Wall clock time and date at job start Mon Mar 30 2020 05:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47457 * 2 1 4 4 C 1.50705 * 109.47285 * 120.00200 * 2 1 3 5 5 H 1.07999 * 120.00179 * 119.99562 * 4 2 1 6 6 C 1.37875 * 119.99306 * 300.00013 * 4 2 1 7 7 N 1.31510 * 120.00578 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99415 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47339 * 59.99830 * 8 6 4 10 10 H 1.48502 * 109.47224 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47264 * 299.99635 * 8 6 4 12 12 C 1.50706 * 109.46886 * 239.99937 * 2 1 3 13 13 O 1.21280 * 120.00035 * 257.22351 * 12 2 1 14 14 N 1.34770 * 119.99955 * 77.22759 * 12 2 1 15 15 C 1.47161 * 120.88183 * 356.49277 * 14 12 2 16 16 C 1.53171 * 108.67340 * 231.15718 * 15 14 12 17 17 C 1.53006 * 109.61376 * 303.64619 * 16 15 14 18 18 H 1.08997 * 109.46508 * 303.01906 * 17 16 15 19 19 O 1.42896 * 109.46385 * 183.03713 * 17 16 15 20 20 C 1.53219 * 109.51446 * 63.02359 * 17 16 15 21 21 C 1.46544 * 120.88127 * 176.51323 * 14 12 2 22 22 C 1.53268 * 113.62778 * 261.55829 * 21 14 12 23 23 C 1.53870 * 87.02581 * 89.64678 * 22 21 14 24 24 C 1.53244 * 113.66736 * 359.71541 * 21 14 12 25 25 H 1.08999 * 109.47000 * 53.90170 * 1 2 3 26 26 H 1.09000 * 109.47166 * 173.90400 * 1 2 3 27 27 H 1.08998 * 109.47048 * 293.90466 * 1 2 3 28 28 H 0.97005 * 120.00016 * 180.02562 * 7 6 4 29 29 H 1.08993 * 109.60457 * 350.91546 * 15 14 12 30 30 H 1.09003 * 109.60335 * 111.24063 * 15 14 12 31 31 H 1.08994 * 109.44523 * 63.69113 * 16 15 14 32 32 H 1.09001 * 109.44410 * 183.60608 * 16 15 14 33 33 H 0.96705 * 113.99890 * 59.99826 * 19 17 16 34 34 H 1.08995 * 109.55199 * 181.23422 * 20 17 16 35 35 H 1.09003 * 109.54991 * 60.95887 * 20 17 16 36 36 H 1.08997 * 113.64467 * 204.20402 * 22 21 14 37 37 H 1.09005 * 113.63839 * 335.09647 * 22 21 14 38 38 H 1.08999 * 113.59952 * 139.66601 * 23 22 21 39 39 H 1.08997 * 113.60738 * 270.52833 * 23 22 21 40 40 H 1.09005 * 113.64107 * 24.85184 * 24 21 14 41 41 H 1.08995 * 113.64266 * 155.74264 * 24 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8063 -1.1210 4.0081 10 1 1.8270 -0.4200 5.2205 11 1 1.8258 -2.5202 4.0077 12 6 2.0323 -0.7105 -1.2305 13 8 2.4534 -1.8447 -1.1464 14 7 2.0136 -0.0854 -2.4243 15 6 1.4368 1.2614 -2.5628 16 6 0.4331 1.2485 -3.7198 17 6 1.1266 0.7673 -4.9960 18 1 1.9821 1.4084 -5.2083 19 8 0.2067 0.8236 -6.0880 20 6 1.6051 -0.6757 -4.8055 21 6 2.5667 -0.7289 -3.6191 22 6 3.9903 -0.2738 -3.9587 23 6 4.4853 -1.4215 -3.0614 24 6 3.1446 -2.1234 -3.3549 25 1 -0.3633 0.6055 -0.8304 26 1 -0.3633 -1.0218 -0.1091 27 1 -0.3633 0.4164 0.9395 28 1 0.7095 1.1618 3.4844 29 1 0.9274 1.5377 -1.6398 30 1 2.2301 1.9793 -2.7717 31 1 -0.3901 0.5762 -3.4785 32 1 0.0454 2.2553 -3.8750 33 1 -0.1377 1.7094 -6.2668 34 1 2.1185 -1.0117 -5.7063 35 1 0.7488 -1.3212 -4.6100 36 1 4.2498 -0.3978 -5.0100 37 1 4.2353 0.7170 -3.5760 38 1 5.3517 -1.9469 -3.4631 39 1 4.6092 -1.1365 -2.0166 40 1 2.7111 -2.6188 -2.4860 41 1 3.1679 -2.7615 -4.2383 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597792136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:06 Heat of formation + Delta-G solvation = -67.385918 kcal Electronic energy + Delta-G solvation = -22158.245718 eV Core-core repulsion = 19038.619966 eV Total energy + Delta-G solvation = -3119.625752 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.21369 -39.15936 -38.10965 -36.31297 -35.47135 -32.84515 -31.91252 -30.53947 -27.30142 -26.61102 -25.87338 -24.49838 -23.78596 -21.65674 -21.29425 -19.16185 -18.30209 -18.26363 -17.77375 -16.78276 -16.54514 -16.07488 -15.61146 -15.38168 -15.32744 -15.02339 -14.76791 -14.44844 -14.04388 -13.72211 -13.52989 -13.20299 -12.90879 -12.76182 -12.68809 -12.53948 -12.42389 -12.33462 -12.28618 -12.01889 -11.80321 -11.73086 -11.41473 -11.08371 -11.00786 -10.77662 -10.50598 -9.55646 -9.35082 -8.15295 -6.25692 1.40582 1.41881 1.50146 1.90185 2.10229 2.44943 3.14037 3.24282 3.47063 3.68896 3.78668 3.97414 4.02578 4.09517 4.18908 4.23017 4.32773 4.46082 4.64398 4.73009 4.75539 4.80921 4.87224 4.88305 4.92688 4.96367 5.02039 5.03373 5.04022 5.24336 5.30724 5.35663 5.48786 5.52051 5.73226 5.92570 6.09616 6.21381 6.63372 6.81918 6.93850 7.41032 7.61085 8.89988 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026091 B = 0.006271 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.917004 B = 4463.992638 C = 5194.426253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.030 3.970 3 H 0.038 0.962 4 C -0.526 4.526 5 H 0.047 0.953 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.275 1.275 11 H -0.279 1.279 12 C 0.526 3.474 13 O -0.559 6.559 14 N -0.599 5.599 15 C 0.102 3.898 16 C -0.157 4.157 17 C 0.114 3.886 18 H 0.076 0.924 19 O -0.581 6.581 20 C -0.100 4.100 21 C 0.146 3.854 22 C -0.130 4.130 23 C -0.133 4.133 24 C -0.189 4.189 25 H 0.049 0.951 26 H 0.016 0.984 27 H 0.074 0.926 28 H 0.265 0.735 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.108 0.892 33 H 0.396 0.604 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.115 0.885 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.116 0.884 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 4.646 -16.219 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.009 3.991 3 H 0.056 0.944 4 C -0.564 4.564 5 H 0.065 0.935 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.199 1.199 11 H -0.204 1.204 12 C 0.318 3.682 13 O -0.440 6.440 14 N -0.332 5.332 15 C -0.020 4.020 16 C -0.196 4.196 17 C 0.056 3.944 18 H 0.093 0.907 19 O -0.390 6.390 20 C -0.139 4.139 21 C 0.060 3.940 22 C -0.168 4.168 23 C -0.171 4.171 24 C -0.225 4.225 25 H 0.068 0.932 26 H 0.035 0.965 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.127 0.873 33 H 0.246 0.754 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.133 0.867 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.133 0.867 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.009 3.555 -16.042 16.462 hybrid contribution 0.111 0.059 1.285 1.291 sum 1.120 3.615 -14.757 15.235 Atomic orbital electron populations 1.21610 0.95533 0.98556 1.02172 1.18779 0.94828 0.95854 0.89653 0.94405 1.21233 1.31609 1.12511 0.91087 0.93480 1.25556 0.95215 0.95729 1.01299 1.69923 1.37128 1.23511 1.24359 0.85686 0.78702 0.78682 0.79009 1.20095 1.19937 1.20419 1.21587 0.75698 0.86063 0.84823 1.90154 1.48715 1.20072 1.85026 1.47840 1.60252 1.18102 1.06987 1.21966 0.96957 0.82781 1.00345 1.22584 0.98314 1.03712 0.94970 1.21673 0.91389 0.96234 0.85148 0.90652 1.86477 1.63924 1.36894 1.51658 1.21666 0.98571 0.96632 0.97014 1.21201 0.92661 0.95255 0.84853 1.23327 0.94048 0.98397 1.01051 1.22677 0.97613 0.98268 0.98511 1.24226 0.97117 0.96559 1.04643 0.93220 0.96475 0.90778 0.92569 0.89439 0.89887 0.92508 0.87330 0.75395 0.88813 0.92946 0.86717 0.91436 0.90545 0.93866 0.86743 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 8.74 71.98 0.63 -5.03 16 2 C 0.03 1.50 1.77 -12.28 -0.02 1.48 16 3 H 0.04 1.94 7.21 -2.39 -0.02 1.93 16 4 C -0.53 -30.32 8.35 25.60 0.21 -30.11 16 5 H 0.05 2.89 6.89 -2.91 -0.02 2.87 16 6 C 0.02 1.18 5.29 84.65 0.45 1.63 16 7 N -0.91 -50.74 11.29 21.45 0.24 -50.50 16 8 Si 0.95 44.88 29.54 68.60 2.03 46.90 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 C 0.53 24.14 6.37 87.66 0.56 24.70 16 13 O -0.56 -28.69 10.78 -3.03 -0.03 -28.72 16 14 N -0.60 -21.10 2.81 -772.17 -2.17 -23.27 16 15 C 0.10 2.84 5.85 86.31 0.50 3.34 16 16 C -0.16 -3.42 5.64 30.65 0.17 -3.25 16 17 C 0.11 2.33 3.41 30.67 0.10 2.43 16 18 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 19 O -0.58 -11.10 13.32 -148.98 -1.98 -13.08 16 20 C -0.10 -2.53 4.91 30.60 0.15 -2.38 16 21 C 0.15 4.37 1.07 3.70 0.00 4.37 16 22 C -0.13 -3.32 7.39 30.98 0.23 -3.09 16 23 C -0.13 -4.27 7.59 31.28 0.24 -4.03 16 24 C -0.19 -6.37 6.73 31.07 0.21 -6.16 16 25 H 0.05 1.93 6.24 -2.39 -0.01 1.92 16 26 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 3.81 5.93 -2.39 -0.01 3.80 16 28 H 0.27 14.03 8.31 -92.70 -0.77 13.26 16 29 H 0.09 2.76 4.38 -2.39 -0.01 2.75 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.40 3.82 9.08 -74.05 -0.67 3.14 16 34 H 0.09 2.03 7.99 -2.39 -0.02 2.02 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.11 2.22 7.99 -2.39 -0.02 2.20 16 37 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.04 1.72 7.19 -2.39 -0.02 1.70 16 40 H 0.12 4.96 4.43 -86.35 -0.38 4.57 16 41 H 0.09 2.47 8.10 -2.39 -0.02 2.45 16 Total: -1.00 -67.40 311.04 1.51 -65.89 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -0.01 Total: 18.86 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 3.44 Total: -16.09 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -1.93 Total: -73.77 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -2.02 Total: -41.80 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -67.40 1.51 -65.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597792136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.494 kcal (2) G-P(sol) polarization free energy of solvation -67.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds