Wall clock time and date at job start Mon Mar 30 2020 05:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47154 * 2 1 4 4 C 1.50701 * 109.46402 * 240.00375 * 2 1 3 5 5 H 1.08000 * 119.99783 * 239.99811 * 4 2 1 6 6 C 1.37873 * 120.00321 * 60.00337 * 4 2 1 7 7 N 1.31520 * 119.99982 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00470 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47186 * 89.99897 * 8 6 4 10 10 H 1.48496 * 109.47577 * 210.00007 * 8 6 4 11 11 H 1.48509 * 109.47103 * 329.99936 * 8 6 4 12 12 C 1.50702 * 109.47238 * 120.00590 * 2 1 3 13 13 O 1.21280 * 119.99809 * 93.31362 * 12 2 1 14 14 N 1.34762 * 119.99861 * 273.31445 * 12 2 1 15 15 C 1.47158 * 120.98367 * 185.09905 * 14 12 2 16 16 C 1.53296 * 108.38768 * 129.44008 * 15 14 12 17 17 O 1.42957 * 109.22002 * 52.30290 * 16 15 14 18 18 C 1.42957 * 114.17110 * 297.41854 * 17 16 15 19 19 H 1.08999 * 109.51226 * 302.66218 * 18 17 16 20 20 C 1.52999 * 109.51826 * 182.55810 * 18 17 16 21 21 C 1.53776 * 113.61670 * 159.13395 * 20 18 17 22 22 C 1.53955 * 87.01874 * 220.04985 * 21 20 18 23 23 C 1.53771 * 87.11453 * 25.36556 * 22 21 20 24 24 C 1.47158 * 120.98589 * 4.81193 * 14 12 2 25 25 H 1.09001 * 109.47349 * 174.33459 * 1 2 3 26 26 H 1.09002 * 109.46743 * 294.32769 * 1 2 3 27 27 H 1.08994 * 109.47334 * 54.32749 * 1 2 3 28 28 H 0.96998 * 120.00388 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.67877 * 249.16593 * 15 14 12 30 30 H 1.08997 * 109.67740 * 9.67439 * 15 14 12 31 31 H 1.08997 * 109.51071 * 172.22747 * 16 15 14 32 32 H 1.09001 * 109.51131 * 292.32964 * 16 15 14 33 33 H 1.08996 * 112.84874 * 290.33575 * 20 18 17 34 34 H 1.08997 * 113.61894 * 334.56826 * 21 20 18 35 35 H 1.09002 * 113.61410 * 105.47040 * 21 20 18 36 36 H 1.09001 * 113.53864 * 270.80681 * 22 21 20 37 37 H 1.09003 * 113.66221 * 139.93722 * 22 21 20 38 38 H 1.09003 * 113.61464 * 220.09376 * 23 22 21 39 39 H 1.09000 * 113.69228 * 89.19470 * 23 22 21 40 40 H 1.08997 * 109.67802 * 350.28747 * 24 14 12 41 41 H 1.09002 * 109.67847 * 110.83687 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3221 -1.1193 -4.0081 9 1 1.3443 -2.1612 -4.4126 10 1 2.4869 -0.1400 -5.1121 11 1 3.6305 -1.7565 -3.7123 12 6 2.0324 -0.7105 1.2304 13 8 2.2918 -1.8944 1.1835 14 7 2.1934 -0.0305 2.3827 15 6 2.7864 -0.6741 3.5657 16 6 3.9081 0.2267 4.0950 17 8 3.4010 1.5505 4.2798 18 6 2.9525 2.1788 3.0765 19 1 3.7686 2.2069 2.3545 20 6 2.4937 3.6054 3.3851 21 6 2.4758 4.5266 2.1539 22 6 3.0341 5.6298 3.0713 23 6 3.6091 4.5034 3.9460 24 6 1.7871 1.3796 2.4933 25 1 -0.3634 -1.0226 -0.1014 26 1 -0.3633 0.4234 0.9364 27 1 -0.3634 0.5992 -0.8348 28 1 0.7080 1.1612 -3.4843 29 1 2.0245 -0.8020 4.3346 30 1 3.1951 -1.6459 3.2887 31 1 4.2679 -0.1616 5.0478 32 1 4.7281 0.2471 3.3771 33 1 1.5731 3.6372 3.9677 34 1 3.1673 4.2201 1.3691 35 1 1.4737 4.7348 1.7790 36 1 2.2607 6.2163 3.5672 37 1 3.7971 6.2478 2.5980 38 1 3.5206 4.6928 5.0158 39 1 4.6110 4.1895 3.6532 40 1 1.5349 1.7674 1.5064 41 1 0.9229 1.4619 3.1525 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597774683.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:48 Heat of formation + Delta-G solvation = -83.379026 kcal Electronic energy + Delta-G solvation = -21523.945196 eV Core-core repulsion = 18403.625930 eV Total energy + Delta-G solvation = -3120.319266 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.48301 -40.00042 -38.56230 -35.91505 -35.61769 -33.00788 -32.11277 -29.16050 -27.30543 -26.71539 -26.12116 -25.14243 -23.42868 -22.19943 -20.57429 -19.87828 -18.54816 -17.97323 -17.48992 -17.17329 -16.68334 -16.21387 -16.13864 -15.96081 -15.55625 -15.01486 -14.69369 -14.42086 -14.10400 -13.60319 -13.41446 -13.27954 -13.00760 -12.93681 -12.84512 -12.67532 -12.66846 -12.34342 -12.23524 -12.10534 -11.85743 -11.39693 -11.20499 -11.10861 -11.08315 -11.07266 -10.62633 -10.28332 -9.51070 -8.18666 -6.29101 1.38902 1.40188 1.50756 1.79945 1.99771 2.42535 2.65814 3.10926 3.55313 3.75149 3.86311 3.91586 3.92784 4.01330 4.11592 4.17379 4.27717 4.33946 4.50978 4.55418 4.66147 4.73944 4.76081 4.85210 4.90422 4.92568 4.93693 4.98018 5.03051 5.16482 5.19172 5.37826 5.38598 5.53330 5.65404 5.68292 5.86684 6.11468 6.12865 6.46562 6.75519 7.31759 7.41416 8.87607 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018943 B = 0.006029 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.793604 B = 4643.094280 C = 5564.238605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.031 3.969 3 H 0.044 0.956 4 C -0.531 4.531 5 H 0.041 0.959 6 C 0.024 3.976 7 N -0.907 5.907 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.271 1.271 11 H -0.278 1.278 12 C 0.522 3.478 13 O -0.587 6.587 14 N -0.625 5.625 15 C 0.071 3.929 16 C 0.056 3.944 17 O -0.376 6.376 18 C 0.093 3.907 19 H 0.048 0.952 20 C -0.101 4.101 21 C -0.140 4.140 22 C -0.133 4.133 23 C -0.122 4.122 24 C 0.079 3.921 25 H 0.018 0.982 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.267 0.733 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.137 0.863 32 H 0.044 0.956 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.061 9.676 13.969 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.010 3.990 3 H 0.062 0.938 4 C -0.570 4.570 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.545 5.545 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.196 1.196 11 H -0.203 1.203 12 C 0.313 3.687 13 O -0.467 6.467 14 N -0.360 5.360 15 C -0.052 4.052 16 C -0.021 4.021 17 O -0.295 6.295 18 C 0.035 3.965 19 H 0.066 0.934 20 C -0.119 4.119 21 C -0.177 4.177 22 C -0.170 4.170 23 C -0.159 4.159 24 C -0.043 4.043 25 H 0.037 0.963 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.155 0.845 32 H 0.063 0.937 33 H 0.125 0.875 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.108 9.257 13.985 17.057 hybrid contribution 0.233 -1.015 -1.344 1.700 sum 3.341 8.242 12.641 15.456 Atomic orbital electron populations 1.21511 0.95266 0.99779 1.00720 1.18794 0.95015 0.95987 0.89184 0.93796 1.21170 1.32195 1.12432 0.91167 0.94020 1.25557 0.95067 0.95671 1.01259 1.69936 1.36803 1.23295 1.24487 0.85603 0.78605 0.78588 0.79143 1.20157 1.19613 1.20332 1.21748 0.75180 0.86865 0.84858 1.90490 1.52985 1.17900 1.85350 1.48382 1.63018 1.13010 1.11554 1.22371 0.97511 0.97841 0.87442 1.23016 0.93813 0.82205 1.03060 1.87903 1.81900 1.28428 1.31270 1.22435 0.94603 0.92948 0.86549 0.93393 1.22591 1.00731 0.89316 0.99304 1.23005 1.02220 0.96468 0.96034 1.22847 1.00810 0.96004 0.97366 1.22752 0.97495 0.95526 1.00166 1.22510 0.98442 0.79881 1.03496 0.96267 0.93932 0.90550 0.92401 0.89789 0.90104 0.84524 0.93730 0.87459 0.91008 0.90588 0.88769 0.90873 0.90544 0.90856 0.88871 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.50 8.74 71.98 0.63 -4.87 16 2 C 0.03 1.60 1.79 -12.28 -0.02 1.58 16 3 H 0.04 2.26 6.34 -2.39 -0.02 2.24 16 4 C -0.53 -31.02 8.33 25.60 0.21 -30.81 16 5 H 0.04 2.60 7.06 -2.91 -0.02 2.58 16 6 C 0.02 1.36 5.30 84.65 0.45 1.81 16 7 N -0.91 -50.28 11.38 21.45 0.24 -50.03 16 8 Si 0.96 44.73 29.54 68.60 2.03 46.75 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 12 C 0.52 25.16 6.79 87.66 0.60 25.75 16 13 O -0.59 -32.36 15.35 -3.03 -0.05 -32.40 16 14 N -0.63 -23.42 3.03 -818.15 -2.48 -25.90 16 15 C 0.07 2.17 6.62 86.35 0.57 2.74 16 16 C 0.06 1.39 6.99 72.08 0.50 1.90 16 17 O -0.38 -9.82 10.21 -148.98 -1.52 -11.34 16 18 C 0.09 2.49 2.51 30.55 0.08 2.57 16 19 H 0.05 1.44 7.98 -2.39 -0.02 1.42 16 20 C -0.10 -2.13 3.35 -10.27 -0.03 -2.16 16 21 C -0.14 -2.91 7.63 31.18 0.24 -2.67 16 22 C -0.13 -2.19 8.09 31.18 0.25 -1.94 16 23 C -0.12 -2.25 7.48 31.12 0.23 -2.01 16 24 C 0.08 2.45 5.42 86.21 0.47 2.92 16 25 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.04 1.71 7.78 -2.39 -0.02 1.70 16 27 H 0.08 3.89 6.24 -2.39 -0.01 3.87 16 28 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 29 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.08 2.74 7.12 -2.39 -0.02 2.72 16 31 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.07 1.70 7.99 -2.39 -0.02 1.68 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.45 8.10 -2.39 -0.02 1.43 16 40 H 0.09 3.18 5.43 -2.39 -0.01 3.16 16 41 H 0.09 2.35 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -66.99 323.63 3.40 -63.60 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 1.00 Total: 14.53 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 4.17 Total: -5.20 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -2.23 Total: -75.93 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -1.57 Total: -43.75 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -66.99 3.40 -63.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597774683.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.783 kcal (2) G-P(sol) polarization free energy of solvation -66.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds