Wall clock time and date at job start Mon Mar 30 2020 05:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47286 * 2 1 4 4 C 1.50705 * 109.46847 * 119.99807 * 2 1 3 5 5 H 1.07997 * 119.99900 * 119.99912 * 4 2 1 6 6 C 1.37872 * 120.00013 * 299.99755 * 4 2 1 7 7 N 1.31523 * 120.00091 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00040 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47290 * 60.00329 * 8 6 4 10 10 H 1.48506 * 109.47305 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47408 * 300.00519 * 8 6 4 12 12 C 1.50699 * 109.46950 * 239.99635 * 2 1 3 13 13 O 1.21284 * 119.99911 * 262.78657 * 12 2 1 14 14 N 1.34781 * 119.99939 * 82.79802 * 12 2 1 15 15 C 1.47146 * 120.98266 * 5.21231 * 14 12 2 16 16 C 1.53718 * 108.16027 * 129.43591 * 15 14 12 17 17 O 1.42960 * 109.14478 * 52.54298 * 16 15 14 18 18 C 1.42962 * 114.16426 * 297.28691 * 17 16 15 19 19 C 1.47152 * 120.98101 * 185.50255 * 14 12 2 20 20 H 1.09006 * 109.67655 * 110.78460 * 19 14 12 21 21 C 1.53000 * 109.68329 * 350.27162 * 19 14 12 22 22 C 1.53782 * 113.61076 * 283.62360 * 21 19 14 23 23 C 1.53782 * 87.07958 * 220.02037 * 22 21 19 24 24 C 1.53778 * 113.61405 * 186.12608 * 21 19 14 25 25 H 1.09002 * 109.47355 * 186.02592 * 1 2 3 26 26 H 1.08994 * 109.47546 * 306.02659 * 1 2 3 27 27 H 1.08997 * 109.47291 * 66.02875 * 1 2 3 28 28 H 0.96996 * 119.99891 * 179.97438 * 7 6 4 29 29 H 1.08992 * 109.68867 * 249.21886 * 15 14 12 30 30 H 1.09003 * 109.68453 * 9.77431 * 15 14 12 31 31 H 1.08995 * 109.65884 * 292.57252 * 16 15 14 32 32 H 1.08995 * 109.48226 * 172.40075 * 16 15 14 33 33 H 1.08997 * 109.51655 * 302.65844 * 18 17 16 34 34 H 1.09004 * 109.51225 * 182.50162 * 18 17 16 35 35 H 1.09000 * 112.84941 * 54.92567 * 21 19 14 36 36 H 1.09001 * 113.61560 * 334.56628 * 22 21 19 37 37 H 1.08997 * 113.61391 * 105.47251 * 22 21 19 38 38 H 1.09005 * 113.60918 * 270.88161 * 23 22 21 39 39 H 1.08997 * 113.61576 * 139.98711 * 23 22 21 40 40 H 1.09000 * 113.61793 * 254.52533 * 24 21 19 41 41 H 1.08999 * 113.61398 * 25.43371 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8298 2.6034 8 14 2.3223 -1.1194 4.0080 9 1 3.8074 -1.1188 4.0078 10 1 1.8267 -0.4197 5.2205 11 1 1.8280 -2.5197 4.0083 12 6 2.0323 -0.7105 -1.2304 13 8 2.3587 -1.8768 -1.1664 14 7 2.1189 -0.0497 -2.4019 15 6 1.8379 1.3925 -2.4808 16 6 3.0088 2.0695 -3.2112 17 8 3.2374 1.3990 -4.4529 18 6 3.6249 0.0298 -4.3160 19 6 2.4911 -0.7506 -3.6411 20 1 1.6305 -0.7985 -4.3084 21 6 2.9654 -2.1669 -3.3096 22 6 4.3880 -2.2197 -2.7277 23 6 4.6074 -3.4772 -3.5852 24 6 3.5184 -2.9314 -4.5239 25 1 -0.3634 -1.0220 0.1079 26 1 -0.3634 0.6044 0.8310 27 1 -0.3634 0.4175 -0.9390 28 1 0.7081 1.1610 3.4843 29 1 0.9128 1.5567 -3.0331 30 1 1.7438 1.8037 -1.4757 31 1 3.9068 2.0127 -2.5960 32 1 2.7633 3.1143 -3.4014 33 1 4.5251 -0.0346 -3.7048 34 1 3.8217 -0.3932 -5.3012 35 1 2.2349 -2.7337 -2.7324 36 1 5.0119 -1.3759 -3.0225 37 1 4.4141 -2.4125 -1.6552 38 1 4.3268 -4.4028 -3.0825 39 1 5.5949 -3.5262 -4.0438 40 1 2.8427 -3.6989 -4.9015 41 1 3.9046 -2.2823 -5.3097 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597804602.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:39 Heat of formation + Delta-G solvation = -55.947953 kcal Electronic energy + Delta-G solvation = -22169.778087 eV Core-core repulsion = 19050.648322 eV Total energy + Delta-G solvation = -3119.129765 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.92329 -39.29794 -38.95191 -35.81701 -35.51256 -32.86693 -31.90616 -28.88671 -27.27105 -26.68481 -26.45150 -24.81976 -23.78789 -22.50983 -20.43853 -19.60962 -18.35292 -17.73934 -17.44508 -17.00479 -16.49995 -16.37843 -16.28824 -16.00145 -15.46381 -15.05245 -14.89194 -14.22906 -14.11917 -13.66457 -13.36703 -13.24750 -13.10645 -12.90760 -12.75125 -12.65318 -12.49794 -12.24382 -12.14064 -11.99948 -11.82523 -11.43012 -11.19274 -11.05772 -10.96461 -10.92428 -10.53749 -9.69552 -9.26034 -8.16768 -6.26025 1.38683 1.40059 1.48191 1.95887 2.07852 2.43133 2.84809 3.13290 3.66947 3.75071 3.85808 3.90161 3.96994 4.07236 4.13487 4.21594 4.32991 4.39260 4.46785 4.62756 4.72375 4.76538 4.82636 4.88357 4.91008 4.94721 4.98036 5.04155 5.08350 5.10134 5.33186 5.42940 5.45545 5.64198 5.71438 5.81370 5.92529 6.10228 6.18095 6.60212 6.80537 7.39575 7.57569 8.89334 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.006851 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.071243 B = 4086.009558 C = 4929.437748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.028 3.972 3 H 0.041 0.959 4 C -0.524 4.524 5 H 0.045 0.955 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.952 3.048 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.280 1.280 12 C 0.522 3.478 13 O -0.556 6.556 14 N -0.621 5.621 15 C 0.068 3.932 16 C 0.051 3.949 17 O -0.387 6.387 18 C 0.051 3.949 19 C 0.118 3.882 20 H 0.080 0.920 21 C -0.100 4.100 22 C -0.138 4.138 23 C -0.132 4.132 24 C -0.131 4.131 25 H 0.017 0.983 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.265 0.735 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.134 0.866 33 H 0.055 0.945 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.034 0.966 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.172 1.040 -15.043 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.007 3.993 3 H 0.059 0.941 4 C -0.562 4.562 5 H 0.063 0.937 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.778 3.222 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.205 1.205 12 C 0.313 3.687 13 O -0.434 6.434 14 N -0.357 5.357 15 C -0.054 4.054 16 C -0.026 4.026 17 O -0.306 6.306 18 C -0.026 4.026 19 C 0.015 3.985 20 H 0.098 0.902 21 C -0.119 4.119 22 C -0.175 4.175 23 C -0.169 4.169 24 C -0.169 4.169 25 H 0.036 0.964 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.067 0.933 32 H 0.152 0.848 33 H 0.073 0.927 34 H 0.146 0.854 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.238 0.637 -15.038 15.637 hybrid contribution 0.042 -0.562 1.685 1.777 sum 4.281 0.075 -13.352 14.022 Atomic orbital electron populations 1.21465 0.95644 0.99551 1.00372 1.18821 0.94651 0.96035 0.89833 0.94130 1.21184 1.31657 1.12312 0.91080 0.93688 1.25549 0.95226 0.95711 1.01274 1.69943 1.37122 1.23531 1.24346 0.85712 0.78727 0.78653 0.79141 1.20029 1.19932 1.20541 1.21457 0.75650 0.87015 0.84588 1.90493 1.49632 1.18443 1.84863 1.48349 1.69991 1.09825 1.07508 1.22707 0.99679 0.79858 1.03203 1.23153 0.96374 0.97811 0.85255 1.87901 1.89106 1.23827 1.29747 1.23306 0.95323 0.81484 1.02439 1.21935 0.98170 0.92739 0.85641 0.90247 1.22863 0.97703 0.94180 0.97111 1.23072 0.96878 0.98789 0.98746 1.22690 0.99763 0.96758 0.97720 1.23119 0.97899 0.99748 0.96104 0.96410 0.91048 0.94112 0.92594 0.89642 0.88821 0.93339 0.84796 0.92652 0.85404 0.89350 0.89972 0.94735 0.91484 0.89888 0.90952 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.32 8.86 71.98 0.64 -4.68 16 2 C 0.03 1.38 1.89 -12.29 -0.02 1.36 16 3 H 0.04 2.05 6.14 -2.39 -0.01 2.04 16 4 C -0.52 -30.03 8.34 25.60 0.21 -29.82 16 5 H 0.04 2.75 6.98 -2.91 -0.02 2.73 16 6 C 0.02 1.21 5.30 84.65 0.45 1.66 16 7 N -0.91 -50.80 11.39 21.45 0.24 -50.55 16 8 Si 0.95 44.84 29.54 68.60 2.03 46.86 16 9 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 C 0.52 23.64 6.66 87.66 0.58 24.23 16 13 O -0.56 -27.75 9.87 -3.04 -0.03 -27.78 16 14 N -0.62 -22.06 3.01 -792.73 -2.39 -24.45 16 15 C 0.07 1.99 6.36 86.50 0.55 2.54 16 16 C 0.05 1.24 7.00 72.22 0.51 1.75 16 17 O -0.39 -9.85 10.74 -148.98 -1.60 -11.45 16 18 C 0.05 1.26 5.50 72.08 0.40 1.65 16 19 C 0.12 3.51 3.21 44.96 0.14 3.65 16 20 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 21 C -0.10 -3.17 2.49 -10.27 -0.03 -3.20 16 22 C -0.14 -4.46 6.57 31.12 0.20 -4.25 16 23 C -0.13 -3.34 8.08 31.12 0.25 -3.09 16 24 C -0.13 -2.98 7.45 31.12 0.23 -2.75 16 25 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 3.64 6.25 -2.39 -0.01 3.63 16 27 H 0.04 1.63 7.96 -2.39 -0.02 1.61 16 28 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 29 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.09 3.01 5.51 -2.39 -0.01 2.99 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.06 1.45 5.60 -2.39 -0.01 1.44 16 34 H 0.13 2.36 6.66 -2.38 -0.02 2.34 16 35 H 0.09 3.55 5.95 -4.11 -0.02 3.53 16 36 H 0.08 2.41 5.45 -2.39 -0.01 2.40 16 37 H 0.03 1.42 6.89 -2.39 -0.02 1.40 16 38 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.10 1.77 6.30 -2.39 -0.02 1.76 16 Total: -1.00 -64.91 306.71 3.38 -61.53 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 1.01 Total: 16.80 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 4.12 Total: -10.96 kcal Atomic # 7 Polarization: -72.86 SS G_CDS: -2.14 Total: -75.00 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -1.63 Total: -39.23 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -64.91 3.38 -61.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597804602.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.581 kcal (2) G-P(sol) polarization free energy of solvation -64.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds