Wall clock time and date at job start Mon Mar 30 2020 05:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47157 * 2 1 4 4 C 1.50706 * 109.46821 * 119.99360 * 2 1 3 5 5 H 1.07999 * 119.99671 * 120.00044 * 4 2 1 6 6 C 1.37874 * 120.00420 * 300.00320 * 4 2 1 7 7 N 1.31513 * 119.99695 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00102 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47001 * 60.00151 * 8 6 4 10 10 H 1.48501 * 109.47301 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47301 * 300.00198 * 8 6 4 12 12 C 1.50695 * 109.47429 * 239.99650 * 2 1 3 13 13 O 1.21282 * 120.00243 * 263.68976 * 12 2 1 14 14 N 1.34778 * 120.00085 * 83.69123 * 12 2 1 15 15 C 1.47163 * 120.88039 * 353.81617 * 14 12 2 16 16 C 1.53163 * 108.66884 * 128.59753 * 15 14 12 17 17 C 1.53005 * 109.62022 * 56.35590 * 16 15 14 18 18 H 1.09004 * 109.46166 * 56.97881 * 17 16 15 19 19 O 1.42898 * 109.46760 * 176.95797 * 17 16 15 20 20 C 1.53213 * 109.51568 * 296.97676 * 17 16 15 21 21 C 1.46538 * 120.88223 * 173.54166 * 14 12 2 22 22 C 1.53285 * 113.62334 * 98.69233 * 21 14 12 23 23 C 1.53865 * 86.93020 * 270.30733 * 22 21 14 24 24 C 1.53246 * 113.66927 * 0.54439 * 21 14 12 25 25 H 1.09004 * 109.46814 * 65.83181 * 1 2 3 26 26 H 1.08999 * 109.47215 * 185.82848 * 1 2 3 27 27 H 1.08995 * 109.47308 * 305.83390 * 1 2 3 28 28 H 0.97005 * 119.99728 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.60268 * 248.35428 * 15 14 12 30 30 H 1.08996 * 109.60578 * 8.84473 * 15 14 12 31 31 H 1.08996 * 109.44825 * 176.40066 * 16 15 14 32 32 H 1.09003 * 109.44924 * 296.34644 * 16 15 14 33 33 H 0.96700 * 114.00493 * 300.00410 * 19 17 16 34 34 H 1.08999 * 109.55399 * 178.75299 * 20 17 16 35 35 H 1.09000 * 109.54583 * 299.03048 * 20 17 16 36 36 H 1.09004 * 113.63251 * 24.82188 * 22 21 14 37 37 H 1.09000 * 113.63933 * 155.79613 * 22 21 14 38 38 H 1.08996 * 113.60090 * 220.37348 * 23 22 21 39 39 H 1.09008 * 113.59660 * 89.51143 * 23 22 21 40 40 H 1.08998 * 113.63837 * 204.16034 * 24 21 14 41 41 H 1.08995 * 113.63560 * 335.13763 * 24 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3211 -1.1201 4.0081 9 1 3.8062 -1.1206 4.0083 10 1 1.8257 -0.4204 5.2205 11 1 1.8257 -2.5200 4.0079 12 6 2.0324 -0.7104 -1.2304 13 8 2.3434 -1.8812 -1.1701 14 7 2.1361 -0.0449 -2.3977 15 6 1.6392 1.3342 -2.5276 16 6 2.7525 2.2027 -3.1210 17 6 3.2103 1.6102 -4.4554 18 1 2.3568 1.5290 -5.1286 19 8 4.1986 2.4607 -5.0400 20 6 3.8084 0.2194 -4.2196 21 6 2.7521 -0.6731 -3.5696 22 6 1.7365 -1.2493 -4.5626 23 6 1.8232 -2.5610 -3.7631 24 6 3.2257 -2.1090 -3.3201 25 1 -0.3633 0.4208 -0.9376 26 1 -0.3633 -1.0223 0.1044 27 1 -0.3634 0.6016 0.8331 28 1 0.7087 1.1616 3.4844 29 1 0.7720 1.3498 -3.1878 30 1 1.3611 1.7168 -1.5456 31 1 2.3775 3.2133 -3.2824 32 1 3.5953 2.2342 -2.4304 33 1 3.8889 3.3592 -5.2181 34 1 4.1145 -0.2124 -5.1724 35 1 4.6725 0.3011 -3.5603 36 1 0.7580 -0.7714 -4.5137 37 1 2.1185 -1.3316 -5.5802 38 1 1.8296 -3.4537 -4.3885 39 1 1.1055 -2.6215 -2.9448 40 1 4.0210 -2.4300 -3.9928 41 1 3.4432 -2.3218 -2.2734 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597792137.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:08 Heat of formation + Delta-G solvation = -50.144081 kcal Electronic energy + Delta-G solvation = -22140.546238 eV Core-core repulsion = 19021.668148 eV Total energy + Delta-G solvation = -3118.878090 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.84377 -37.79300 -36.88148 -34.91063 -33.58392 -31.42635 -30.14412 -29.37648 -25.41670 -25.19357 -24.46994 -23.16310 -22.42574 -20.45950 -19.65081 -17.79613 -17.27799 -16.40227 -16.09936 -15.31158 -14.92830 -14.67869 -14.43749 -14.34580 -13.69105 -13.57131 -13.12104 -12.85479 -12.74549 -12.32234 -12.16379 -11.69178 -11.44149 -11.38194 -11.24556 -10.96281 -10.83876 -10.71627 -10.65003 -10.35333 -10.22247 -10.18425 -9.99002 -9.86113 -9.75992 -8.99925 -8.46176 -8.16293 -7.76358 -6.05864 -4.08648 3.34608 3.37369 3.40929 3.51910 3.59722 4.16129 4.44282 4.65354 4.81217 4.93533 5.06293 5.15231 5.21294 5.27964 5.35076 5.39553 5.52103 5.79329 5.83091 5.85362 5.95922 5.98522 6.03439 6.08564 6.15931 6.23815 6.32375 6.57481 6.62920 6.74629 6.77744 6.83779 6.96473 7.40313 7.45047 7.57882 7.73241 7.96246 8.08121 8.35626 8.96791 9.23915 9.56304 11.02018 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023397 B = 0.006291 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.448412 B = 4450.074376 C = 4965.825471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.031 3.969 3 H 0.047 0.953 4 C -0.501 4.501 5 H 0.070 0.930 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.529 3.471 13 O -0.528 6.528 14 N -0.605 5.605 15 C 0.113 3.887 16 C -0.167 4.167 17 C 0.107 3.893 18 H 0.054 0.946 19 O -0.570 6.570 20 C -0.104 4.104 21 C 0.152 3.848 22 C -0.152 4.152 23 C -0.125 4.125 24 C -0.168 4.168 25 H 0.011 0.989 26 H 0.035 0.965 27 H 0.090 0.910 28 H 0.261 0.739 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.375 0.625 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.911 3.356 -14.107 14.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.010 3.990 3 H 0.065 0.935 4 C -0.539 4.539 5 H 0.088 0.912 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.201 1.201 12 C 0.322 3.678 13 O -0.405 6.405 14 N -0.340 5.340 15 C -0.011 4.011 16 C -0.206 4.206 17 C 0.049 3.951 18 H 0.072 0.928 19 O -0.375 6.375 20 C -0.142 4.142 21 C 0.066 3.934 22 C -0.190 4.190 23 C -0.163 4.163 24 C -0.205 4.205 25 H 0.030 0.970 26 H 0.054 0.946 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.121 0.879 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.221 0.779 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.345 2.286 -13.840 14.092 hybrid contribution -0.141 0.334 0.604 0.704 sum 1.204 2.620 -13.236 13.547 Atomic orbital electron populations 1.21715 0.96224 1.01048 0.99696 1.18905 0.94230 0.96555 0.89266 0.93535 1.21032 1.31308 1.12542 0.89034 0.91207 1.24922 0.95056 0.95020 0.99055 1.69867 1.36974 1.22993 1.23682 0.86519 0.79214 0.79813 0.81680 1.20237 1.21356 1.20142 1.21990 0.75178 0.87073 0.83592 1.90232 1.48847 1.17014 1.84455 1.47947 1.61200 1.14382 1.10464 1.21695 0.95013 0.81445 1.02915 1.22643 1.00421 0.99288 0.98234 1.21807 0.90192 0.90500 0.92648 0.92792 1.86518 1.41234 1.25862 1.83905 1.21715 0.98553 0.92905 1.01040 1.21037 0.92656 0.92859 0.86860 1.23416 0.99522 0.98175 0.97917 1.22711 0.98688 0.95721 0.99166 1.23983 0.96572 0.92362 1.07567 0.97016 0.94551 0.89149 0.92883 0.92176 0.87876 0.90806 0.90396 0.77862 0.90603 0.90807 0.91782 0.90138 0.92608 0.89720 0.91747 0.84142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.61 37.16 0.32 -2.64 16 2 C 0.03 0.76 1.78 -92.92 -0.17 0.60 16 3 H 0.05 1.15 6.60 -51.93 -0.34 0.81 16 4 C -0.50 -13.90 8.33 -34.44 -0.29 -14.19 16 5 H 0.07 2.03 7.00 -52.49 -0.37 1.66 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -24.74 11.39 55.43 0.63 -24.11 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 C 0.53 11.71 6.46 -10.99 -0.07 11.64 16 13 O -0.53 -12.79 10.49 5.56 0.06 -12.73 16 14 N -0.61 -10.77 2.81 -158.00 -0.44 -11.22 16 15 C 0.11 1.67 5.70 -3.60 -0.02 1.65 16 16 C -0.17 -2.11 5.64 -26.64 -0.15 -2.26 16 17 C 0.11 1.31 3.41 -26.62 -0.09 1.22 16 18 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 19 O -0.57 -6.70 13.32 -35.23 -0.47 -7.17 16 20 C -0.10 -1.46 4.91 -26.72 -0.13 -1.59 16 21 C 0.15 2.40 1.07 -131.63 -0.14 2.25 16 22 C -0.15 -2.12 7.40 -26.13 -0.19 -2.32 16 23 C -0.13 -2.01 7.53 -25.83 -0.19 -2.21 16 24 C -0.17 -2.85 6.71 -26.15 -0.18 -3.02 16 25 H 0.01 0.22 7.24 -51.93 -0.38 -0.16 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.09 2.25 6.25 -51.93 -0.32 1.92 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.10 1.68 5.19 -51.93 -0.27 1.41 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.37 2.72 9.08 45.56 0.41 3.14 16 34 H 0.08 0.97 7.99 -51.93 -0.41 0.56 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.96 7.99 -51.93 -0.42 0.55 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.60 6.91 -51.92 -0.36 1.24 16 40 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 41 H 0.14 2.91 4.73 -56.13 -0.27 2.64 16 LS Contribution 312.25 15.07 4.71 4.71 Total: -1.00 -30.02 312.25 -7.59 -37.61 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.66 Total: 5.64 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -1.39 Total: -9.30 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.19 Total: -35.33 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.41 Total: -19.91 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.02 -7.59 -37.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597792137.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.536 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds