Wall clock time and date at job start Mon Mar 30 2020 05:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47157 * 2 1 4 4 C 1.50706 * 109.46821 * 119.99360 * 2 1 3 5 5 H 1.07999 * 119.99671 * 120.00044 * 4 2 1 6 6 C 1.37874 * 120.00420 * 300.00320 * 4 2 1 7 7 N 1.31513 * 119.99695 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00102 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47001 * 60.00151 * 8 6 4 10 10 H 1.48501 * 109.47301 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47301 * 300.00198 * 8 6 4 12 12 C 1.50695 * 109.47429 * 239.99650 * 2 1 3 13 13 O 1.21282 * 120.00243 * 263.68976 * 12 2 1 14 14 N 1.34778 * 120.00085 * 83.69123 * 12 2 1 15 15 C 1.47163 * 120.88039 * 353.81617 * 14 12 2 16 16 C 1.53163 * 108.66884 * 128.59753 * 15 14 12 17 17 C 1.53005 * 109.62022 * 56.35590 * 16 15 14 18 18 H 1.09004 * 109.46166 * 56.97881 * 17 16 15 19 19 O 1.42898 * 109.46760 * 176.95797 * 17 16 15 20 20 C 1.53213 * 109.51568 * 296.97676 * 17 16 15 21 21 C 1.46538 * 120.88223 * 173.54166 * 14 12 2 22 22 C 1.53285 * 113.62334 * 98.69233 * 21 14 12 23 23 C 1.53865 * 86.93020 * 270.30733 * 22 21 14 24 24 C 1.53246 * 113.66927 * 0.54439 * 21 14 12 25 25 H 1.09004 * 109.46814 * 65.83181 * 1 2 3 26 26 H 1.08999 * 109.47215 * 185.82848 * 1 2 3 27 27 H 1.08995 * 109.47308 * 305.83390 * 1 2 3 28 28 H 0.97005 * 119.99728 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.60268 * 248.35428 * 15 14 12 30 30 H 1.08996 * 109.60578 * 8.84473 * 15 14 12 31 31 H 1.08996 * 109.44825 * 176.40066 * 16 15 14 32 32 H 1.09003 * 109.44924 * 296.34644 * 16 15 14 33 33 H 0.96700 * 114.00493 * 300.00410 * 19 17 16 34 34 H 1.08999 * 109.55399 * 178.75299 * 20 17 16 35 35 H 1.09000 * 109.54583 * 299.03048 * 20 17 16 36 36 H 1.09004 * 113.63251 * 24.82188 * 22 21 14 37 37 H 1.09000 * 113.63933 * 155.79613 * 22 21 14 38 38 H 1.08996 * 113.60090 * 220.37348 * 23 22 21 39 39 H 1.09008 * 113.59660 * 89.51143 * 23 22 21 40 40 H 1.08998 * 113.63837 * 204.16034 * 24 21 14 41 41 H 1.08995 * 113.63560 * 335.13763 * 24 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3211 -1.1201 4.0081 9 1 3.8062 -1.1206 4.0083 10 1 1.8257 -0.4204 5.2205 11 1 1.8257 -2.5200 4.0079 12 6 2.0324 -0.7104 -1.2304 13 8 2.3434 -1.8812 -1.1701 14 7 2.1361 -0.0449 -2.3977 15 6 1.6392 1.3342 -2.5276 16 6 2.7525 2.2027 -3.1210 17 6 3.2103 1.6102 -4.4554 18 1 2.3568 1.5290 -5.1286 19 8 4.1986 2.4607 -5.0400 20 6 3.8084 0.2194 -4.2196 21 6 2.7521 -0.6731 -3.5696 22 6 1.7365 -1.2493 -4.5626 23 6 1.8232 -2.5610 -3.7631 24 6 3.2257 -2.1090 -3.3201 25 1 -0.3633 0.4208 -0.9376 26 1 -0.3633 -1.0223 0.1044 27 1 -0.3634 0.6016 0.8331 28 1 0.7087 1.1616 3.4844 29 1 0.7720 1.3498 -3.1878 30 1 1.3611 1.7168 -1.5456 31 1 2.3775 3.2133 -3.2824 32 1 3.5953 2.2342 -2.4304 33 1 3.8889 3.3592 -5.2181 34 1 4.1145 -0.2124 -5.1724 35 1 4.6725 0.3011 -3.5603 36 1 0.7580 -0.7714 -4.5137 37 1 2.1185 -1.3316 -5.5802 38 1 1.8296 -3.4537 -4.3885 39 1 1.1055 -2.6215 -2.9448 40 1 4.0210 -2.4300 -3.9928 41 1 3.4432 -2.3218 -2.2734 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597792137.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:07 Heat of formation + Delta-G solvation = -70.696544 kcal Electronic energy + Delta-G solvation = -22141.437460 eV Core-core repulsion = 19021.668148 eV Total energy + Delta-G solvation = -3119.769312 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.20850 -39.15230 -38.09823 -36.26964 -35.47260 -32.84473 -31.90769 -30.54081 -27.26944 -26.63133 -25.82610 -24.54807 -23.85848 -21.57267 -21.23037 -19.18404 -18.32233 -18.25561 -17.71709 -16.75179 -16.57016 -16.24689 -15.56836 -15.42272 -15.22056 -14.88558 -14.57896 -14.45791 -14.17254 -13.76546 -13.62894 -13.16269 -12.91688 -12.73578 -12.70761 -12.56043 -12.51080 -12.34306 -12.23135 -12.01680 -11.74378 -11.68093 -11.41439 -11.08025 -10.97679 -10.77689 -10.54273 -9.71153 -9.29753 -8.16693 -6.26232 1.39405 1.40859 1.48998 1.91015 2.10960 2.44150 3.13153 3.23915 3.47035 3.69718 3.79203 3.98728 4.03277 4.09792 4.18999 4.25182 4.33093 4.46079 4.67696 4.74086 4.77085 4.82416 4.87227 4.89915 4.90339 4.96376 5.02795 5.03399 5.05991 5.23452 5.31919 5.39694 5.48353 5.54050 5.72335 5.90036 6.05709 6.19446 6.63336 6.80292 6.93794 7.39735 7.58921 8.89344 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023397 B = 0.006291 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.448412 B = 4450.074376 C = 4965.825471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.030 3.970 3 H 0.038 0.962 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.274 1.274 11 H -0.278 1.278 12 C 0.524 3.476 13 O -0.559 6.559 14 N -0.600 5.600 15 C 0.105 3.895 16 C -0.160 4.160 17 C 0.115 3.885 18 H 0.079 0.921 19 O -0.582 6.582 20 C -0.102 4.102 21 C 0.145 3.855 22 C -0.129 4.129 23 C -0.129 4.129 24 C -0.177 4.177 25 H 0.045 0.955 26 H 0.017 0.983 27 H 0.071 0.929 28 H 0.265 0.735 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.050 0.950 33 H 0.396 0.604 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.087 0.913 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.644 4.513 -16.509 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.008 3.992 3 H 0.056 0.944 4 C -0.566 4.566 5 H 0.063 0.937 6 C -0.177 4.177 7 N -0.549 5.549 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.199 1.199 11 H -0.204 1.204 12 C 0.315 3.685 13 O -0.439 6.439 14 N -0.333 5.333 15 C -0.017 4.017 16 C -0.199 4.199 17 C 0.057 3.943 18 H 0.097 0.903 19 O -0.390 6.390 20 C -0.140 4.140 21 C 0.060 3.940 22 C -0.167 4.167 23 C -0.166 4.166 24 C -0.213 4.213 25 H 0.064 0.936 26 H 0.037 0.963 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.126 0.874 32 H 0.069 0.931 33 H 0.246 0.754 34 H 0.114 0.886 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.132 0.868 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.072 3.497 -16.275 16.681 hybrid contribution -0.013 -0.008 1.329 1.329 sum 1.059 3.489 -14.946 15.384 Atomic orbital electron populations 1.21502 0.95378 0.99642 1.00632 1.18796 0.94920 0.95789 0.89653 0.94407 1.21206 1.31831 1.12399 0.91194 0.93723 1.25550 0.95181 0.95704 1.01281 1.69940 1.37097 1.23459 1.24371 0.85695 0.78683 0.78721 0.79045 1.20121 1.19863 1.20385 1.21536 0.75621 0.86762 0.84546 1.90278 1.50188 1.18151 1.85310 1.47870 1.60229 1.15369 1.09852 1.21929 0.96942 0.79977 1.02866 1.22605 0.98644 1.00693 0.97948 1.21676 0.90694 0.89368 0.92605 0.90328 1.86475 1.41506 1.27417 1.83647 1.21679 0.97004 0.94277 1.01058 1.21223 0.93829 0.92511 0.86477 1.23336 0.99190 0.95650 0.98526 1.22632 0.97065 0.98118 0.98804 1.23885 0.97890 0.94095 1.05463 0.93634 0.96349 0.91057 0.92569 0.89229 0.89785 0.87371 0.93078 0.75397 0.88642 0.93253 0.91160 0.86772 0.90656 0.93328 0.89438 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.32 8.61 71.98 0.62 -4.70 16 2 C 0.03 1.49 1.78 -12.29 -0.02 1.46 16 3 H 0.04 1.95 6.60 -2.39 -0.02 1.93 16 4 C -0.53 -30.59 8.33 25.60 0.21 -30.38 16 5 H 0.04 2.75 7.00 -2.91 -0.02 2.73 16 6 C 0.02 1.25 5.30 84.65 0.45 1.70 16 7 N -0.91 -50.94 11.39 21.45 0.24 -50.69 16 8 Si 0.95 45.08 29.54 68.60 2.03 47.10 16 9 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 C 0.52 24.03 6.46 87.66 0.57 24.59 16 13 O -0.56 -28.65 10.49 -3.03 -0.03 -28.68 16 14 N -0.60 -21.13 2.81 -772.17 -2.17 -23.30 16 15 C 0.10 2.93 5.70 86.31 0.49 3.42 16 16 C -0.16 -3.65 5.64 30.65 0.17 -3.47 16 17 C 0.12 2.39 3.41 30.67 0.10 2.50 16 18 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 19 O -0.58 -11.50 13.32 -148.98 -1.98 -13.48 16 20 C -0.10 -2.61 4.91 30.60 0.15 -2.46 16 21 C 0.14 4.33 1.07 3.71 0.00 4.34 16 22 C -0.13 -3.17 7.40 30.98 0.23 -2.94 16 23 C -0.13 -4.00 7.53 31.18 0.23 -3.77 16 24 C -0.18 -5.94 6.71 30.97 0.21 -5.73 16 25 H 0.04 1.76 7.24 -2.38 -0.02 1.74 16 26 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 3.61 6.25 -2.39 -0.01 3.59 16 28 H 0.27 14.09 8.31 -92.70 -0.77 13.32 16 29 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.08 2.69 5.19 -2.39 -0.01 2.67 16 31 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.40 4.06 9.08 -74.06 -0.67 3.38 16 34 H 0.10 2.08 7.99 -2.39 -0.02 2.06 16 35 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.11 2.12 7.99 -2.39 -0.02 2.10 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.05 1.87 6.91 -2.38 -0.02 1.85 16 40 H 0.09 2.48 8.10 -2.39 -0.02 2.46 16 41 H 0.10 4.28 4.73 -68.92 -0.33 3.96 16 Total: -1.00 -68.08 312.25 1.55 -66.53 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.04 Total: 17.95 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 3.42 Total: -15.43 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -1.92 Total: -73.99 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -2.02 Total: -42.16 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -68.08 1.55 -66.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597792137.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.165 kcal (2) G-P(sol) polarization free energy of solvation -68.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds