Wall clock time and date at job start Mon Mar 30 2020 05:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46895 * 2 1 4 4 C 1.50701 * 109.46782 * 120.00135 * 2 1 3 5 5 H 1.07995 * 120.00034 * 120.00163 * 4 2 1 6 6 C 1.37881 * 119.99935 * 299.99618 * 4 2 1 7 7 N 1.31516 * 119.99951 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99938 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46922 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47242 * 120.00127 * 8 6 4 11 11 H 1.48497 * 109.46859 * 240.00032 * 8 6 4 12 12 C 1.50698 * 109.46697 * 239.99898 * 2 1 3 13 13 O 1.21289 * 119.99905 * 263.29843 * 12 2 1 14 14 N 1.34775 * 120.00074 * 83.30602 * 12 2 1 15 15 C 1.46934 * 120.68559 * 4.64511 * 14 12 2 16 16 C 1.52717 * 109.13730 * 234.05006 * 15 14 12 17 17 C 1.53144 * 109.35765 * 305.07405 * 16 15 14 18 18 C 1.52391 * 109.64624 * 60.24523 * 17 16 15 19 19 C 1.54282 * 110.12472 * 62.24302 * 18 17 16 20 20 C 1.55117 * 101.96144 * 98.20708 * 19 18 17 21 21 O 1.44433 * 103.55358 * 36.60363 * 20 19 18 22 22 C 1.43897 * 107.00531 * 320.27855 * 21 20 19 23 23 C 1.47053 * 120.68549 * 184.91683 * 14 12 2 24 24 H 1.08996 * 109.47141 * 305.91457 * 1 2 3 25 25 H 1.08994 * 109.47520 * 185.91126 * 1 2 3 26 26 H 1.09007 * 109.46960 * 65.91056 * 1 2 3 27 27 H 0.96998 * 120.00245 * 179.97438 * 7 6 4 28 28 H 1.08995 * 109.56695 * 353.91525 * 15 14 12 29 29 H 1.08995 * 109.56811 * 114.27954 * 15 14 12 30 30 H 1.08994 * 109.57559 * 185.04256 * 16 15 14 31 31 H 1.09002 * 109.35524 * 64.96993 * 16 15 14 32 32 H 1.09001 * 109.44117 * 300.19343 * 17 16 15 33 33 H 1.08999 * 109.44138 * 180.30201 * 17 16 15 34 34 H 1.09001 * 110.93525 * 216.37394 * 19 18 17 35 35 H 1.08996 * 110.93279 * 340.04477 * 19 18 17 36 36 H 1.08996 * 110.60644 * 278.08932 * 20 19 18 37 37 H 1.09002 * 110.73961 * 155.17946 * 20 19 18 38 38 H 1.08994 * 109.91194 * 266.98384 * 22 21 20 39 39 H 1.09003 * 109.90524 * 145.71051 * 22 21 20 40 40 H 1.08994 * 109.58142 * 247.17826 * 23 14 12 41 41 H 1.09000 * 109.57276 * 7.44222 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.1471 -2.2864 3.6038 10 1 3.1471 -0.1859 4.8161 11 1 1.1676 -1.5865 4.8165 12 6 2.0323 -0.7104 -1.2305 13 8 2.3499 -1.8793 -1.1686 14 7 2.1286 -0.0469 -2.3996 15 6 1.8453 1.3931 -2.4700 16 6 0.7934 1.6443 -3.5484 17 6 1.2711 1.0429 -4.8733 18 6 1.4749 -0.4585 -4.7106 19 6 0.1373 -1.1403 -4.3553 20 6 -0.3293 -1.6719 -5.7358 21 8 0.9002 -2.0803 -6.3743 22 6 1.8936 -1.0926 -6.0451 23 6 2.5136 -0.7504 -3.6322 24 1 -0.3633 0.6028 0.8323 25 1 -0.3634 -1.0221 0.1058 26 1 -0.3633 0.4195 -0.9382 27 1 0.7081 1.1610 3.4843 28 1 1.4686 1.7386 -1.5074 29 1 2.7581 1.9329 -2.7219 30 1 0.6430 2.7171 -3.6690 31 1 -0.1454 1.1755 -3.2535 32 1 2.2134 1.5076 -5.1638 33 1 0.5237 1.2261 -5.6453 34 1 0.2923 -1.9604 -3.6543 35 1 -0.5741 -0.4176 -3.9557 36 1 -0.8141 -0.8808 -6.3076 37 1 -0.9998 -2.5228 -5.6152 38 1 1.9310 -0.3301 -6.8229 39 1 2.8690 -1.5679 -5.9403 40 1 3.4914 -0.4000 -3.9626 41 1 2.5548 -1.8230 -3.4428 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597751390.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:10 Heat of formation + Delta-G solvation = -89.485493 kcal Electronic energy + Delta-G solvation = -21886.282488 eV Core-core repulsion = 18765.698426 eV Total energy + Delta-G solvation = -3120.584062 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.63174 -38.68200 -36.43240 -33.85600 -32.87107 -31.54114 -30.40680 -29.74605 -25.89528 -25.40223 -25.17045 -22.91298 -22.06716 -21.94436 -19.20315 -18.06438 -16.52878 -16.41299 -16.22729 -15.62531 -15.18740 -15.02073 -14.58953 -14.20626 -13.94046 -13.60668 -13.22969 -13.04390 -12.81397 -12.65380 -12.30357 -11.86910 -11.61852 -11.41743 -11.22073 -11.01437 -10.87691 -10.77435 -10.65759 -10.64904 -10.46156 -10.34527 -10.24134 -9.99395 -9.73655 -8.95580 -8.58188 -8.30702 -8.05323 -6.05071 -4.07408 3.31290 3.38953 3.46532 3.59860 3.70319 3.91150 4.41908 4.46078 4.58094 4.77727 5.02453 5.03978 5.16183 5.20496 5.28836 5.31834 5.48886 5.56297 5.59495 5.65308 5.69349 5.83154 5.88518 5.89089 5.96211 6.07487 6.11074 6.15716 6.32929 6.39753 6.65479 6.80120 6.82578 6.95641 7.10281 7.44139 7.74252 7.97054 8.08738 8.38126 8.99216 9.22082 9.57629 11.02885 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.033258 B = 0.005185 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.689047 B = 5398.807752 C = 5644.981111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.031 3.969 3 H 0.048 0.952 4 C -0.499 4.499 5 H 0.070 0.930 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.525 3.475 13 O -0.547 6.547 14 N -0.624 5.624 15 C 0.107 3.893 16 C -0.137 4.137 17 C -0.102 4.102 18 C -0.106 4.106 19 C -0.142 4.142 20 C 0.047 3.953 21 O -0.380 6.380 22 C 0.059 3.941 23 C 0.127 3.873 24 H 0.090 0.910 25 H 0.034 0.966 26 H 0.011 0.989 27 H 0.260 0.740 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 3.511 -15.851 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.010 3.990 3 H 0.065 0.935 4 C -0.538 4.538 5 H 0.088 0.912 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.316 3.684 13 O -0.423 6.423 14 N -0.360 5.360 15 C -0.016 4.016 16 C -0.175 4.175 17 C -0.140 4.140 18 C -0.107 4.107 19 C -0.180 4.180 20 C -0.029 4.029 21 O -0.299 6.299 22 C -0.018 4.018 23 C 0.003 3.997 24 H 0.108 0.892 25 H 0.053 0.947 26 H 0.030 0.970 27 H 0.070 0.930 28 H 0.118 0.882 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.646 2.783 -15.771 16.099 hybrid contribution 0.234 -0.055 0.902 0.934 sum -1.412 2.728 -14.869 15.183 Atomic orbital electron populations 1.21679 0.96152 1.00921 0.99643 1.18888 0.94222 0.96583 0.89288 0.93464 1.21138 1.31085 1.12464 0.89106 0.91201 1.24932 0.95088 0.95041 0.99065 1.69884 1.37114 1.23100 1.23446 0.86414 0.78665 0.79782 0.82516 1.19597 1.21043 1.20995 1.22015 0.75026 0.87184 0.84142 1.90530 1.49112 1.17730 1.84884 1.48339 1.70711 1.08991 1.07934 1.21618 0.97723 0.81530 1.00772 1.21940 0.99800 1.00831 0.94937 1.21457 1.01423 0.93389 0.97718 1.21878 0.96818 0.96445 0.95569 1.23201 0.96143 1.01060 0.97561 1.23587 0.87599 0.99651 0.92093 1.88879 1.20037 1.47420 1.73581 1.23144 0.92945 0.91314 0.94394 1.21350 0.95119 0.99244 0.83953 0.89169 0.94694 0.97001 0.93014 0.88201 0.92337 0.90820 0.91069 0.91585 0.91877 0.90072 0.89779 0.92495 0.89192 0.92174 0.89705 0.92456 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.69 37.16 0.32 -2.59 16 2 C 0.03 0.77 1.79 -92.92 -0.17 0.60 16 3 H 0.05 1.18 6.36 -51.93 -0.33 0.84 16 4 C -0.50 -14.14 8.34 -34.44 -0.29 -14.43 16 5 H 0.07 2.10 6.99 -52.49 -0.37 1.74 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -24.88 11.39 55.43 0.63 -24.25 16 8 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.52 12.02 6.81 -10.99 -0.07 11.95 16 13 O -0.55 -14.39 15.21 5.55 0.08 -14.31 16 14 N -0.62 -11.05 2.81 -173.35 -0.49 -11.53 16 15 C 0.11 1.56 6.05 -3.95 -0.02 1.53 16 16 C -0.14 -1.57 5.86 -26.80 -0.16 -1.73 16 17 C -0.10 -1.06 4.47 -26.97 -0.12 -1.18 16 18 C -0.11 -1.29 0.63 -154.09 -0.10 -1.39 16 19 C -0.14 -1.85 5.85 -24.94 -0.15 -2.00 16 20 C 0.05 0.54 7.73 38.28 0.30 0.84 16 21 O -0.38 -5.10 11.53 -35.23 -0.41 -5.51 16 22 C 0.06 0.68 7.04 37.45 0.26 0.94 16 23 C 0.13 1.93 4.80 -3.97 -0.02 1.91 16 24 H 0.09 2.25 6.25 -51.93 -0.32 1.93 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.01 0.22 7.80 -51.92 -0.40 -0.18 16 27 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 28 H 0.10 1.63 5.21 -51.93 -0.27 1.36 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.89 6.26 -51.93 -0.33 0.56 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.28 7.74 -51.93 -0.40 0.88 16 35 H 0.08 1.06 5.98 -51.93 -0.31 0.75 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.58 7.68 -51.93 -0.40 0.18 16 39 H 0.08 0.93 7.68 -51.93 -0.40 0.53 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 1.60 6.90 -51.93 -0.36 1.24 16 LS Contribution 313.47 15.07 4.72 4.72 Total: -1.00 -31.16 313.47 -7.19 -38.35 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.41 Total: -0.20 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -0.30 Total: -4.01 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.14 Total: -35.78 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.32 Total: -19.81 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.16 -7.19 -38.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597751390.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.133 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds