total: 17.30 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 3.45 Total: -15.10 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -1.86 Total: -82.95 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -1.70 Total: -42.45 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.79 Total: 43.52 kcal Total: -81.60 1.93 -79.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597694919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.433 kcal (2) G-P(sol) polarization free energy of solvation -81.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds