Wall clock time and date at job start Mon Mar 30 2020 05:19:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09001 * 109.47286 * 2 1
4 4 C 1.50705 * 109.46847 * 119.99807 * 2 1 3
5 5 H 1.07997 * 119.99900 * 119.99912 * 4 2 1
6 6 C 1.37872 * 120.00013 * 299.99755 * 4 2 1
7 7 N 1.31523 * 120.00091 * 0.02562 * 6 4 2
8 8 Si 1.86794 * 120.00040 * 180.02562 * 6 4 2
9 9 H 1.48505 * 109.47290 * 60.00329 * 8 6 4
10 10 H 1.48506 * 109.47305 * 180.02562 * 8 6 4
11 11 H 1.48502 * 109.47408 * 300.00519 * 8 6 4
12 12 C 1.50699 * 109.46950 * 239.99635 * 2 1 3
13 13 O 1.21284 * 119.99911 * 262.78657 * 12 2 1
14 14 N 1.34781 * 119.99939 * 82.79802 * 12 2 1
15 15 C 1.47146 * 120.98266 * 5.21231 * 14 12 2
16 16 C 1.53718 * 108.16027 * 129.43591 * 15 14 12
17 17 O 1.42960 * 109.14478 * 52.54298 * 16 15 14
18 18 C 1.42962 * 114.16426 * 297.28691 * 17 16 15
19 19 C 1.47152 * 120.98101 * 185.50255 * 14 12 2
20 20 H 1.09006 * 109.67655 * 110.78460 * 19 14 12
21 21 C 1.53000 * 109.68329 * 350.27162 * 19 14 12
22 22 C 1.53782 * 113.61076 * 283.62360 * 21 19 14
23 23 C 1.53782 * 87.07958 * 220.02037 * 22 21 19
24 24 C 1.53778 * 113.61405 * 186.12608 * 21 19 14
25 25 H 1.09002 * 109.47355 * 186.02592 * 1 2 3
26 26 H 1.08994 * 109.47546 * 306.02659 * 1 2 3
27 27 H 1.08997 * 109.47291 * 66.02875 * 1 2 3
28 28 H 0.96996 * 119.99891 * 179.97438 * 7 6 4
29 29 H 1.08992 * 109.68867 * 249.21886 * 15 14 12
30 30 H 1.09003 * 109.68453 * 9.77431 * 15 14 12
31 31 H 1.08995 * 109.65884 * 292.57252 * 16 15 14
32 32 H 1.08995 * 109.48226 * 172.40075 * 16 15 14
33 33 H 1.08997 * 109.51655 * 302.65844 * 18 17 16
34 34 H 1.09004 * 109.51225 * 182.50162 * 18 17 16
35 35 H 1.09000 * 112.84941 * 54.92567 * 21 19 14
36 36 H 1.09001 * 113.61560 * 334.56628 * 22 21 19
37 37 H 1.08997 * 113.61391 * 105.47251 * 22 21 19
38 38 H 1.09005 * 113.60918 * 270.88161 * 23 22 21
39 39 H 1.08997 * 113.61576 * 139.98711 * 23 22 21
40 40 H 1.09000 * 113.61793 * 254.52533 * 24 21 19
41 41 H 1.08999 * 113.61398 * 25.43371 * 24 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 1.2305
5 1 2.6531 -1.5885 1.1315
6 6 1.6992 -0.2393 2.4827
7 7 0.9427 0.8298 2.6034
8 14 2.3223 -1.1194 4.0080
9 1 3.8074 -1.1188 4.0078
10 1 1.8267 -0.4197 5.2205
11 1 1.8280 -2.5197 4.0083
12 6 2.0323 -0.7105 -1.2304
13 8 2.3587 -1.8768 -1.1664
14 7 2.1189 -0.0497 -2.4019
15 6 1.8379 1.3925 -2.4808
16 6 3.0088 2.0695 -3.2112
17 8 3.2374 1.3990 -4.4529
18 6 3.6249 0.0298 -4.3160
19 6 2.4911 -0.7506 -3.6411
20 1 1.6305 -0.7985 -4.3084
21 6 2.9654 -2.1669 -3.3096
22 6 4.3880 -2.2197 -2.7277
23 6 4.6074 -3.4772 -3.5852
24 6 3.5184 -2.9314 -4.5239
25 1 -0.3634 -1.0220 0.1079
26 1 -0.3634 0.6044 0.8310
27 1 -0.3634 0.4175 -0.9390
28 1 0.7081 1.1610 3.4843
29 1 0.9128 1.5567 -3.0331
30 1 1.7438 1.8037 -1.4757
31 1 3.9068 2.0127 -2.5960
32 1 2.7633 3.1143 -3.4014
33 1 4.5251 -0.0346 -3.7048
34 1 3.8217 -0.3932 -5.3012
35 1 2.2349 -2.7337 -2.7324
36 1 5.0119 -1.3759 -3.0225
37 1 4.4141 -2.4125 -1.6552
38 1 4.3268 -4.4028 -3.0825
39 1 5.5949 -3.5262 -4.0438
40 1 2.8427 -3.6989 -4.9015
41 1 3.9046 -2.2823 -5.3097
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597804602.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:19:40
Heat of formation + Delta-G solvation = -38.362562 kcal
Electronic energy + Delta-G solvation = -22169.015527 eV
Core-core repulsion = 19050.648322 eV
Total energy + Delta-G solvation = -3118.367205 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 267.162 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.56070 -37.79158 -37.78154 -34.14835 -33.77112 -31.37732 -30.23008 -27.55458
-25.52349 -25.29577 -25.17299 -23.19231 -22.56353 -21.02463 -19.10069 -18.16247
-16.50451 -16.29193 -16.05849 -15.51410 -15.11987 -15.05987 -14.92834 -14.46103
-14.07708 -13.72260 -13.19909 -12.65007 -12.47532 -12.38577 -11.97029 -11.87225
-11.56955 -11.44294 -11.05396 -10.96777 -10.80644 -10.67485 -10.56605 -10.41273
-10.18411 -10.02103 -9.83882 -9.81722 -9.72809 -8.99370 -8.45661 -8.08530
-7.80827 -6.06432 -4.09204 3.33117 3.36252 3.39346 3.49800 3.67362
3.91849 4.43276 4.84973 4.97856 5.02419 5.03788 5.14014 5.20443
5.26624 5.27803 5.41327 5.48954 5.61843 5.75901 5.81449 5.90529
5.92770 6.02155 6.09056 6.13957 6.15430 6.30788 6.63170 6.64397
6.67207 6.81866 6.91112 6.96369 7.16324 7.21403 7.42553 7.72957
7.95020 8.07270 8.35570 8.96343 9.22916 9.55749 11.01433
Molecular weight = 267.16amu
Principal moments of inertia in cm(-1)
A = 0.020689 B = 0.006851 C = 0.005679
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1353.071243 B = 4086.009558 C = 4929.437748
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C 0.031 3.969
3 H 0.046 0.954
4 C -0.500 4.500
5 H 0.070 0.930
6 C 0.060 3.940
7 N -0.896 5.896
8 Si 0.899 3.101
9 H -0.277 1.277
10 H -0.288 1.288
11 H -0.276 1.276
12 C 0.525 3.475
13 O -0.529 6.529
14 N -0.625 5.625
15 C 0.074 3.926
16 C 0.046 3.954
17 O -0.386 6.386
18 C 0.045 3.955
19 C 0.122 3.878
20 H 0.069 0.931
21 C -0.093 4.093
22 C -0.133 4.133
23 C -0.139 4.139
24 C -0.152 4.152
25 H 0.034 0.966
26 H 0.089 0.911
27 H 0.010 0.990
28 H 0.261 0.739
29 H 0.067 0.933
30 H 0.107 0.893
31 H 0.055 0.945
32 H 0.101 0.899
33 H 0.062 0.938
34 H 0.097 0.903
35 H 0.129 0.871
36 H 0.070 0.930
37 H 0.080 0.920
38 H 0.076 0.924
39 H 0.058 0.942
40 H 0.061 0.939
41 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.578 0.382 -12.904 13.396
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.010 3.990
3 H 0.063 0.937
4 C -0.538 4.538
5 H 0.088 0.912
6 C -0.141 4.141
7 N -0.535 5.535
8 Si 0.727 3.273
9 H -0.203 1.203
10 H -0.213 1.213
11 H -0.202 1.202
12 C 0.317 3.683
13 O -0.406 6.406
14 N -0.362 5.362
15 C -0.049 4.049
16 C -0.031 4.031
17 O -0.305 6.305
18 C -0.032 4.032
19 C 0.018 3.982
20 H 0.087 0.913
21 C -0.111 4.111
22 C -0.170 4.170
23 C -0.176 4.176
24 C -0.190 4.190
25 H 0.054 0.946
26 H 0.108 0.892
27 H 0.029 0.971
28 H 0.071 0.929
29 H 0.086 0.914
30 H 0.125 0.875
31 H 0.074 0.926
32 H 0.119 0.881
33 H 0.080 0.920
34 H 0.115 0.885
35 H 0.146 0.854
36 H 0.088 0.912
37 H 0.099 0.901
38 H 0.095 0.905
39 H 0.076 0.924
40 H 0.080 0.920
41 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 3.648 -0.053 -12.869 13.376
hybrid contribution 0.246 -0.380 1.026 1.121
sum 3.893 -0.433 -11.843 12.474
Atomic orbital electron populations
1.21672 0.96198 1.00969 0.99654 1.18907 0.94192 0.96496 0.89392
0.93660 1.21033 1.31236 1.12508 0.89038 0.91230 1.24930 0.95082
0.95033 0.99050 1.69870 1.36942 1.23027 1.23675 0.86533 0.79185
0.79811 0.81759 1.20266 1.21344 1.20189 1.21931 0.75172 0.87382
0.83772 1.90462 1.48494 1.17511 1.84098 1.48429 1.71201 1.08683
1.07855 1.22499 0.97703 0.81469 1.03247 1.23085 0.97715 0.96497
0.85804 1.87890 1.89268 1.23742 1.29554 1.23274 0.96846 0.81819
1.01250 1.21704 0.96858 0.92875 0.86776 0.91284 1.23066 0.98828
0.93801 0.95388 1.23087 0.96079 0.96665 1.01132 1.22723 0.98032
0.98570 0.98299 1.23207 0.98757 0.99991 0.97092 0.94641 0.89192
0.97051 0.92881 0.91437 0.87466 0.92618 0.88066 0.92001 0.88497
0.85390 0.91179 0.90145 0.90488 0.92358 0.91986 0.90856
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.95 8.86 37.16 0.33 -2.62 16
2 C 0.03 0.75 1.89 -92.92 -0.18 0.58 16
3 H 0.05 1.11 6.14 -51.93 -0.32 0.79 16
4 C -0.50 -13.79 8.34 -34.44 -0.29 -14.08 16
5 H 0.07 2.01 6.98 -52.49 -0.37 1.65 16
6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16
7 N -0.90 -24.72 11.39 55.43 0.63 -24.09 16
8 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16
9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16
12 C 0.53 11.55 6.66 -10.98 -0.07 11.48 16
13 O -0.53 -12.55 9.87 5.55 0.05 -12.49 16
14 N -0.62 -11.23 3.01 -164.49 -0.50 -11.72 16
15 C 0.07 1.14 6.36 -3.32 -0.02 1.12 16
16 C 0.05 0.62 7.00 37.53 0.26 0.88 16
17 O -0.39 -5.58 10.74 -35.23 -0.38 -5.96 16
18 C 0.05 0.62 5.50 37.31 0.21 0.83 16
19 C 0.12 1.91 3.21 -67.42 -0.22 1.69 16
20 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16
21 C -0.09 -1.49 2.49 -89.81 -0.22 -1.71 16
22 C -0.13 -2.14 6.57 -25.92 -0.17 -2.31 16
23 C -0.14 -1.86 8.08 -25.92 -0.21 -2.07 16
24 C -0.15 -1.95 7.45 -25.92 -0.19 -2.14 16
25 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16
26 H 0.09 2.26 6.25 -51.93 -0.32 1.93 16
27 H 0.01 0.22 7.96 -51.93 -0.41 -0.20 16
28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16
29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16
30 H 0.11 1.74 5.51 -51.93 -0.29 1.46 16
31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
32 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16
33 H 0.06 0.89 5.60 -51.93 -0.29 0.60 16
34 H 0.10 1.13 6.66 -51.93 -0.35 0.79 16
35 H 0.13 2.48 5.95 -52.04 -0.31 2.17 16
36 H 0.07 1.06 5.45 -51.93 -0.28 0.78 16
37 H 0.08 1.57 6.89 -51.93 -0.36 1.21 16
38 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16
39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16
40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16
41 H 0.07 0.82 6.30 -51.93 -0.33 0.49 16
LS Contribution 306.71 15.07 4.62 4.62
Total: -1.00 -29.08 306.71 -7.59 -36.68
By element:
Atomic # 1 Polarization: 9.40 SS G_CDS: -6.14 Total: 3.26 kcal
Atomic # 6 Polarization: -5.94 SS G_CDS: -0.87 Total: -6.81 kcal
Atomic # 7 Polarization: -35.95 SS G_CDS: 0.14 Total: -35.81 kcal
Atomic # 8 Polarization: -18.13 SS G_CDS: -0.32 Total: -18.45 kcal
Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal
Total LS contribution 4.62 Total: 4.62 kcal
Total: -29.08 -7.59 -36.68 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597804602.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.686 kcal
(2) G-P(sol) polarization free energy of solvation -29.083 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.768 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.677 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.363 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds