Wall clock time and date at job start Mon Mar 30 2020 05:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47559 * 2 1 4 4 C 1.50703 * 109.47097 * 120.00347 * 2 1 3 5 5 H 1.08001 * 120.00254 * 119.99918 * 4 2 1 6 6 C 1.37884 * 119.99726 * 299.99606 * 4 2 1 7 7 N 1.31510 * 119.99905 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99873 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.46867 * 89.99972 * 8 6 4 10 10 H 1.48503 * 109.46860 * 210.00010 * 8 6 4 11 11 H 1.48503 * 109.47045 * 329.99780 * 8 6 4 12 12 C 1.50706 * 109.47292 * 240.00091 * 2 1 3 13 13 O 1.21287 * 119.99589 * 255.71688 * 12 2 1 14 14 N 1.34768 * 119.99817 * 75.98379 * 12 2 1 15 15 C 1.47589 * 125.77460 * 354.43070 * 14 12 2 16 16 C 1.54956 * 104.85607 * 204.02082 * 15 14 12 17 17 C 1.55286 * 101.64155 * 323.29374 * 16 15 14 18 18 H 1.08997 * 110.74918 * 276.55160 * 17 16 15 19 19 O 1.42899 * 110.74697 * 153.37779 * 17 16 15 20 20 C 1.46445 * 125.76501 * 174.11912 * 14 12 2 21 21 C 1.53741 * 110.60544 * 58.40419 * 20 14 12 22 22 C 1.55005 * 104.06138 * 215.78195 * 21 20 14 23 23 C 1.54934 * 102.81908 * 37.48353 * 22 21 20 24 24 C 1.53333 * 110.85966 * 299.68742 * 20 14 12 25 25 H 1.08993 * 109.47228 * 186.66855 * 1 2 3 26 26 H 1.09007 * 109.46822 * 306.67321 * 1 2 3 27 27 H 1.09000 * 109.47068 * 66.66619 * 1 2 3 28 28 H 0.97003 * 120.00120 * 180.02562 * 7 6 4 29 29 H 1.09000 * 110.35894 * 322.86333 * 15 14 12 30 30 H 1.08999 * 110.36577 * 85.17068 * 15 14 12 31 31 H 1.08995 * 110.99335 * 81.38102 * 16 15 14 32 32 H 1.08995 * 110.99266 * 205.16712 * 16 15 14 33 33 H 0.96702 * 113.99585 * 61.45825 * 19 17 16 34 34 H 1.09001 * 110.51169 * 334.42843 * 21 20 14 35 35 H 1.08998 * 110.50907 * 97.13633 * 21 20 14 36 36 H 1.09009 * 110.74263 * 279.15357 * 22 21 20 37 37 H 1.09002 * 110.74632 * 155.82286 * 22 21 20 38 38 H 1.08998 * 110.48701 * 203.67269 * 23 22 21 39 39 H 1.08998 * 110.59399 * 81.09476 * 23 22 21 40 40 H 1.09007 * 110.07105 * 239.87327 * 24 20 14 41 41 H 1.08996 * 110.07325 * 1.35409 * 24 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 2.1380 -0.8591 3.5565 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8726 2.6998 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 6 2.0324 -0.7104 -1.2305 13 8 2.4788 -1.8346 -1.1418 14 7 1.9905 -0.0945 -2.4285 15 6 1.3772 1.2199 -2.7019 16 6 1.0381 1.1933 -4.2136 17 6 2.2430 0.4021 -4.7912 18 1 3.0945 1.0620 -4.9570 19 8 1.8778 -0.2639 -6.0016 20 6 2.5514 -0.6133 -3.6778 21 6 1.9309 -1.9765 -4.0245 22 6 3.0986 -2.7700 -4.6644 23 6 4.3200 -2.3229 -3.8226 24 6 4.0648 -0.8245 -3.5505 25 1 -0.3633 -1.0206 0.1193 26 1 -0.3633 0.6138 0.8243 27 1 -0.3633 0.4070 -0.9436 28 1 1.9034 -0.5279 4.4376 29 1 0.4694 1.3449 -2.1117 30 1 2.0843 2.0207 -2.4858 31 1 0.1017 0.6656 -4.3945 32 1 1.0006 2.2027 -4.6232 33 1 1.6005 0.3325 -6.7104 34 1 1.5786 -2.4764 -3.1222 35 1 1.1158 -1.8547 -4.7378 36 1 3.2275 -2.4911 -5.7102 37 1 2.9349 -3.8433 -4.5674 38 1 5.2424 -2.4562 -4.3879 39 1 4.3642 -2.8785 -2.8859 40 1 4.5907 -0.2159 -4.2862 41 1 4.3956 -0.5644 -2.5451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597694921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:52 Heat of formation + Delta-G solvation = -78.712995 kcal Electronic energy + Delta-G solvation = -22198.307272 eV Core-core repulsion = 19078.190341 eV Total energy + Delta-G solvation = -3120.116931 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.60155 -37.84872 -35.97390 -35.13886 -33.71364 -31.34341 -30.23068 -28.55365 -28.33163 -25.20494 -24.11396 -22.80940 -22.11623 -20.38579 -19.89600 -17.78298 -17.33225 -16.75358 -16.17067 -15.59237 -14.98419 -14.62216 -14.55176 -14.22322 -13.96202 -13.65827 -13.26629 -12.85604 -12.81783 -12.34949 -12.32050 -11.82469 -11.54793 -11.44404 -11.26368 -11.09857 -10.94380 -10.81381 -10.65727 -10.55847 -10.32684 -10.23861 -10.13591 -9.92610 -9.62353 -9.10101 -8.61860 -8.53321 -8.10847 -6.05062 -4.04920 3.23436 3.29478 3.35246 3.36811 3.57426 4.05994 4.37855 4.47069 4.58445 4.84529 5.04198 5.05518 5.24597 5.30281 5.31728 5.46486 5.56593 5.62868 5.76097 5.78846 5.92781 5.94698 6.04267 6.06240 6.15394 6.18647 6.24524 6.28706 6.36927 6.45060 6.50599 6.62113 6.68207 6.77787 7.05425 7.18469 7.50004 7.57050 8.13545 8.54757 9.10791 9.14791 9.54098 11.07979 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027567 B = 0.006531 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.446628 B = 4286.328278 C = 4933.930265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.001 3.999 3 H 0.046 0.954 4 C -0.503 4.503 5 H 0.092 0.908 6 C 0.071 3.929 7 N -0.896 5.896 8 Si 0.883 3.117 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.268 1.268 12 C 0.548 3.452 13 O -0.518 6.518 14 N -0.623 5.623 15 C 0.098 3.902 16 C -0.168 4.168 17 C 0.104 3.896 18 H 0.071 0.929 19 O -0.549 6.549 20 C 0.169 3.831 21 C -0.117 4.117 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.121 4.121 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.035 0.965 28 H 0.264 0.736 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.375 0.625 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 6.164 -19.225 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 H 0.063 0.937 4 C -0.542 4.542 5 H 0.110 0.890 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.713 3.287 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.339 3.661 13 O -0.391 6.391 14 N -0.360 5.360 15 C -0.026 4.026 16 C -0.206 4.206 17 C 0.045 3.955 18 H 0.089 0.911 19 O -0.354 6.354 20 C 0.083 3.917 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.156 4.156 24 C -0.160 4.160 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.222 0.778 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.208 4.955 -18.488 19.179 hybrid contribution -0.809 1.584 -0.013 1.779 sum -2.017 6.539 -18.501 19.726 Atomic orbital electron populations 1.22170 0.97297 1.01984 0.98883 1.19282 0.93223 0.97267 0.92260 0.93651 1.20920 1.32146 1.13885 0.87206 0.89025 1.24960 0.95795 0.96552 0.95746 1.69880 1.45471 1.40172 0.97853 0.86931 0.80863 0.83905 0.76986 1.20507 1.22265 1.19302 1.20984 0.76947 0.86057 0.82148 1.90580 1.44963 1.18695 1.84881 1.48723 1.59413 1.20240 1.07660 1.22309 0.98796 0.86491 0.94974 1.23563 0.99772 1.01093 0.96164 1.22713 0.95648 0.92317 0.84847 0.91112 1.86554 1.88793 1.37161 1.22904 1.20929 0.93575 0.93893 0.83269 1.22448 0.98139 0.94010 1.00900 1.22358 0.94874 0.99054 0.98794 1.22294 0.97378 0.95568 1.00345 1.22413 0.94181 0.97354 1.02014 0.92063 0.93437 0.94588 0.92569 0.89776 0.91609 0.89794 0.90033 0.77793 0.90390 0.90996 0.91552 0.92272 0.92521 0.90827 0.92102 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 8.41 37.16 0.31 -2.79 16 2 C 0.00 0.03 1.59 -92.92 -0.15 -0.12 16 3 H 0.05 1.05 6.99 -51.93 -0.36 0.68 16 4 C -0.50 -14.64 8.93 -34.44 -0.31 -14.95 16 5 H 0.09 3.03 7.11 -52.49 -0.37 2.66 16 6 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 7 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 8 Si 0.88 21.41 24.30 -169.99 -4.13 17.28 16 9 H -0.28 -6.56 6.93 56.52 0.39 -6.17 16 10 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.27 -6.01 6.53 56.52 0.37 -5.64 16 12 C 0.55 12.26 6.17 -10.99 -0.07 12.19 16 13 O -0.52 -13.27 13.98 5.55 0.08 -13.19 16 14 N -0.62 -10.91 2.81 -155.73 -0.44 -11.34 16 15 C 0.10 1.32 6.45 -2.41 -0.02 1.31 16 16 C -0.17 -1.70 6.82 -24.49 -0.17 -1.87 16 17 C 0.10 1.17 3.64 -25.09 -0.09 1.08 16 18 H 0.07 0.71 7.46 -51.93 -0.39 0.32 16 19 O -0.55 -5.52 10.98 -35.23 -0.39 -5.90 16 20 C 0.17 2.59 0.73 -130.87 -0.10 2.49 16 21 C -0.12 -1.88 5.35 -25.29 -0.14 -2.02 16 22 C -0.11 -1.64 6.78 -24.65 -0.17 -1.81 16 23 C -0.12 -1.81 6.84 -24.97 -0.17 -1.98 16 24 C -0.12 -1.89 5.74 -25.82 -0.15 -2.03 16 25 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 26 H 0.05 1.02 3.48 -51.93 -0.18 0.84 16 27 H 0.04 0.62 5.73 -51.93 -0.30 0.33 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.08 1.15 5.45 -51.93 -0.28 0.86 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.38 1.99 9.11 45.56 0.42 2.40 16 34 H 0.08 1.53 6.35 -51.93 -0.33 1.20 16 35 H 0.07 1.10 6.74 -51.93 -0.35 0.75 16 36 H 0.07 0.88 7.80 -51.92 -0.40 0.48 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.06 0.80 7.30 -51.93 -0.38 0.42 16 41 H 0.07 1.31 7.51 -51.93 -0.39 0.92 16 LS Contribution 305.83 15.07 4.61 4.61 Total: -1.00 -33.70 305.83 -6.25 -39.95 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.46 Total: 4.15 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -1.30 Total: -8.52 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.34 Total: -38.37 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.31 Total: -19.10 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.13 Total: 17.28 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.70 -6.25 -39.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597694921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.759 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds