Wall clock time and date at job start Mon Mar 30 2020 05:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99707 * 2 1 4 4 H 1.09004 * 112.88720 * 18.65343 * 3 2 1 5 5 C 1.53949 * 113.74603 * 247.22894 * 3 2 1 6 6 C 1.53950 * 87.29535 * 270.25265 * 5 3 2 7 7 H 1.09008 * 113.74633 * 220.78601 * 6 5 3 8 8 N 1.46499 * 113.66341 * 89.73825 * 6 5 3 9 9 C 1.34777 * 119.99665 * 108.09210 * 8 6 5 10 10 O 1.21283 * 119.99990 * 359.71991 * 9 8 6 11 11 C 1.50698 * 119.99538 * 179.72653 * 9 8 6 12 12 H 1.08993 * 109.47916 * 59.99687 * 11 9 8 13 13 C 1.53001 * 109.47207 * 299.99218 * 11 9 8 14 14 C 1.50698 * 109.46944 * 179.97438 * 11 9 8 15 15 H 1.08001 * 120.00089 * 359.97438 * 14 11 9 16 16 C 1.37882 * 120.00151 * 179.97438 * 14 11 9 17 17 N 1.31511 * 119.99699 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 119.99903 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47325 * 60.00275 * 18 16 14 20 20 H 1.48505 * 109.47033 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47222 * 299.99959 * 18 16 14 22 22 C 1.52909 * 86.78227 * 335.26395 * 6 5 3 23 23 C 1.52907 * 121.14177 * 259.18037 * 22 6 5 24 24 C 1.53951 * 86.78403 * 209.38090 * 23 22 6 25 25 C 1.52906 * 121.13749 * 150.61521 * 22 6 5 26 26 H 1.09006 * 109.46978 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47368 * 299.99788 * 1 2 3 28 28 H 1.08996 * 109.47279 * 59.99933 * 1 2 3 29 29 H 1.09002 * 113.58121 * 155.64958 * 5 3 2 30 30 H 1.08996 * 113.57817 * 24.85170 * 5 3 2 31 31 H 0.97001 * 119.99790 * 287.80923 * 8 6 5 32 32 H 1.09001 * 109.47406 * 300.00436 * 13 11 9 33 33 H 1.09001 * 109.47038 * 60.00421 * 13 11 9 34 34 H 1.08995 * 109.47475 * 180.02562 * 13 11 9 35 35 H 0.97004 * 119.99534 * 179.97438 * 17 16 14 36 36 H 1.08997 * 113.66251 * 323.85149 * 23 22 6 37 37 H 1.09002 * 113.66158 * 94.90664 * 23 22 6 38 38 H 1.09000 * 113.57860 * 270.12530 * 24 23 22 39 39 H 1.08994 * 113.57948 * 139.33607 * 24 23 22 40 40 H 1.09002 * 113.66647 * 265.09510 * 25 22 6 41 41 H 1.09003 * 113.66258 * 36.05869 * 25 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3134 2.0797 0.3212 5 6 2.7606 1.6500 -1.2993 6 6 4.0190 1.0510 -0.6453 7 1 4.9279 1.6208 -0.8389 8 7 4.1830 -0.3839 -0.8910 9 6 5.1472 -0.8187 -1.7263 10 8 5.8758 -0.0217 -2.2785 11 6 5.3198 -2.2951 -1.9742 12 1 4.4016 -2.7024 -2.3973 13 6 5.6297 -3.0013 -0.6528 14 6 6.4566 -2.5128 -2.9392 15 1 6.9995 -1.6667 -3.3339 16 6 6.8037 -3.7922 -3.3183 17 7 6.1430 -4.8226 -2.8373 18 14 8.2124 -4.0620 -4.5150 19 1 9.4637 -3.5064 -3.9400 20 1 8.3827 -5.5169 -4.7593 21 1 7.9104 -3.3773 -5.7976 22 6 3.3679 1.3728 0.7002 23 6 3.7824 2.6054 1.5046 24 6 3.4007 1.8053 2.7632 25 6 3.6598 0.5293 1.9417 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 2.8354 2.7208 -1.4889 30 1 2.4111 1.0895 -2.1664 31 1 3.6002 -1.0213 -0.4493 32 1 6.5480 -2.5941 -0.2297 33 1 4.8071 -2.8438 0.0449 34 1 5.7550 -4.0691 -0.8321 35 1 6.3869 -5.7227 -3.1043 36 1 4.8459 2.8342 1.4375 37 1 3.1487 3.4750 1.3301 38 1 2.3591 1.9292 3.0595 39 1 4.0957 1.9388 3.5922 40 1 2.9283 -0.2596 2.1166 41 1 4.6886 0.1733 1.9967 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597763807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:39 Heat of formation + Delta-G solvation = -42.812387 kcal Electronic energy + Delta-G solvation = -21374.150635 eV Core-core repulsion = 18255.590471 eV Total energy + Delta-G solvation = -3118.560164 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.92987 -38.24144 -37.07856 -34.67262 -33.61560 -31.94293 -30.06920 -26.95611 -25.67884 -25.04934 -24.80356 -24.24928 -22.32878 -20.68947 -19.18548 -18.37157 -16.68464 -16.24425 -16.01821 -15.76808 -15.23884 -15.17933 -14.65507 -14.27462 -13.96323 -13.52949 -13.17013 -12.76375 -12.44757 -12.36916 -12.25734 -12.03340 -11.85973 -11.44716 -11.25158 -11.04910 -10.92734 -10.67544 -10.60527 -10.40665 -10.26149 -10.11776 -10.00370 -9.83436 -9.38748 -8.88775 -8.49984 -8.22691 -8.19798 -5.95059 -3.97770 3.38635 3.41290 3.43177 3.49386 3.83135 4.01513 4.48981 4.55093 4.58021 4.69093 4.76938 4.88386 5.04356 5.11730 5.25124 5.32491 5.37901 5.40743 5.56671 5.61297 5.71262 5.77066 5.79609 5.89972 5.98260 6.11598 6.15323 6.33016 6.42044 6.54028 6.74081 6.94735 7.04334 7.16512 7.35888 7.59406 7.85806 8.09324 8.28910 8.63490 9.10940 9.40295 9.67416 11.12521 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027323 B = 0.004873 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.518195 B = 5744.862888 C = 5948.736931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.361 6.361 3 C 0.091 3.909 4 H 0.070 0.930 5 C -0.175 4.175 6 C 0.146 3.854 7 H 0.095 0.905 8 N -0.718 5.718 9 C 0.521 3.479 10 O -0.551 6.551 11 C 0.030 3.970 12 H 0.051 0.949 13 C -0.131 4.131 14 C -0.499 4.499 15 H 0.073 0.927 16 C 0.057 3.943 17 N -0.897 5.897 18 Si 0.900 3.100 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.277 1.277 22 C -0.120 4.120 23 C -0.105 4.105 24 C -0.140 4.140 25 C -0.118 4.118 26 H 0.087 0.913 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.402 0.598 32 H 0.029 0.971 33 H 0.012 0.988 34 H 0.092 0.908 35 H 0.260 0.740 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.605 11.859 10.669 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.279 6.279 3 C 0.033 3.967 4 H 0.088 0.912 5 C -0.214 4.214 6 C 0.039 3.961 7 H 0.113 0.887 8 N -0.370 5.370 9 C 0.311 3.689 10 O -0.428 6.428 11 C 0.009 3.991 12 H 0.069 0.931 13 C -0.189 4.189 14 C -0.537 4.537 15 H 0.091 0.909 16 C -0.143 4.143 17 N -0.537 5.537 18 Si 0.728 3.272 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.121 4.121 23 C -0.143 4.143 24 C -0.177 4.177 25 C -0.155 4.155 26 H 0.106 0.894 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.237 0.763 32 H 0.049 0.951 33 H 0.031 0.969 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.947 12.039 10.230 19.220 hybrid contribution 0.097 -0.260 -0.463 0.540 sum -10.850 11.779 9.767 18.758 Atomic orbital electron populations 1.22793 0.81026 1.02870 0.99632 1.87868 1.19438 1.26174 1.94426 1.22757 0.92842 0.85047 0.96084 0.91189 1.23970 0.98135 1.01288 0.98005 1.21383 0.97301 0.84515 0.92918 0.88670 1.45875 1.36739 1.05592 1.48829 1.21971 0.77484 0.93448 0.76000 1.90508 1.45087 1.57837 1.49334 1.18843 0.99436 0.84965 0.95857 0.93116 1.21722 0.97340 1.04913 0.94920 1.21121 1.15133 0.92831 1.24626 0.90907 1.24950 0.96880 0.95928 0.96543 1.69873 1.41001 0.98419 1.44406 0.86519 0.82605 0.76551 0.81506 1.20251 1.21437 1.20261 1.23184 0.95780 0.98913 0.94200 1.22558 1.01801 0.95112 0.94840 1.22845 1.01203 0.97057 0.96643 1.22527 1.02400 0.96518 0.94081 0.89436 0.94296 0.94109 0.89019 0.90268 0.76307 0.95135 0.96854 0.88950 0.93014 0.89197 0.91359 0.90595 0.91474 0.90793 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.85 101.05 1.10 1.41 16 2 O -0.36 -4.64 9.04 -35.23 -0.32 -4.96 16 3 C 0.09 1.08 4.16 -26.28 -0.11 0.97 16 4 H 0.07 0.68 7.87 -51.93 -0.41 0.28 16 5 C -0.17 -2.37 7.72 -25.75 -0.20 -2.57 16 6 C 0.15 2.33 4.13 -67.48 -0.28 2.05 16 7 H 0.10 1.69 7.46 -51.92 -0.39 1.30 16 8 N -0.72 -13.59 4.84 -53.37 -0.26 -13.84 16 9 C 0.52 12.48 7.15 -10.99 -0.08 12.40 16 10 O -0.55 -14.92 15.06 5.55 0.08 -14.84 16 11 C 0.03 0.78 2.64 -92.92 -0.25 0.54 16 12 H 0.05 1.38 8.14 -51.93 -0.42 0.95 16 13 C -0.13 -3.14 8.87 37.16 0.33 -2.81 16 14 C -0.50 -14.59 8.38 -34.44 -0.29 -14.88 16 15 H 0.07 2.24 6.75 -52.49 -0.35 1.89 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 17 N -0.90 -25.81 11.32 55.43 0.63 -25.18 16 18 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 22 C -0.12 -1.47 0.84 -154.71 -0.13 -1.60 16 23 C -0.11 -1.05 7.84 -26.28 -0.21 -1.26 16 24 C -0.14 -1.34 8.08 -25.75 -0.21 -1.55 16 25 C -0.12 -1.42 7.36 -26.29 -0.19 -1.61 16 26 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.40 7.21 7.01 -40.82 -0.29 6.92 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.01 0.26 7.56 -51.93 -0.39 -0.13 16 34 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.92 7.83 -51.93 -0.41 0.51 16 41 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 330.99 15.07 4.99 4.99 Total: -1.00 -31.86 330.99 -7.26 -39.12 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.76 Total: 4.78 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -0.60 Total: -7.37 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.37 Total: -39.03 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.24 Total: -19.80 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.86 -7.26 -39.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597763807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.694 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds