Wall clock time and date at job start Mon Mar 30 2020 05:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99707 * 2 1 4 4 H 1.09004 * 112.88720 * 18.65343 * 3 2 1 5 5 C 1.53949 * 113.74603 * 247.22894 * 3 2 1 6 6 C 1.53950 * 87.29535 * 270.25265 * 5 3 2 7 7 H 1.09008 * 113.74633 * 220.78601 * 6 5 3 8 8 N 1.46499 * 113.66341 * 89.73825 * 6 5 3 9 9 C 1.34777 * 119.99665 * 108.09210 * 8 6 5 10 10 O 1.21283 * 119.99990 * 359.71991 * 9 8 6 11 11 C 1.50698 * 119.99538 * 179.72653 * 9 8 6 12 12 H 1.08993 * 109.47916 * 59.99687 * 11 9 8 13 13 C 1.53001 * 109.47207 * 299.99218 * 11 9 8 14 14 C 1.50698 * 109.46944 * 179.97438 * 11 9 8 15 15 H 1.08001 * 120.00089 * 359.97438 * 14 11 9 16 16 C 1.37882 * 120.00151 * 179.97438 * 14 11 9 17 17 N 1.31511 * 119.99699 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 119.99903 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47325 * 60.00275 * 18 16 14 20 20 H 1.48505 * 109.47033 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47222 * 299.99959 * 18 16 14 22 22 C 1.52909 * 86.78227 * 335.26395 * 6 5 3 23 23 C 1.52907 * 121.14177 * 259.18037 * 22 6 5 24 24 C 1.53951 * 86.78403 * 209.38090 * 23 22 6 25 25 C 1.52906 * 121.13749 * 150.61521 * 22 6 5 26 26 H 1.09006 * 109.46978 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47368 * 299.99788 * 1 2 3 28 28 H 1.08996 * 109.47279 * 59.99933 * 1 2 3 29 29 H 1.09002 * 113.58121 * 155.64958 * 5 3 2 30 30 H 1.08996 * 113.57817 * 24.85170 * 5 3 2 31 31 H 0.97001 * 119.99790 * 287.80923 * 8 6 5 32 32 H 1.09001 * 109.47406 * 300.00436 * 13 11 9 33 33 H 1.09001 * 109.47038 * 60.00421 * 13 11 9 34 34 H 1.08995 * 109.47475 * 180.02562 * 13 11 9 35 35 H 0.97004 * 119.99534 * 179.97438 * 17 16 14 36 36 H 1.08997 * 113.66251 * 323.85149 * 23 22 6 37 37 H 1.09002 * 113.66158 * 94.90664 * 23 22 6 38 38 H 1.09000 * 113.57860 * 270.12530 * 24 23 22 39 39 H 1.08994 * 113.57948 * 139.33607 * 24 23 22 40 40 H 1.09002 * 113.66647 * 265.09510 * 25 22 6 41 41 H 1.09003 * 113.66258 * 36.05869 * 25 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3134 2.0797 0.3212 5 6 2.7606 1.6500 -1.2993 6 6 4.0190 1.0510 -0.6453 7 1 4.9279 1.6208 -0.8389 8 7 4.1830 -0.3839 -0.8910 9 6 5.1472 -0.8187 -1.7263 10 8 5.8758 -0.0217 -2.2785 11 6 5.3198 -2.2951 -1.9742 12 1 4.4016 -2.7024 -2.3973 13 6 5.6297 -3.0013 -0.6528 14 6 6.4566 -2.5128 -2.9392 15 1 6.9995 -1.6667 -3.3339 16 6 6.8037 -3.7922 -3.3183 17 7 6.1430 -4.8226 -2.8373 18 14 8.2124 -4.0620 -4.5150 19 1 9.4637 -3.5064 -3.9400 20 1 8.3827 -5.5169 -4.7593 21 1 7.9104 -3.3773 -5.7976 22 6 3.3679 1.3728 0.7002 23 6 3.7824 2.6054 1.5046 24 6 3.4007 1.8053 2.7632 25 6 3.6598 0.5293 1.9417 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 2.8354 2.7208 -1.4889 30 1 2.4111 1.0895 -2.1664 31 1 3.6002 -1.0213 -0.4493 32 1 6.5480 -2.5941 -0.2297 33 1 4.8071 -2.8438 0.0449 34 1 5.7550 -4.0691 -0.8321 35 1 6.3869 -5.7227 -3.1043 36 1 4.8459 2.8342 1.4375 37 1 3.1487 3.4750 1.3301 38 1 2.3591 1.9292 3.0595 39 1 4.0957 1.9388 3.5922 40 1 2.9283 -0.2596 2.1166 41 1 4.6886 0.1733 1.9967 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597763807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:39 Heat of formation + Delta-G solvation = -63.402658 kcal Electronic energy + Delta-G solvation = -21375.043496 eV Core-core repulsion = 18255.590471 eV Total energy + Delta-G solvation = -3119.453025 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.01999 -40.03769 -37.95191 -35.96399 -35.70667 -33.56827 -32.03569 -27.74992 -27.21592 -26.62622 -25.88436 -25.34115 -24.05284 -21.81812 -20.95376 -19.46007 -18.29855 -17.96591 -17.32262 -16.82464 -16.65649 -16.55070 -16.11166 -15.69779 -15.43154 -14.85411 -14.59061 -14.51357 -13.86119 -13.49905 -13.31400 -13.21647 -13.04407 -12.96393 -12.79974 -12.69173 -12.60206 -12.23830 -12.12173 -12.00786 -11.92236 -11.34034 -11.16921 -11.07346 -10.96924 -10.59426 -10.33515 -10.27171 -9.76059 -8.14586 -6.25571 1.40413 1.42732 1.51246 1.93444 2.26780 2.46264 2.77965 3.14321 3.47701 3.58606 3.80590 3.85363 3.92903 4.00809 4.29645 4.32058 4.55394 4.56912 4.62273 4.68460 4.73030 4.79376 4.86019 4.90440 4.91756 4.94217 4.99235 4.99687 5.05297 5.12055 5.18632 5.42499 5.48650 5.58234 5.70365 5.79326 5.94763 6.21012 6.35087 6.77117 6.90323 7.39998 7.58491 8.91306 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027323 B = 0.004873 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.518195 B = 5744.862888 C = 5948.736931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.388 6.388 3 C 0.102 3.898 4 H 0.104 0.896 5 C -0.171 4.171 6 C 0.119 3.881 7 H 0.071 0.929 8 N -0.698 5.698 9 C 0.521 3.479 10 O -0.591 6.591 11 C 0.026 3.974 12 H 0.035 0.965 13 C -0.116 4.116 14 C -0.530 4.530 15 H 0.048 0.952 16 C 0.018 3.982 17 N -0.912 5.912 18 Si 0.959 3.041 19 H -0.275 1.275 20 H -0.273 1.273 21 H -0.276 1.276 22 C -0.113 4.113 23 C -0.099 4.099 24 C -0.125 4.125 25 C -0.127 4.127 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.116 0.884 30 H 0.056 0.944 31 H 0.408 0.592 32 H 0.022 0.978 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.265 0.735 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.002 12.937 12.023 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.307 6.307 3 C 0.044 3.956 4 H 0.122 0.878 5 C -0.210 4.210 6 C 0.013 3.987 7 H 0.090 0.910 8 N -0.349 5.349 9 C 0.311 3.689 10 O -0.471 6.471 11 C 0.004 3.996 12 H 0.053 0.947 13 C -0.174 4.174 14 C -0.568 4.568 15 H 0.066 0.934 16 C -0.181 4.181 17 N -0.551 5.551 18 Si 0.784 3.216 19 H -0.201 1.201 20 H -0.198 1.198 21 H -0.202 1.202 22 C -0.114 4.114 23 C -0.137 4.137 24 C -0.162 4.162 25 C -0.165 4.165 26 H 0.109 0.891 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.134 0.866 30 H 0.075 0.925 31 H 0.244 0.756 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.395 13.118 11.623 21.466 hybrid contribution 0.479 -0.607 -0.877 1.169 sum -11.916 12.511 10.746 20.347 Atomic orbital electron populations 1.22979 0.79267 1.03672 1.00927 1.87833 1.21479 1.26968 1.94437 1.22704 0.93098 0.85622 0.94145 0.87803 1.23996 0.96659 1.02224 0.98123 1.21752 0.97742 0.82091 0.97073 0.91041 1.45592 1.34874 1.07552 1.46869 1.21549 0.78278 0.92400 0.76697 1.90478 1.46981 1.58343 1.51316 1.18773 0.97729 0.86852 0.96203 0.94711 1.21520 0.98234 1.03055 0.94580 1.21246 1.16556 0.92624 1.26367 0.93376 1.25638 0.99061 0.95479 0.97890 1.69955 1.41707 0.98696 1.44720 0.85610 0.79590 0.77149 0.79262 1.20092 1.19756 1.20192 1.23252 0.95351 1.00612 0.92195 1.22589 1.02048 0.95014 0.94052 1.22801 1.02533 0.94484 0.96376 1.22548 1.01163 0.97721 0.95055 0.89063 0.92134 0.93577 0.86569 0.92512 0.75578 0.95851 0.93565 0.90946 0.92564 0.89757 0.88845 0.88753 0.90569 0.91155 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.85 113.37 1.23 1.68 16 2 O -0.39 -9.22 9.04 -148.98 -1.35 -10.56 16 3 C 0.10 2.14 4.16 30.89 0.13 2.27 16 4 H 0.10 1.53 7.87 -2.38 -0.02 1.51 16 5 C -0.17 -4.43 7.72 31.23 0.24 -4.19 16 6 C 0.12 3.81 4.13 45.28 0.19 4.00 16 7 H 0.07 2.61 7.46 -2.38 -0.02 2.60 16 8 N -0.70 -26.93 4.84 -441.15 -2.14 -29.07 16 9 C 0.52 25.93 7.15 87.66 0.63 26.55 16 10 O -0.59 -33.49 15.06 -3.04 -0.05 -33.54 16 11 C 0.03 1.38 2.64 -12.29 -0.03 1.34 16 12 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 13 C -0.12 -5.64 8.87 71.98 0.64 -5.00 16 14 C -0.53 -32.06 8.38 25.60 0.21 -31.84 16 15 H 0.05 3.10 6.75 -2.91 -0.02 3.08 16 16 C 0.02 1.06 5.30 84.66 0.45 1.51 16 17 N -0.91 -52.84 11.32 21.45 0.24 -52.60 16 18 Si 0.96 46.23 29.54 68.60 2.03 48.25 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 22 C -0.11 -2.57 0.84 -52.31 -0.04 -2.61 16 23 C -0.10 -1.69 7.84 30.88 0.24 -1.44 16 24 C -0.12 -1.96 8.08 31.23 0.25 -1.71 16 25 C -0.13 -2.86 7.36 30.88 0.23 -2.64 16 26 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.41 14.70 7.01 -92.71 -0.65 14.05 16 32 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.88 7.56 -2.39 -0.02 1.86 16 34 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 35 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.62 7.83 -2.39 -0.02 1.61 16 41 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -70.92 330.99 3.46 -67.47 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.36 Total: 22.14 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 4.36 Total: -12.09 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -1.89 Total: -81.67 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -1.39 Total: -44.10 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -70.92 3.46 -67.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597763807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.063 kcal (2) G-P(sol) polarization free energy of solvation -70.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds