Wall clock time and date at job start Mon Mar 30 2020 05:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47286 * 2 1 4 4 C 1.50705 * 109.46847 * 119.99807 * 2 1 3 5 5 H 1.07997 * 119.99900 * 119.99912 * 4 2 1 6 6 C 1.37872 * 120.00013 * 299.99755 * 4 2 1 7 7 N 1.31523 * 120.00091 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00040 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47290 * 60.00329 * 8 6 4 10 10 H 1.48506 * 109.47305 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47408 * 300.00519 * 8 6 4 12 12 C 1.50699 * 109.46950 * 239.99635 * 2 1 3 13 13 O 1.21284 * 119.99911 * 262.78657 * 12 2 1 14 14 N 1.34781 * 119.99939 * 82.79802 * 12 2 1 15 15 C 1.47146 * 120.98266 * 5.21231 * 14 12 2 16 16 C 1.53718 * 108.16027 * 129.43591 * 15 14 12 17 17 O 1.42960 * 109.14478 * 52.54298 * 16 15 14 18 18 C 1.42962 * 114.16426 * 297.28691 * 17 16 15 19 19 C 1.47152 * 120.98101 * 185.50255 * 14 12 2 20 20 H 1.09006 * 109.67655 * 110.78460 * 19 14 12 21 21 C 1.53000 * 109.68329 * 350.27162 * 19 14 12 22 22 C 1.53782 * 113.61076 * 283.62360 * 21 19 14 23 23 C 1.53782 * 87.07958 * 220.02037 * 22 21 19 24 24 C 1.53778 * 113.61405 * 186.12608 * 21 19 14 25 25 H 1.09002 * 109.47355 * 186.02592 * 1 2 3 26 26 H 1.08994 * 109.47546 * 306.02659 * 1 2 3 27 27 H 1.08997 * 109.47291 * 66.02875 * 1 2 3 28 28 H 0.96996 * 119.99891 * 179.97438 * 7 6 4 29 29 H 1.08992 * 109.68867 * 249.21886 * 15 14 12 30 30 H 1.09003 * 109.68453 * 9.77431 * 15 14 12 31 31 H 1.08995 * 109.65884 * 292.57252 * 16 15 14 32 32 H 1.08995 * 109.48226 * 172.40075 * 16 15 14 33 33 H 1.08997 * 109.51655 * 302.65844 * 18 17 16 34 34 H 1.09004 * 109.51225 * 182.50162 * 18 17 16 35 35 H 1.09000 * 112.84941 * 54.92567 * 21 19 14 36 36 H 1.09001 * 113.61560 * 334.56628 * 22 21 19 37 37 H 1.08997 * 113.61391 * 105.47251 * 22 21 19 38 38 H 1.09005 * 113.60918 * 270.88161 * 23 22 21 39 39 H 1.08997 * 113.61576 * 139.98711 * 23 22 21 40 40 H 1.09000 * 113.61793 * 254.52533 * 24 21 19 41 41 H 1.08999 * 113.61398 * 25.43371 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8298 2.6034 8 14 2.3223 -1.1194 4.0080 9 1 3.8074 -1.1188 4.0078 10 1 1.8267 -0.4197 5.2205 11 1 1.8280 -2.5197 4.0083 12 6 2.0323 -0.7105 -1.2304 13 8 2.3587 -1.8768 -1.1664 14 7 2.1189 -0.0497 -2.4019 15 6 1.8379 1.3925 -2.4808 16 6 3.0088 2.0695 -3.2112 17 8 3.2374 1.3990 -4.4529 18 6 3.6249 0.0298 -4.3160 19 6 2.4911 -0.7506 -3.6411 20 1 1.6305 -0.7985 -4.3084 21 6 2.9654 -2.1669 -3.3096 22 6 4.3880 -2.2197 -2.7277 23 6 4.6074 -3.4772 -3.5852 24 6 3.5184 -2.9314 -4.5239 25 1 -0.3634 -1.0220 0.1079 26 1 -0.3634 0.6044 0.8310 27 1 -0.3634 0.4175 -0.9390 28 1 0.7081 1.1610 3.4843 29 1 0.9128 1.5567 -3.0331 30 1 1.7438 1.8037 -1.4757 31 1 3.9068 2.0127 -2.5960 32 1 2.7633 3.1143 -3.4014 33 1 4.5251 -0.0346 -3.7048 34 1 3.8217 -0.3932 -5.3012 35 1 2.2349 -2.7337 -2.7324 36 1 5.0119 -1.3759 -3.0225 37 1 4.4141 -2.4125 -1.6552 38 1 4.3268 -4.4028 -3.0825 39 1 5.5949 -3.5262 -4.0438 40 1 2.8427 -3.6989 -4.9015 41 1 3.9046 -2.2823 -5.3097 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597804602.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:40 Heat of formation + Delta-G solvation = -38.362562 kcal Electronic energy + Delta-G solvation = -22169.015527 eV Core-core repulsion = 19050.648322 eV Total energy + Delta-G solvation = -3118.367205 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.56070 -37.79158 -37.78154 -34.14835 -33.77112 -31.37732 -30.23008 -27.55458 -25.52349 -25.29577 -25.17299 -23.19231 -22.56353 -21.02463 -19.10069 -18.16247 -16.50451 -16.29193 -16.05849 -15.51410 -15.11987 -15.05987 -14.92834 -14.46103 -14.07708 -13.72260 -13.19909 -12.65007 -12.47532 -12.38577 -11.97029 -11.87225 -11.56955 -11.44294 -11.05396 -10.96777 -10.80644 -10.67485 -10.56605 -10.41273 -10.18411 -10.02103 -9.83882 -9.81722 -9.72809 -8.99370 -8.45661 -8.08530 -7.80827 -6.06432 -4.09204 3.33117 3.36252 3.39346 3.49800 3.67362 3.91849 4.43276 4.84973 4.97856 5.02419 5.03788 5.14014 5.20443 5.26624 5.27803 5.41327 5.48954 5.61843 5.75901 5.81449 5.90529 5.92770 6.02155 6.09056 6.13957 6.15430 6.30788 6.63170 6.64397 6.67207 6.81866 6.91112 6.96369 7.16324 7.21403 7.42553 7.72957 7.95020 8.07270 8.35570 8.96343 9.22916 9.55749 11.01433 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.006851 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.071243 B = 4086.009558 C = 4929.437748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.031 3.969 3 H 0.046 0.954 4 C -0.500 4.500 5 H 0.070 0.930 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.525 3.475 13 O -0.529 6.529 14 N -0.625 5.625 15 C 0.074 3.926 16 C 0.046 3.954 17 O -0.386 6.386 18 C 0.045 3.955 19 C 0.122 3.878 20 H 0.069 0.931 21 C -0.093 4.093 22 C -0.133 4.133 23 C -0.139 4.139 24 C -0.152 4.152 25 H 0.034 0.966 26 H 0.089 0.911 27 H 0.010 0.990 28 H 0.261 0.739 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.129 0.871 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.578 0.382 -12.904 13.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.010 3.990 3 H 0.063 0.937 4 C -0.538 4.538 5 H 0.088 0.912 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.317 3.683 13 O -0.406 6.406 14 N -0.362 5.362 15 C -0.049 4.049 16 C -0.031 4.031 17 O -0.305 6.305 18 C -0.032 4.032 19 C 0.018 3.982 20 H 0.087 0.913 21 C -0.111 4.111 22 C -0.170 4.170 23 C -0.176 4.176 24 C -0.190 4.190 25 H 0.054 0.946 26 H 0.108 0.892 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.146 0.854 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.648 -0.053 -12.869 13.376 hybrid contribution 0.246 -0.380 1.026 1.121 sum 3.893 -0.433 -11.843 12.474 Atomic orbital electron populations 1.21672 0.96198 1.00969 0.99654 1.18907 0.94192 0.96496 0.89392 0.93660 1.21033 1.31236 1.12508 0.89038 0.91230 1.24930 0.95082 0.95033 0.99050 1.69870 1.36942 1.23027 1.23675 0.86533 0.79185 0.79811 0.81759 1.20266 1.21344 1.20189 1.21931 0.75172 0.87382 0.83772 1.90462 1.48494 1.17511 1.84098 1.48429 1.71201 1.08683 1.07855 1.22499 0.97703 0.81469 1.03247 1.23085 0.97715 0.96497 0.85804 1.87890 1.89268 1.23742 1.29554 1.23274 0.96846 0.81819 1.01250 1.21704 0.96858 0.92875 0.86776 0.91284 1.23066 0.98828 0.93801 0.95388 1.23087 0.96079 0.96665 1.01132 1.22723 0.98032 0.98570 0.98299 1.23207 0.98757 0.99991 0.97092 0.94641 0.89192 0.97051 0.92881 0.91437 0.87466 0.92618 0.88066 0.92001 0.88497 0.85390 0.91179 0.90145 0.90488 0.92358 0.91986 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.86 37.16 0.33 -2.62 16 2 C 0.03 0.75 1.89 -92.92 -0.18 0.58 16 3 H 0.05 1.11 6.14 -51.93 -0.32 0.79 16 4 C -0.50 -13.79 8.34 -34.44 -0.29 -14.08 16 5 H 0.07 2.01 6.98 -52.49 -0.37 1.65 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -24.72 11.39 55.43 0.63 -24.09 16 8 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 C 0.53 11.55 6.66 -10.98 -0.07 11.48 16 13 O -0.53 -12.55 9.87 5.55 0.05 -12.49 16 14 N -0.62 -11.23 3.01 -164.49 -0.50 -11.72 16 15 C 0.07 1.14 6.36 -3.32 -0.02 1.12 16 16 C 0.05 0.62 7.00 37.53 0.26 0.88 16 17 O -0.39 -5.58 10.74 -35.23 -0.38 -5.96 16 18 C 0.05 0.62 5.50 37.31 0.21 0.83 16 19 C 0.12 1.91 3.21 -67.42 -0.22 1.69 16 20 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 21 C -0.09 -1.49 2.49 -89.81 -0.22 -1.71 16 22 C -0.13 -2.14 6.57 -25.92 -0.17 -2.31 16 23 C -0.14 -1.86 8.08 -25.92 -0.21 -2.07 16 24 C -0.15 -1.95 7.45 -25.92 -0.19 -2.14 16 25 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.09 2.26 6.25 -51.93 -0.32 1.93 16 27 H 0.01 0.22 7.96 -51.93 -0.41 -0.20 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.11 1.74 5.51 -51.93 -0.29 1.46 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.89 5.60 -51.93 -0.29 0.60 16 34 H 0.10 1.13 6.66 -51.93 -0.35 0.79 16 35 H 0.13 2.48 5.95 -52.04 -0.31 2.17 16 36 H 0.07 1.06 5.45 -51.93 -0.28 0.78 16 37 H 0.08 1.57 6.89 -51.93 -0.36 1.21 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.82 6.30 -51.93 -0.33 0.49 16 LS Contribution 306.71 15.07 4.62 4.62 Total: -1.00 -29.08 306.71 -7.59 -36.68 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.14 Total: 3.26 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -0.87 Total: -6.81 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.14 Total: -35.81 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.32 Total: -18.45 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.08 -7.59 -36.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597804602.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.686 kcal (2) G-P(sol) polarization free energy of solvation -29.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds