Wall clock time and date at job start Mon Mar 30 2020 05:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47154 * 2 1 4 4 C 1.50701 * 109.46402 * 240.00375 * 2 1 3 5 5 H 1.08000 * 119.99783 * 239.99811 * 4 2 1 6 6 C 1.37873 * 120.00321 * 60.00337 * 4 2 1 7 7 N 1.31520 * 119.99982 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00470 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47186 * 89.99897 * 8 6 4 10 10 H 1.48496 * 109.47577 * 210.00007 * 8 6 4 11 11 H 1.48509 * 109.47103 * 329.99936 * 8 6 4 12 12 C 1.50702 * 109.47238 * 120.00590 * 2 1 3 13 13 O 1.21280 * 119.99809 * 93.31362 * 12 2 1 14 14 N 1.34762 * 119.99861 * 273.31445 * 12 2 1 15 15 C 1.47158 * 120.98367 * 185.09905 * 14 12 2 16 16 C 1.53296 * 108.38768 * 129.44008 * 15 14 12 17 17 O 1.42957 * 109.22002 * 52.30290 * 16 15 14 18 18 C 1.42957 * 114.17110 * 297.41854 * 17 16 15 19 19 H 1.08999 * 109.51226 * 302.66218 * 18 17 16 20 20 C 1.52999 * 109.51826 * 182.55810 * 18 17 16 21 21 C 1.53776 * 113.61670 * 159.13395 * 20 18 17 22 22 C 1.53955 * 87.01874 * 220.04985 * 21 20 18 23 23 C 1.53771 * 87.11453 * 25.36556 * 22 21 20 24 24 C 1.47158 * 120.98589 * 4.81193 * 14 12 2 25 25 H 1.09001 * 109.47349 * 174.33459 * 1 2 3 26 26 H 1.09002 * 109.46743 * 294.32769 * 1 2 3 27 27 H 1.08994 * 109.47334 * 54.32749 * 1 2 3 28 28 H 0.96998 * 120.00388 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.67877 * 249.16593 * 15 14 12 30 30 H 1.08997 * 109.67740 * 9.67439 * 15 14 12 31 31 H 1.08997 * 109.51071 * 172.22747 * 16 15 14 32 32 H 1.09001 * 109.51131 * 292.32964 * 16 15 14 33 33 H 1.08996 * 112.84874 * 290.33575 * 20 18 17 34 34 H 1.08997 * 113.61894 * 334.56826 * 21 20 18 35 35 H 1.09002 * 113.61410 * 105.47040 * 21 20 18 36 36 H 1.09001 * 113.53864 * 270.80681 * 22 21 20 37 37 H 1.09003 * 113.66221 * 139.93722 * 22 21 20 38 38 H 1.09003 * 113.61464 * 220.09376 * 23 22 21 39 39 H 1.09000 * 113.69228 * 89.19470 * 23 22 21 40 40 H 1.08997 * 109.67802 * 350.28747 * 24 14 12 41 41 H 1.09002 * 109.67847 * 110.83687 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3221 -1.1193 -4.0081 9 1 1.3443 -2.1612 -4.4126 10 1 2.4869 -0.1400 -5.1121 11 1 3.6305 -1.7565 -3.7123 12 6 2.0324 -0.7105 1.2304 13 8 2.2918 -1.8944 1.1835 14 7 2.1934 -0.0305 2.3827 15 6 2.7864 -0.6741 3.5657 16 6 3.9081 0.2267 4.0950 17 8 3.4010 1.5505 4.2798 18 6 2.9525 2.1788 3.0765 19 1 3.7686 2.2069 2.3545 20 6 2.4937 3.6054 3.3851 21 6 2.4758 4.5266 2.1539 22 6 3.0341 5.6298 3.0713 23 6 3.6091 4.5034 3.9460 24 6 1.7871 1.3796 2.4933 25 1 -0.3634 -1.0226 -0.1014 26 1 -0.3633 0.4234 0.9364 27 1 -0.3634 0.5992 -0.8348 28 1 0.7080 1.1612 -3.4843 29 1 2.0245 -0.8020 4.3346 30 1 3.1951 -1.6459 3.2887 31 1 4.2679 -0.1616 5.0478 32 1 4.7281 0.2471 3.3771 33 1 1.5731 3.6372 3.9677 34 1 3.1673 4.2201 1.3691 35 1 1.4737 4.7348 1.7790 36 1 2.2607 6.2163 3.5672 37 1 3.7971 6.2478 2.5980 38 1 3.5206 4.6928 5.0158 39 1 4.6110 4.1895 3.6532 40 1 1.5349 1.7674 1.5064 41 1 0.9229 1.4619 3.1525 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597774683.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:49 Heat of formation + Delta-G solvation = -64.815946 kcal Electronic energy + Delta-G solvation = -21523.140240 eV Core-core repulsion = 18403.625930 eV Total energy + Delta-G solvation = -3119.514310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.12591 -38.65211 -37.35093 -34.16120 -33.81011 -31.57644 -30.33868 -27.83129 -25.74663 -25.21241 -25.05568 -23.63268 -22.03270 -20.81787 -19.54212 -18.40335 -16.66970 -16.43459 -16.02714 -15.81191 -15.19720 -14.99426 -14.79708 -14.52904 -14.05341 -13.57061 -13.07686 -12.75655 -12.56774 -12.41740 -12.39316 -11.98270 -11.63037 -11.43175 -11.22940 -11.03230 -10.83269 -10.70957 -10.65684 -10.48670 -10.31729 -10.29021 -10.13070 -10.04205 -9.82171 -9.00901 -8.61056 -8.33157 -8.02540 -6.06830 -4.09784 3.31594 3.37201 3.40697 3.49069 3.65467 3.76288 4.43467 4.57825 4.67118 4.78327 4.93215 5.06236 5.17532 5.24241 5.25504 5.29519 5.40384 5.60989 5.69044 5.73756 5.76841 5.79161 5.82927 5.92124 5.98004 6.02729 6.11172 6.20447 6.24540 6.49487 6.63690 6.81374 6.94739 7.00350 7.26525 7.41761 7.72822 7.93118 8.04693 8.33347 8.95355 9.15829 9.54988 11.00968 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018943 B = 0.006029 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.793604 B = 4643.094280 C = 5564.238605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.033 3.967 3 H 0.047 0.953 4 C -0.501 4.501 5 H 0.068 0.932 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.525 3.475 13 O -0.546 6.546 14 N -0.630 5.630 15 C 0.076 3.924 16 C 0.051 3.949 17 O -0.378 6.378 18 C 0.087 3.913 19 H 0.064 0.936 20 C -0.101 4.101 21 C -0.133 4.133 22 C -0.144 4.144 23 C -0.125 4.125 24 C 0.083 3.917 25 H 0.035 0.965 26 H 0.011 0.989 27 H 0.091 0.909 28 H 0.261 0.739 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.047 8.328 12.692 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.012 3.988 3 H 0.065 0.935 4 C -0.539 4.539 5 H 0.086 0.914 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.317 3.683 13 O -0.422 6.422 14 N -0.367 5.367 15 C -0.048 4.048 16 C -0.027 4.027 17 O -0.297 6.297 18 C 0.028 3.972 19 H 0.082 0.918 20 C -0.120 4.120 21 C -0.171 4.171 22 C -0.181 4.181 23 C -0.162 4.162 24 C -0.041 4.041 25 H 0.055 0.945 26 H 0.030 0.970 27 H 0.110 0.890 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.096 7.859 12.671 15.228 hybrid contribution 0.242 -0.620 -0.992 1.195 sum 3.338 7.239 11.679 14.140 Atomic orbital electron populations 1.21700 0.96100 1.01066 0.99775 1.18888 0.94341 0.96487 0.89101 0.93497 1.21053 1.31354 1.12477 0.89065 0.91356 1.24925 0.95054 0.95017 0.99037 1.69874 1.36920 1.22961 1.23611 0.86453 0.79432 0.79296 0.82046 1.20566 1.21231 1.19826 1.22086 0.75055 0.87386 0.83796 1.90521 1.50861 1.16370 1.84443 1.48429 1.64296 1.11978 1.12006 1.22109 0.96203 0.97997 0.88465 1.22932 0.95307 0.82961 1.01482 1.87886 1.82064 1.28268 1.31493 1.22470 0.96019 0.91839 0.86830 0.91847 1.22519 0.99746 0.91005 0.98719 1.22981 1.02298 0.95566 0.96207 1.22870 1.00497 0.96493 0.98287 1.22772 0.98321 0.95704 0.99447 1.22311 0.96721 0.81480 1.03573 0.94534 0.97017 0.89015 0.92894 0.91767 0.88679 0.88251 0.92897 0.88609 0.89535 0.90762 0.90312 0.91495 0.91567 0.90184 0.87478 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.74 37.16 0.32 -2.72 16 2 C 0.03 0.82 1.79 -92.92 -0.17 0.65 16 3 H 0.05 1.18 6.34 -51.93 -0.33 0.85 16 4 C -0.50 -14.21 8.33 -34.44 -0.29 -14.49 16 5 H 0.07 2.05 7.06 -52.49 -0.37 1.68 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.76 11.38 55.43 0.63 -24.13 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.52 12.39 6.79 -10.99 -0.07 12.32 16 13 O -0.55 -14.56 15.35 5.56 0.09 -14.47 16 14 N -0.63 -11.93 3.03 -172.53 -0.52 -12.45 16 15 C 0.08 1.20 6.62 -3.53 -0.02 1.18 16 16 C 0.05 0.68 6.99 37.31 0.26 0.94 16 17 O -0.38 -5.40 10.21 -35.23 -0.36 -5.76 16 18 C 0.09 1.22 2.51 -26.80 -0.07 1.15 16 19 H 0.06 0.96 7.98 -51.93 -0.41 0.54 16 20 C -0.10 -1.17 3.35 -89.81 -0.30 -1.47 16 21 C -0.13 -1.47 7.63 -25.83 -0.20 -1.67 16 22 C -0.14 -1.36 8.09 -25.83 -0.21 -1.57 16 23 C -0.12 -1.30 7.48 -25.92 -0.19 -1.49 16 24 C 0.08 1.33 5.42 -3.75 -0.02 1.31 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.01 0.23 7.78 -51.93 -0.40 -0.18 16 27 H 0.09 2.32 6.24 -51.93 -0.32 1.99 16 28 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.62 7.12 -51.93 -0.37 1.25 16 31 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.03 7.99 -51.93 -0.41 0.61 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 40 H 0.11 1.84 5.43 -51.93 -0.28 1.56 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 323.63 15.07 4.88 4.88 Total: -1.00 -30.91 323.63 -8.05 -38.96 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.69 Total: 0.61 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.05 Total: -4.30 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.11 Total: -36.58 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.27 Total: -20.23 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.91 -8.05 -38.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597774683.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.858 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds