Wall clock time and date at job start Mon Mar 30 2020 05:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47457 * 2 1 4 4 C 1.50705 * 109.47285 * 120.00200 * 2 1 3 5 5 H 1.07999 * 120.00179 * 119.99562 * 4 2 1 6 6 C 1.37875 * 119.99306 * 300.00013 * 4 2 1 7 7 N 1.31510 * 120.00578 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99415 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47339 * 59.99830 * 8 6 4 10 10 H 1.48502 * 109.47224 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47264 * 299.99635 * 8 6 4 12 12 C 1.50706 * 109.46886 * 239.99937 * 2 1 3 13 13 O 1.21280 * 120.00035 * 257.22351 * 12 2 1 14 14 N 1.34770 * 119.99955 * 77.22759 * 12 2 1 15 15 C 1.47161 * 120.88183 * 356.49277 * 14 12 2 16 16 C 1.53171 * 108.67340 * 231.15718 * 15 14 12 17 17 C 1.53006 * 109.61376 * 303.64619 * 16 15 14 18 18 H 1.08997 * 109.46508 * 303.01906 * 17 16 15 19 19 O 1.42896 * 109.46385 * 183.03713 * 17 16 15 20 20 C 1.53219 * 109.51446 * 63.02359 * 17 16 15 21 21 C 1.46544 * 120.88127 * 176.51323 * 14 12 2 22 22 C 1.53268 * 113.62778 * 261.55829 * 21 14 12 23 23 C 1.53870 * 87.02581 * 89.64678 * 22 21 14 24 24 C 1.53244 * 113.66736 * 359.71541 * 21 14 12 25 25 H 1.08999 * 109.47000 * 53.90170 * 1 2 3 26 26 H 1.09000 * 109.47166 * 173.90400 * 1 2 3 27 27 H 1.08998 * 109.47048 * 293.90466 * 1 2 3 28 28 H 0.97005 * 120.00016 * 180.02562 * 7 6 4 29 29 H 1.08993 * 109.60457 * 350.91546 * 15 14 12 30 30 H 1.09003 * 109.60335 * 111.24063 * 15 14 12 31 31 H 1.08994 * 109.44523 * 63.69113 * 16 15 14 32 32 H 1.09001 * 109.44410 * 183.60608 * 16 15 14 33 33 H 0.96705 * 113.99890 * 59.99826 * 19 17 16 34 34 H 1.08995 * 109.55199 * 181.23422 * 20 17 16 35 35 H 1.09003 * 109.54991 * 60.95887 * 20 17 16 36 36 H 1.08997 * 113.64467 * 204.20402 * 22 21 14 37 37 H 1.09005 * 113.63839 * 335.09647 * 22 21 14 38 38 H 1.08999 * 113.59952 * 139.66601 * 23 22 21 39 39 H 1.08997 * 113.60738 * 270.52833 * 23 22 21 40 40 H 1.09005 * 113.64107 * 24.85184 * 24 21 14 41 41 H 1.08995 * 113.64266 * 155.74264 * 24 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8063 -1.1210 4.0081 10 1 1.8270 -0.4200 5.2205 11 1 1.8258 -2.5202 4.0077 12 6 2.0323 -0.7105 -1.2305 13 8 2.4534 -1.8447 -1.1464 14 7 2.0136 -0.0854 -2.4243 15 6 1.4368 1.2614 -2.5628 16 6 0.4331 1.2485 -3.7198 17 6 1.1266 0.7673 -4.9960 18 1 1.9821 1.4084 -5.2083 19 8 0.2067 0.8236 -6.0880 20 6 1.6051 -0.6757 -4.8055 21 6 2.5667 -0.7289 -3.6191 22 6 3.9903 -0.2738 -3.9587 23 6 4.4853 -1.4215 -3.0614 24 6 3.1446 -2.1234 -3.3549 25 1 -0.3633 0.6055 -0.8304 26 1 -0.3633 -1.0218 -0.1091 27 1 -0.3633 0.4164 0.9395 28 1 0.7095 1.1618 3.4844 29 1 0.9274 1.5377 -1.6398 30 1 2.2301 1.9793 -2.7717 31 1 -0.3901 0.5762 -3.4785 32 1 0.0454 2.2553 -3.8750 33 1 -0.1377 1.7094 -6.2668 34 1 2.1185 -1.0117 -5.7063 35 1 0.7488 -1.3212 -4.6100 36 1 4.2498 -0.3978 -5.0100 37 1 4.2353 0.7170 -3.5760 38 1 5.3517 -1.9469 -3.4631 39 1 4.6092 -1.1365 -2.0166 40 1 2.7111 -2.6188 -2.4860 41 1 3.1679 -2.7615 -4.2383 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597792136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:06 Heat of formation + Delta-G solvation = -46.941066 kcal Electronic energy + Delta-G solvation = -22157.359163 eV Core-core repulsion = 19038.619966 eV Total energy + Delta-G solvation = -3118.739197 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.84279 -37.80469 -36.89661 -34.94418 -33.59998 -31.44877 -30.15174 -29.37204 -25.47306 -25.14233 -24.51123 -23.15232 -22.31673 -20.52005 -19.74623 -17.76425 -17.30337 -16.44511 -16.09913 -15.29446 -14.87190 -14.66939 -14.44029 -14.26305 -13.83390 -13.51380 -13.48344 -12.89574 -12.56045 -12.26393 -12.13421 -11.69269 -11.59801 -11.22873 -11.21215 -10.98424 -10.74779 -10.73689 -10.65001 -10.51311 -10.24623 -10.14393 -9.98226 -9.87598 -9.75160 -9.03254 -8.42609 -8.10881 -7.74335 -6.05492 -4.09168 3.34710 3.37474 3.40825 3.51749 3.58666 4.15357 4.44282 4.65292 4.79793 4.94216 5.05493 5.15079 5.21156 5.27576 5.35169 5.39952 5.51808 5.77527 5.82874 5.84690 5.96268 5.97101 6.04883 6.07099 6.14929 6.24024 6.29913 6.56916 6.60423 6.73809 6.76750 6.86382 6.94306 7.40879 7.46723 7.56249 7.74500 7.97129 8.10063 8.35542 8.97825 9.26187 9.56195 11.01632 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026091 B = 0.006271 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.917004 B = 4463.992638 C = 5194.426253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.031 3.969 3 H 0.047 0.953 4 C -0.500 4.500 5 H 0.072 0.928 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.531 3.469 13 O -0.527 6.527 14 N -0.605 5.605 15 C 0.109 3.891 16 C -0.165 4.165 17 C 0.107 3.893 18 H 0.055 0.945 19 O -0.570 6.570 20 C -0.103 4.103 21 C 0.152 3.848 22 C -0.151 4.151 23 C -0.128 4.128 24 C -0.183 4.183 25 H 0.016 0.984 26 H 0.030 0.970 27 H 0.096 0.904 28 H 0.262 0.738 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.375 0.625 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.082 0.918 40 H 0.155 0.845 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.555 3.276 -14.008 14.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.010 3.990 3 H 0.065 0.935 4 C -0.538 4.538 5 H 0.090 0.910 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.201 1.201 12 C 0.324 3.676 13 O -0.405 6.405 14 N -0.339 5.339 15 C -0.014 4.014 16 C -0.204 4.204 17 C 0.048 3.952 18 H 0.073 0.927 19 O -0.375 6.375 20 C -0.142 4.142 21 C 0.066 3.934 22 C -0.189 4.189 23 C -0.166 4.166 24 C -0.219 4.219 25 H 0.035 0.965 26 H 0.049 0.951 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.123 0.877 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.221 0.779 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.171 0.829 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.829 2.136 -13.794 13.983 hybrid contribution 0.186 0.490 0.636 0.824 sum 1.014 2.626 -13.158 13.456 Atomic orbital electron populations 1.21809 0.96344 0.99078 1.02073 1.18894 0.94180 0.96658 0.89242 0.93502 1.21071 1.31093 1.12647 0.88981 0.90998 1.24932 0.95099 0.95047 0.99079 1.69846 1.37014 1.23033 1.23682 0.86514 0.79225 0.79797 0.81657 1.20238 1.21378 1.20147 1.22030 0.75344 0.86391 0.83809 1.90090 1.47314 1.18949 1.84109 1.47910 1.61117 1.17235 1.07637 1.21742 0.95695 0.84100 0.99848 1.22623 0.99792 1.02070 0.95900 1.21816 0.90637 0.97501 0.85246 0.92739 1.86519 1.63941 1.34758 1.52312 1.21717 0.99636 0.95236 0.97579 1.21030 0.91043 0.96119 0.85239 1.23393 0.96407 0.99364 0.99782 1.22751 0.97043 0.96746 1.00047 1.24364 0.96576 0.95613 1.05303 0.96520 0.95092 0.88541 0.92868 0.87680 0.92175 0.90529 0.90793 0.77870 0.90641 0.90901 0.90121 0.91722 0.92483 0.89930 0.82856 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.74 37.16 0.32 -2.76 16 2 C 0.03 0.76 1.77 -92.92 -0.16 0.59 16 3 H 0.05 1.17 7.21 -51.93 -0.37 0.79 16 4 C -0.50 -13.82 8.35 -34.44 -0.29 -14.10 16 5 H 0.07 2.09 6.89 -52.49 -0.36 1.72 16 6 C 0.06 1.61 5.29 -17.82 -0.09 1.52 16 7 N -0.90 -24.68 11.29 55.43 0.63 -24.05 16 8 Si 0.90 21.53 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.53 11.76 6.37 -10.99 -0.07 11.69 16 13 O -0.53 -12.77 10.78 5.56 0.06 -12.71 16 14 N -0.60 -10.75 2.81 -157.99 -0.44 -11.20 16 15 C 0.11 1.63 5.85 -3.59 -0.02 1.61 16 16 C -0.17 -2.05 5.64 -26.64 -0.15 -2.20 16 17 C 0.11 1.30 3.41 -26.61 -0.09 1.21 16 18 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 19 O -0.57 -6.61 13.32 -35.23 -0.47 -7.08 16 20 C -0.10 -1.44 4.91 -26.72 -0.13 -1.57 16 21 C 0.15 2.40 1.07 -131.63 -0.14 2.26 16 22 C -0.15 -2.15 7.39 -26.14 -0.19 -2.34 16 23 C -0.13 -2.09 7.59 -25.67 -0.19 -2.29 16 24 C -0.18 -3.10 6.73 -26.00 -0.17 -3.27 16 25 H 0.02 0.31 6.24 -51.93 -0.32 -0.01 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.10 2.43 5.93 -51.93 -0.31 2.12 16 28 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.11 1.71 4.38 -51.93 -0.23 1.48 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.37 2.66 9.08 45.56 0.41 3.07 16 34 H 0.07 0.97 7.99 -51.93 -0.41 0.56 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.08 0.98 7.99 -51.93 -0.42 0.57 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.59 7.19 -51.93 -0.37 1.22 16 40 H 0.16 3.17 4.43 -57.23 -0.25 2.91 16 41 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 311.04 15.07 4.69 4.69 Total: -1.00 -29.84 311.04 -7.53 -37.36 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.58 Total: 6.16 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -1.39 Total: -9.68 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.18 Total: -35.25 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.41 Total: -19.79 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.84 -7.53 -37.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597792136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.579 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds