Wall clock time and date at job start Mon Mar 30 2020 05:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47559 * 2 1 4 4 C 1.50703 * 109.47097 * 120.00347 * 2 1 3 5 5 H 1.08001 * 120.00254 * 119.99918 * 4 2 1 6 6 C 1.37884 * 119.99726 * 299.99606 * 4 2 1 7 7 N 1.31510 * 119.99905 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99873 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.46867 * 89.99972 * 8 6 4 10 10 H 1.48503 * 109.46860 * 210.00010 * 8 6 4 11 11 H 1.48503 * 109.47045 * 329.99780 * 8 6 4 12 12 C 1.50706 * 109.47292 * 240.00091 * 2 1 3 13 13 O 1.21287 * 119.99589 * 255.71688 * 12 2 1 14 14 N 1.34768 * 119.99817 * 75.98379 * 12 2 1 15 15 C 1.47589 * 125.77460 * 354.43070 * 14 12 2 16 16 C 1.54956 * 104.85607 * 204.02082 * 15 14 12 17 17 C 1.55286 * 101.64155 * 323.29374 * 16 15 14 18 18 H 1.08997 * 110.74918 * 276.55160 * 17 16 15 19 19 O 1.42899 * 110.74697 * 153.37779 * 17 16 15 20 20 C 1.46445 * 125.76501 * 174.11912 * 14 12 2 21 21 C 1.53741 * 110.60544 * 58.40419 * 20 14 12 22 22 C 1.55005 * 104.06138 * 215.78195 * 21 20 14 23 23 C 1.54934 * 102.81908 * 37.48353 * 22 21 20 24 24 C 1.53333 * 110.85966 * 299.68742 * 20 14 12 25 25 H 1.08993 * 109.47228 * 186.66855 * 1 2 3 26 26 H 1.09007 * 109.46822 * 306.67321 * 1 2 3 27 27 H 1.09000 * 109.47068 * 66.66619 * 1 2 3 28 28 H 0.97003 * 120.00120 * 180.02562 * 7 6 4 29 29 H 1.09000 * 110.35894 * 322.86333 * 15 14 12 30 30 H 1.08999 * 110.36577 * 85.17068 * 15 14 12 31 31 H 1.08995 * 110.99335 * 81.38102 * 16 15 14 32 32 H 1.08995 * 110.99266 * 205.16712 * 16 15 14 33 33 H 0.96702 * 113.99585 * 61.45825 * 19 17 16 34 34 H 1.09001 * 110.51169 * 334.42843 * 21 20 14 35 35 H 1.08998 * 110.50907 * 97.13633 * 21 20 14 36 36 H 1.09009 * 110.74263 * 279.15357 * 22 21 20 37 37 H 1.09002 * 110.74632 * 155.82286 * 22 21 20 38 38 H 1.08998 * 110.48701 * 203.67269 * 23 22 21 39 39 H 1.08998 * 110.59399 * 81.09476 * 23 22 21 40 40 H 1.09007 * 110.07105 * 239.87327 * 24 20 14 41 41 H 1.08996 * 110.07325 * 1.35409 * 24 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 2.1380 -0.8591 3.5565 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8726 2.6998 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 6 2.0324 -0.7104 -1.2305 13 8 2.4788 -1.8346 -1.1418 14 7 1.9905 -0.0945 -2.4285 15 6 1.3772 1.2199 -2.7019 16 6 1.0381 1.1933 -4.2136 17 6 2.2430 0.4021 -4.7912 18 1 3.0945 1.0620 -4.9570 19 8 1.8778 -0.2639 -6.0016 20 6 2.5514 -0.6133 -3.6778 21 6 1.9309 -1.9765 -4.0245 22 6 3.0986 -2.7700 -4.6644 23 6 4.3200 -2.3229 -3.8226 24 6 4.0648 -0.8245 -3.5505 25 1 -0.3633 -1.0206 0.1193 26 1 -0.3633 0.6138 0.8243 27 1 -0.3633 0.4070 -0.9436 28 1 1.9034 -0.5279 4.4376 29 1 0.4694 1.3449 -2.1117 30 1 2.0843 2.0207 -2.4858 31 1 0.1017 0.6656 -4.3945 32 1 1.0006 2.2027 -4.6232 33 1 1.6005 0.3325 -6.7104 34 1 1.5786 -2.4764 -3.1222 35 1 1.1158 -1.8547 -4.7378 36 1 3.2275 -2.4911 -5.7102 37 1 2.9349 -3.8433 -4.5674 38 1 5.2424 -2.4562 -4.3879 39 1 4.3642 -2.8785 -2.8859 40 1 4.5907 -0.2159 -4.2862 41 1 4.3956 -0.5644 -2.5451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597694921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:52 Heat of formation + Delta-G solvation = -105.106539 kcal Electronic energy + Delta-G solvation = -22199.451782 eV Core-core repulsion = 19078.190341 eV Total energy + Delta-G solvation = -3121.261441 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.86797 -39.35302 -37.00334 -36.33553 -35.67899 -33.36229 -31.43286 -29.76760 -29.54137 -27.21641 -25.50385 -24.28576 -23.19741 -21.68637 -21.24021 -19.18967 -18.77949 -18.21536 -17.69570 -17.09088 -16.51852 -16.04890 -16.00898 -15.38927 -15.21756 -15.00941 -14.67487 -14.54967 -14.05185 -13.93926 -13.69480 -13.43380 -12.93020 -12.71872 -12.64699 -12.46636 -12.38090 -12.20256 -12.12059 -12.05005 -11.85709 -11.49820 -11.42460 -11.27517 -11.25259 -10.80264 -10.72659 -10.29891 -9.51002 -8.29796 -6.37679 1.30306 1.36709 1.48214 1.85569 2.05229 2.32008 3.03610 3.19165 3.50903 3.60339 3.75587 3.89658 4.00858 4.14990 4.21775 4.34130 4.42699 4.45595 4.53154 4.57144 4.59982 4.68518 4.76033 4.80518 4.85768 4.89005 4.97766 4.99446 5.03944 5.14423 5.22163 5.23127 5.36709 5.40437 5.47432 5.53269 5.76269 6.25605 6.59885 6.80482 7.03612 7.23627 7.49033 8.88161 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027567 B = 0.006531 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.446628 B = 4286.328278 C = 4933.930265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.001 3.999 3 H 0.063 0.937 4 C -0.520 4.520 5 H 0.025 0.975 6 C 0.007 3.993 7 N -0.952 5.952 8 Si 0.958 3.042 9 H -0.262 1.262 10 H -0.296 1.296 11 H -0.228 1.228 12 C 0.541 3.459 13 O -0.571 6.571 14 N -0.618 5.618 15 C 0.080 3.920 16 C -0.151 4.151 17 C 0.118 3.882 18 H 0.095 0.905 19 O -0.560 6.560 20 C 0.155 3.845 21 C -0.115 4.115 22 C -0.104 4.104 23 C -0.121 4.121 24 C -0.121 4.121 25 H 0.039 0.961 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.268 0.732 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.125 0.875 33 H 0.400 0.600 34 H 0.030 0.970 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.030 0.970 40 H 0.095 0.905 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 10.088 -22.817 25.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.021 4.021 3 H 0.080 0.920 4 C -0.558 4.558 5 H 0.043 0.957 6 C -0.190 4.190 7 N -0.592 5.592 8 Si 0.782 3.218 9 H -0.187 1.187 10 H -0.223 1.223 11 H -0.151 1.151 12 C 0.332 3.668 13 O -0.449 6.449 14 N -0.353 5.353 15 C -0.041 4.041 16 C -0.189 4.189 17 C 0.058 3.942 18 H 0.112 0.888 19 O -0.369 6.369 20 C 0.070 3.930 21 C -0.154 4.154 22 C -0.142 4.142 23 C -0.158 4.158 24 C -0.159 4.159 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.143 0.857 33 H 0.251 0.749 34 H 0.049 0.951 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.049 0.951 40 H 0.113 0.887 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.923 8.926 -22.168 24.076 hybrid contribution -0.183 0.238 1.063 1.105 sum -3.106 9.164 -21.105 23.217 Atomic orbital electron populations 1.22051 0.94844 1.01271 1.01468 1.19180 0.95100 0.97108 0.90676 0.91951 1.21056 1.31784 1.12579 0.90400 0.95652 1.26036 0.97405 1.00815 0.94705 1.70078 1.47588 1.42823 0.98733 0.85730 0.78770 0.79061 0.78224 1.18741 1.22324 1.15125 1.20732 0.76904 0.85538 0.83653 1.90564 1.47386 1.20955 1.85962 1.48567 1.58343 1.21548 1.06849 1.22755 0.99042 0.84427 0.97917 1.23549 0.98970 1.03330 0.93009 1.22514 0.97086 0.90622 0.83944 0.88773 1.86488 1.88945 1.38332 1.23092 1.21236 0.92899 0.94912 0.83954 1.22372 0.99136 0.94702 0.99161 1.22334 0.93523 0.98695 0.99655 1.22286 0.99250 0.95377 0.98931 1.22434 0.95110 0.97669 1.00722 0.94130 0.93024 0.90090 0.92337 0.89580 0.89883 0.89913 0.85703 0.74866 0.95106 0.89662 0.88968 0.92704 0.89953 0.95121 0.88686 0.94841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.67 8.41 71.98 0.61 -5.07 16 2 C 0.00 0.05 1.59 -12.28 -0.02 0.03 16 3 H 0.06 2.76 6.99 -2.38 -0.02 2.75 16 4 C -0.52 -32.05 8.93 25.60 0.23 -31.82 16 5 H 0.03 1.84 7.11 -2.91 -0.02 1.82 16 6 C 0.01 0.41 5.45 84.66 0.46 0.87 16 7 N -0.95 -62.23 13.96 21.45 0.30 -61.93 16 8 Si 0.96 43.61 24.30 68.60 1.67 45.28 16 9 H -0.26 -11.21 6.93 99.48 0.69 -10.53 16 10 H -0.30 -13.44 7.11 99.48 0.71 -12.74 16 11 H -0.23 -8.90 6.53 99.48 0.65 -8.25 16 12 C 0.54 25.12 6.17 87.66 0.54 25.66 16 13 O -0.57 -31.90 13.98 -3.05 -0.04 -31.94 16 14 N -0.62 -21.02 2.81 -765.01 -2.15 -23.17 16 15 C 0.08 1.84 6.45 86.84 0.56 2.40 16 16 C -0.15 -2.19 6.82 32.05 0.22 -1.97 16 17 C 0.12 2.07 3.64 31.65 0.12 2.18 16 18 H 0.09 1.29 7.46 -2.39 -0.02 1.28 16 19 O -0.56 -8.29 10.98 -148.98 -1.64 -9.93 16 20 C 0.16 4.50 0.73 4.25 0.00 4.50 16 21 C -0.12 -3.70 5.35 31.53 0.17 -3.53 16 22 C -0.10 -2.96 6.78 31.94 0.22 -2.75 16 23 C -0.12 -3.78 6.84 31.73 0.22 -3.56 16 24 C -0.12 -3.70 5.74 31.18 0.18 -3.52 16 25 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.05 2.05 3.48 -2.38 -0.01 2.04 16 27 H 0.08 2.54 5.73 -2.39 -0.01 2.53 16 28 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 29 H 0.09 1.94 5.45 -2.39 -0.01 1.93 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.40 1.77 9.11 -74.06 -0.67 1.10 16 34 H 0.03 1.27 6.35 -2.39 -0.02 1.25 16 35 H 0.08 2.44 6.74 -2.39 -0.02 2.43 16 36 H 0.09 2.17 7.80 -2.38 -0.02 2.15 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.09 2.21 7.30 -2.38 -0.02 2.19 16 41 H 0.03 1.26 7.51 -2.39 -0.02 1.24 16 Total: -1.00 -83.28 305.83 1.92 -81.35 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.29 Total: 16.90 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 3.50 Total: -16.57 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -1.85 Total: -85.10 kcal Atomic # 8 Polarization: -40.19 SS G_CDS: -1.68 Total: -41.87 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.67 Total: 45.28 kcal Total: -83.28 1.92 -81.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597694921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.752 kcal (2) G-P(sol) polarization free energy of solvation -83.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds