Wall clock time and date at job start Mon Mar 30 2020 05:19:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09001 * 109.47286 * 2 1
4 4 C 1.50705 * 109.46847 * 119.99807 * 2 1 3
5 5 H 1.07997 * 119.99900 * 119.99912 * 4 2 1
6 6 C 1.37872 * 120.00013 * 299.99755 * 4 2 1
7 7 N 1.31523 * 120.00091 * 0.02562 * 6 4 2
8 8 Si 1.86794 * 120.00040 * 180.02562 * 6 4 2
9 9 H 1.48505 * 109.47290 * 60.00329 * 8 6 4
10 10 H 1.48506 * 109.47305 * 180.02562 * 8 6 4
11 11 H 1.48502 * 109.47408 * 300.00519 * 8 6 4
12 12 C 1.50699 * 109.46950 * 239.99635 * 2 1 3
13 13 O 1.21284 * 119.99911 * 262.78657 * 12 2 1
14 14 N 1.34781 * 119.99939 * 82.79802 * 12 2 1
15 15 C 1.47146 * 120.98266 * 5.21231 * 14 12 2
16 16 C 1.53718 * 108.16027 * 129.43591 * 15 14 12
17 17 O 1.42960 * 109.14478 * 52.54298 * 16 15 14
18 18 C 1.42962 * 114.16426 * 297.28691 * 17 16 15
19 19 C 1.47152 * 120.98101 * 185.50255 * 14 12 2
20 20 H 1.09006 * 109.67655 * 110.78460 * 19 14 12
21 21 C 1.53000 * 109.68329 * 350.27162 * 19 14 12
22 22 C 1.53782 * 113.61076 * 283.62360 * 21 19 14
23 23 C 1.53782 * 87.07958 * 220.02037 * 22 21 19
24 24 C 1.53778 * 113.61405 * 186.12608 * 21 19 14
25 25 H 1.09002 * 109.47355 * 186.02592 * 1 2 3
26 26 H 1.08994 * 109.47546 * 306.02659 * 1 2 3
27 27 H 1.08997 * 109.47291 * 66.02875 * 1 2 3
28 28 H 0.96996 * 119.99891 * 179.97438 * 7 6 4
29 29 H 1.08992 * 109.68867 * 249.21886 * 15 14 12
30 30 H 1.09003 * 109.68453 * 9.77431 * 15 14 12
31 31 H 1.08995 * 109.65884 * 292.57252 * 16 15 14
32 32 H 1.08995 * 109.48226 * 172.40075 * 16 15 14
33 33 H 1.08997 * 109.51655 * 302.65844 * 18 17 16
34 34 H 1.09004 * 109.51225 * 182.50162 * 18 17 16
35 35 H 1.09000 * 112.84941 * 54.92567 * 21 19 14
36 36 H 1.09001 * 113.61560 * 334.56628 * 22 21 19
37 37 H 1.08997 * 113.61391 * 105.47251 * 22 21 19
38 38 H 1.09005 * 113.60918 * 270.88161 * 23 22 21
39 39 H 1.08997 * 113.61576 * 139.98711 * 23 22 21
40 40 H 1.09000 * 113.61793 * 254.52533 * 24 21 19
41 41 H 1.08999 * 113.61398 * 25.43371 * 24 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 1.2305
5 1 2.6531 -1.5885 1.1315
6 6 1.6992 -0.2393 2.4827
7 7 0.9427 0.8298 2.6034
8 14 2.3223 -1.1194 4.0080
9 1 3.8074 -1.1188 4.0078
10 1 1.8267 -0.4197 5.2205
11 1 1.8280 -2.5197 4.0083
12 6 2.0323 -0.7105 -1.2304
13 8 2.3587 -1.8768 -1.1664
14 7 2.1189 -0.0497 -2.4019
15 6 1.8379 1.3925 -2.4808
16 6 3.0088 2.0695 -3.2112
17 8 3.2374 1.3990 -4.4529
18 6 3.6249 0.0298 -4.3160
19 6 2.4911 -0.7506 -3.6411
20 1 1.6305 -0.7985 -4.3084
21 6 2.9654 -2.1669 -3.3096
22 6 4.3880 -2.2197 -2.7277
23 6 4.6074 -3.4772 -3.5852
24 6 3.5184 -2.9314 -4.5239
25 1 -0.3634 -1.0220 0.1079
26 1 -0.3634 0.6044 0.8310
27 1 -0.3634 0.4175 -0.9390
28 1 0.7081 1.1610 3.4843
29 1 0.9128 1.5567 -3.0331
30 1 1.7438 1.8037 -1.4757
31 1 3.9068 2.0127 -2.5960
32 1 2.7633 3.1143 -3.4014
33 1 4.5251 -0.0346 -3.7048
34 1 3.8217 -0.3932 -5.3012
35 1 2.2349 -2.7337 -2.7324
36 1 5.0119 -1.3759 -3.0225
37 1 4.4141 -2.4125 -1.6552
38 1 4.3268 -4.4028 -3.0825
39 1 5.5949 -3.5262 -4.0438
40 1 2.8427 -3.6989 -4.9015
41 1 3.9046 -2.2823 -5.3097
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597804602.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:19:39
Heat of formation + Delta-G solvation = -55.947953 kcal
Electronic energy + Delta-G solvation = -22169.778087 eV
Core-core repulsion = 19050.648322 eV
Total energy + Delta-G solvation = -3119.129765 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 267.162 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-41.92329 -39.29794 -38.95191 -35.81701 -35.51256 -32.86693 -31.90616 -28.88671
-27.27105 -26.68481 -26.45150 -24.81976 -23.78789 -22.50983 -20.43853 -19.60962
-18.35292 -17.73934 -17.44508 -17.00479 -16.49995 -16.37843 -16.28824 -16.00145
-15.46381 -15.05245 -14.89194 -14.22906 -14.11917 -13.66457 -13.36703 -13.24750
-13.10645 -12.90760 -12.75125 -12.65318 -12.49794 -12.24382 -12.14064 -11.99948
-11.82523 -11.43012 -11.19274 -11.05772 -10.96461 -10.92428 -10.53749 -9.69552
-9.26034 -8.16768 -6.26025 1.38683 1.40059 1.48191 1.95887 2.07852
2.43133 2.84809 3.13290 3.66947 3.75071 3.85808 3.90161 3.96994
4.07236 4.13487 4.21594 4.32991 4.39260 4.46785 4.62756 4.72375
4.76538 4.82636 4.88357 4.91008 4.94721 4.98036 5.04155 5.08350
5.10134 5.33186 5.42940 5.45545 5.64198 5.71438 5.81370 5.92529
6.10228 6.18095 6.60212 6.80537 7.39575 7.57569 8.89334
Molecular weight = 267.16amu
Principal moments of inertia in cm(-1)
A = 0.020689 B = 0.006851 C = 0.005679
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1353.071243 B = 4086.009558 C = 4929.437748
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C 0.028 3.972
3 H 0.041 0.959
4 C -0.524 4.524
5 H 0.045 0.955
6 C 0.022 3.978
7 N -0.910 5.910
8 Si 0.952 3.048
9 H -0.275 1.275
10 H -0.274 1.274
11 H -0.280 1.280
12 C 0.522 3.478
13 O -0.556 6.556
14 N -0.621 5.621
15 C 0.068 3.932
16 C 0.051 3.949
17 O -0.387 6.387
18 C 0.051 3.949
19 C 0.118 3.882
20 H 0.080 0.920
21 C -0.100 4.100
22 C -0.138 4.138
23 C -0.132 4.132
24 C -0.131 4.131
25 H 0.017 0.983
26 H 0.071 0.929
27 H 0.040 0.960
28 H 0.265 0.735
29 H 0.085 0.915
30 H 0.094 0.906
31 H 0.048 0.952
32 H 0.134 0.866
33 H 0.055 0.945
34 H 0.128 0.872
35 H 0.089 0.911
36 H 0.082 0.918
37 H 0.034 0.966
38 H 0.066 0.934
39 H 0.083 0.917
40 H 0.072 0.928
41 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.172 1.040 -15.043 15.646
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.007 3.993
3 H 0.059 0.941
4 C -0.562 4.562
5 H 0.063 0.937
6 C -0.178 4.178
7 N -0.549 5.549
8 Si 0.778 3.222
9 H -0.200 1.200
10 H -0.199 1.199
11 H -0.205 1.205
12 C 0.313 3.687
13 O -0.434 6.434
14 N -0.357 5.357
15 C -0.054 4.054
16 C -0.026 4.026
17 O -0.306 6.306
18 C -0.026 4.026
19 C 0.015 3.985
20 H 0.098 0.902
21 C -0.119 4.119
22 C -0.175 4.175
23 C -0.169 4.169
24 C -0.169 4.169
25 H 0.036 0.964
26 H 0.090 0.910
27 H 0.059 0.941
28 H 0.074 0.926
29 H 0.104 0.896
30 H 0.112 0.888
31 H 0.067 0.933
32 H 0.152 0.848
33 H 0.073 0.927
34 H 0.146 0.854
35 H 0.107 0.893
36 H 0.100 0.900
37 H 0.053 0.947
38 H 0.085 0.915
39 H 0.101 0.899
40 H 0.090 0.910
41 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges 4.238 0.637 -15.038 15.637
hybrid contribution 0.042 -0.562 1.685 1.777
sum 4.281 0.075 -13.352 14.022
Atomic orbital electron populations
1.21465 0.95644 0.99551 1.00372 1.18821 0.94651 0.96035 0.89833
0.94130 1.21184 1.31657 1.12312 0.91080 0.93688 1.25549 0.95226
0.95711 1.01274 1.69943 1.37122 1.23531 1.24346 0.85712 0.78727
0.78653 0.79141 1.20029 1.19932 1.20541 1.21457 0.75650 0.87015
0.84588 1.90493 1.49632 1.18443 1.84863 1.48349 1.69991 1.09825
1.07508 1.22707 0.99679 0.79858 1.03203 1.23153 0.96374 0.97811
0.85255 1.87901 1.89106 1.23827 1.29747 1.23306 0.95323 0.81484
1.02439 1.21935 0.98170 0.92739 0.85641 0.90247 1.22863 0.97703
0.94180 0.97111 1.23072 0.96878 0.98789 0.98746 1.22690 0.99763
0.96758 0.97720 1.23119 0.97899 0.99748 0.96104 0.96410 0.91048
0.94112 0.92594 0.89642 0.88821 0.93339 0.84796 0.92652 0.85404
0.89350 0.89972 0.94735 0.91484 0.89888 0.90952 0.88081
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -5.32 8.86 71.98 0.64 -4.68 16
2 C 0.03 1.38 1.89 -12.29 -0.02 1.36 16
3 H 0.04 2.05 6.14 -2.39 -0.01 2.04 16
4 C -0.52 -30.03 8.34 25.60 0.21 -29.82 16
5 H 0.04 2.75 6.98 -2.91 -0.02 2.73 16
6 C 0.02 1.21 5.30 84.65 0.45 1.66 16
7 N -0.91 -50.80 11.39 21.45 0.24 -50.55 16
8 Si 0.95 44.84 29.54 68.60 2.03 46.86 16
9 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16
10 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16
11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16
12 C 0.52 23.64 6.66 87.66 0.58 24.23 16
13 O -0.56 -27.75 9.87 -3.04 -0.03 -27.78 16
14 N -0.62 -22.06 3.01 -792.73 -2.39 -24.45 16
15 C 0.07 1.99 6.36 86.50 0.55 2.54 16
16 C 0.05 1.24 7.00 72.22 0.51 1.75 16
17 O -0.39 -9.85 10.74 -148.98 -1.60 -11.45 16
18 C 0.05 1.26 5.50 72.08 0.40 1.65 16
19 C 0.12 3.51 3.21 44.96 0.14 3.65 16
20 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16
21 C -0.10 -3.17 2.49 -10.27 -0.03 -3.20 16
22 C -0.14 -4.46 6.57 31.12 0.20 -4.25 16
23 C -0.13 -3.34 8.08 31.12 0.25 -3.09 16
24 C -0.13 -2.98 7.45 31.12 0.23 -2.75 16
25 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16
26 H 0.07 3.64 6.25 -2.39 -0.01 3.63 16
27 H 0.04 1.63 7.96 -2.39 -0.02 1.61 16
28 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16
29 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16
30 H 0.09 3.01 5.51 -2.39 -0.01 2.99 16
31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16
32 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16
33 H 0.06 1.45 5.60 -2.39 -0.01 1.44 16
34 H 0.13 2.36 6.66 -2.38 -0.02 2.34 16
35 H 0.09 3.55 5.95 -4.11 -0.02 3.53 16
36 H 0.08 2.41 5.45 -2.39 -0.01 2.40 16
37 H 0.03 1.42 6.89 -2.39 -0.02 1.40 16
38 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16
39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16
40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16
41 H 0.10 1.77 6.30 -2.39 -0.02 1.76 16
Total: -1.00 -64.91 306.71 3.38 -61.53
By element:
Atomic # 1 Polarization: 15.78 SS G_CDS: 1.01 Total: 16.80 kcal
Atomic # 6 Polarization: -15.08 SS G_CDS: 4.12 Total: -10.96 kcal
Atomic # 7 Polarization: -72.86 SS G_CDS: -2.14 Total: -75.00 kcal
Atomic # 8 Polarization: -37.60 SS G_CDS: -1.63 Total: -39.23 kcal
Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal
Total: -64.91 3.38 -61.53 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597804602.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.581 kcal
(2) G-P(sol) polarization free energy of solvation -64.914 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.333 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.529 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.948 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds