Wall clock time and date at job start Mon Mar 30 2020 05:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46895 * 2 1 4 4 C 1.50701 * 109.46782 * 120.00135 * 2 1 3 5 5 H 1.07995 * 120.00034 * 120.00163 * 4 2 1 6 6 C 1.37881 * 119.99935 * 299.99618 * 4 2 1 7 7 N 1.31516 * 119.99951 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99938 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46922 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47242 * 120.00127 * 8 6 4 11 11 H 1.48497 * 109.46859 * 240.00032 * 8 6 4 12 12 C 1.50698 * 109.46697 * 239.99898 * 2 1 3 13 13 O 1.21289 * 119.99905 * 263.29843 * 12 2 1 14 14 N 1.34775 * 120.00074 * 83.30602 * 12 2 1 15 15 C 1.46934 * 120.68559 * 4.64511 * 14 12 2 16 16 C 1.52717 * 109.13730 * 234.05006 * 15 14 12 17 17 C 1.53144 * 109.35765 * 305.07405 * 16 15 14 18 18 C 1.52391 * 109.64624 * 60.24523 * 17 16 15 19 19 C 1.54282 * 110.12472 * 62.24302 * 18 17 16 20 20 C 1.55117 * 101.96144 * 98.20708 * 19 18 17 21 21 O 1.44433 * 103.55358 * 36.60363 * 20 19 18 22 22 C 1.43897 * 107.00531 * 320.27855 * 21 20 19 23 23 C 1.47053 * 120.68549 * 184.91683 * 14 12 2 24 24 H 1.08996 * 109.47141 * 305.91457 * 1 2 3 25 25 H 1.08994 * 109.47520 * 185.91126 * 1 2 3 26 26 H 1.09007 * 109.46960 * 65.91056 * 1 2 3 27 27 H 0.96998 * 120.00245 * 179.97438 * 7 6 4 28 28 H 1.08995 * 109.56695 * 353.91525 * 15 14 12 29 29 H 1.08995 * 109.56811 * 114.27954 * 15 14 12 30 30 H 1.08994 * 109.57559 * 185.04256 * 16 15 14 31 31 H 1.09002 * 109.35524 * 64.96993 * 16 15 14 32 32 H 1.09001 * 109.44117 * 300.19343 * 17 16 15 33 33 H 1.08999 * 109.44138 * 180.30201 * 17 16 15 34 34 H 1.09001 * 110.93525 * 216.37394 * 19 18 17 35 35 H 1.08996 * 110.93279 * 340.04477 * 19 18 17 36 36 H 1.08996 * 110.60644 * 278.08932 * 20 19 18 37 37 H 1.09002 * 110.73961 * 155.17946 * 20 19 18 38 38 H 1.08994 * 109.91194 * 266.98384 * 22 21 20 39 39 H 1.09003 * 109.90524 * 145.71051 * 22 21 20 40 40 H 1.08994 * 109.58142 * 247.17826 * 23 14 12 41 41 H 1.09000 * 109.57276 * 7.44222 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.1471 -2.2864 3.6038 10 1 3.1471 -0.1859 4.8161 11 1 1.1676 -1.5865 4.8165 12 6 2.0323 -0.7104 -1.2305 13 8 2.3499 -1.8793 -1.1686 14 7 2.1286 -0.0469 -2.3996 15 6 1.8453 1.3931 -2.4700 16 6 0.7934 1.6443 -3.5484 17 6 1.2711 1.0429 -4.8733 18 6 1.4749 -0.4585 -4.7106 19 6 0.1373 -1.1403 -4.3553 20 6 -0.3293 -1.6719 -5.7358 21 8 0.9002 -2.0803 -6.3743 22 6 1.8936 -1.0926 -6.0451 23 6 2.5136 -0.7504 -3.6322 24 1 -0.3633 0.6028 0.8323 25 1 -0.3634 -1.0221 0.1058 26 1 -0.3633 0.4195 -0.9382 27 1 0.7081 1.1610 3.4843 28 1 1.4686 1.7386 -1.5074 29 1 2.7581 1.9329 -2.7219 30 1 0.6430 2.7171 -3.6690 31 1 -0.1454 1.1755 -3.2535 32 1 2.2134 1.5076 -5.1638 33 1 0.5237 1.2261 -5.6453 34 1 0.2923 -1.9604 -3.6543 35 1 -0.5741 -0.4176 -3.9557 36 1 -0.8141 -0.8808 -6.3076 37 1 -0.9998 -2.5228 -5.6152 38 1 1.9310 -0.3301 -6.8229 39 1 2.8690 -1.5679 -5.9403 40 1 3.4914 -0.4000 -3.9626 41 1 2.5548 -1.8230 -3.4428 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597751390.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:09 Heat of formation + Delta-G solvation = -109.596060 kcal Electronic energy + Delta-G solvation = -21887.154547 eV Core-core repulsion = 18765.698426 eV Total energy + Delta-G solvation = -3121.456121 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.79753 -40.15730 -37.73948 -35.85992 -34.22685 -32.75863 -32.21945 -30.75661 -27.29145 -27.07887 -26.60463 -23.97078 -23.76978 -22.98194 -20.56620 -19.33583 -18.44458 -17.89116 -17.35168 -16.92517 -16.83815 -16.12414 -16.07444 -15.78793 -15.08255 -14.73061 -14.63159 -14.60354 -14.17216 -13.94635 -13.59522 -13.38038 -13.03589 -12.97892 -12.70621 -12.64642 -12.49742 -12.30173 -12.20063 -12.08140 -11.80410 -11.78093 -11.46579 -11.32631 -11.01801 -10.66987 -10.58908 -10.21734 -9.49116 -8.17860 -6.27398 1.37312 1.39611 1.52602 1.89776 2.17056 2.44861 2.99771 3.11900 3.44211 3.55058 3.82870 4.06527 4.07675 4.13181 4.19587 4.29005 4.34162 4.53424 4.59316 4.68811 4.70203 4.74028 4.76749 4.82799 4.89736 4.93175 4.94900 5.00734 5.02217 5.06924 5.14620 5.29125 5.44505 5.46397 5.67684 5.72524 5.90484 5.91694 6.17402 6.59948 6.78955 7.37461 7.49788 8.88535 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.033258 B = 0.005185 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.689047 B = 5398.807752 C = 5644.981111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.030 3.970 3 H 0.046 0.954 4 C -0.530 4.530 5 H 0.040 0.960 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.954 3.046 9 H -0.282 1.282 10 H -0.270 1.270 11 H -0.274 1.274 12 C 0.521 3.479 13 O -0.595 6.595 14 N -0.614 5.614 15 C 0.098 3.902 16 C -0.130 4.130 17 C -0.096 4.096 18 C -0.099 4.099 19 C -0.145 4.145 20 C 0.051 3.949 21 O -0.403 6.403 22 C 0.060 3.940 23 C 0.124 3.876 24 H 0.073 0.927 25 H 0.014 0.986 26 H 0.045 0.955 27 H 0.266 0.734 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.040 0.960 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.135 5.513 -17.748 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.009 3.991 3 H 0.063 0.937 4 C -0.568 4.568 5 H 0.058 0.942 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.208 1.208 10 H -0.195 1.195 11 H -0.200 1.200 12 C 0.312 3.688 13 O -0.475 6.475 14 N -0.347 5.347 15 C -0.024 4.024 16 C -0.168 4.168 17 C -0.133 4.133 18 C -0.100 4.100 19 C -0.183 4.183 20 C -0.025 4.025 21 O -0.323 6.323 22 C -0.017 4.017 23 C 0.001 3.999 24 H 0.091 0.909 25 H 0.033 0.967 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.005 4.842 -17.706 18.465 hybrid contribution 0.361 -0.653 1.469 1.648 sum -1.644 4.189 -16.237 16.849 Atomic orbital electron populations 1.21461 0.95223 0.99433 1.00651 1.18791 0.94951 0.96062 0.89302 0.93650 1.21252 1.31878 1.12330 0.91387 0.94206 1.25549 0.95128 0.95706 1.01240 1.69942 1.37004 1.23418 1.24336 0.85572 0.78391 0.78598 0.79503 1.20759 1.19541 1.19976 1.21656 0.75175 0.86544 0.85376 1.90498 1.51562 1.19605 1.85867 1.48255 1.68848 1.10387 1.07185 1.21904 1.00008 0.79211 1.01314 1.21918 0.97850 1.02820 0.94228 1.21476 1.03241 0.91063 0.97563 1.21844 0.94969 0.98393 0.94790 1.23158 0.97157 1.00035 0.97901 1.23670 0.87171 1.00621 0.91024 1.88858 1.21028 1.48637 1.73780 1.23249 0.92478 0.91608 0.94366 1.21519 0.97479 0.97170 0.83693 0.90861 0.96699 0.93647 0.92483 0.90200 0.90044 0.87729 0.92165 0.89632 0.89315 0.94123 0.89175 0.89721 0.88930 0.89215 0.89814 0.90343 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.18 8.69 71.98 0.63 -4.56 16 2 C 0.03 1.53 1.79 -12.29 -0.02 1.50 16 3 H 0.05 2.31 6.36 -2.39 -0.02 2.29 16 4 C -0.53 -31.21 8.34 25.60 0.21 -30.99 16 5 H 0.04 2.53 6.99 -2.91 -0.02 2.51 16 6 C 0.02 1.31 5.30 84.66 0.45 1.76 16 7 N -0.91 -50.64 11.39 21.45 0.24 -50.40 16 8 Si 0.95 45.21 29.54 68.60 2.03 47.23 16 9 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 C 0.52 24.81 6.81 87.66 0.60 25.41 16 13 O -0.59 -33.24 15.21 -3.06 -0.05 -33.28 16 14 N -0.61 -21.64 2.81 -820.74 -2.31 -23.95 16 15 C 0.10 2.65 6.05 86.20 0.52 3.17 16 16 C -0.13 -2.51 5.86 30.55 0.18 -2.33 16 17 C -0.10 -1.55 4.47 30.44 0.14 -1.41 16 18 C -0.10 -2.20 0.63 -51.91 -0.03 -2.23 16 19 C -0.14 -3.64 5.85 31.75 0.19 -3.45 16 20 C 0.05 1.07 7.73 72.71 0.56 1.63 16 21 O -0.40 -10.06 11.53 -148.98 -1.72 -11.78 16 22 C 0.06 1.20 7.04 72.17 0.51 1.71 16 23 C 0.12 3.72 4.80 86.12 0.41 4.13 16 24 H 0.07 3.71 6.25 -2.39 -0.01 3.69 16 25 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.04 1.78 7.80 -2.38 -0.02 1.76 16 27 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 28 H 0.08 2.52 5.21 -2.39 -0.01 2.51 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.32 6.26 -2.39 -0.01 1.31 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.04 1.34 7.74 -2.39 -0.02 1.32 16 35 H 0.09 2.12 5.98 -2.39 -0.01 2.11 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.09 1.31 7.68 -2.39 -0.02 1.29 16 39 H 0.08 1.67 7.68 -2.39 -0.02 1.66 16 40 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.06 2.10 6.90 -2.39 -0.02 2.09 16 Total: -1.00 -70.71 313.47 3.55 -67.17 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 1.01 Total: 10.69 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 4.34 Total: -5.68 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -2.06 Total: -74.34 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -1.76 Total: -45.06 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -70.71 3.55 -67.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597751390.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.428 kcal (2) G-P(sol) polarization free energy of solvation -70.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds