Wall clock time and date at job start Mon Mar 30 2020 05:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46856 * 2 1 4 4 C 1.50697 * 109.46802 * 119.99697 * 2 1 3 5 5 H 1.07998 * 120.00305 * 120.00192 * 4 2 1 6 6 C 1.37878 * 120.00080 * 300.00309 * 4 2 1 7 7 N 1.31521 * 120.00236 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47297 * 89.99869 * 8 6 4 10 10 H 1.48500 * 109.46989 * 209.99911 * 8 6 4 11 11 H 1.48499 * 109.46973 * 329.99795 * 8 6 4 12 12 C 1.50698 * 109.47388 * 239.99774 * 2 1 3 13 13 O 1.21281 * 119.99613 * 247.78562 * 12 2 1 14 14 N 1.34777 * 120.00022 * 67.78094 * 12 2 1 15 15 C 1.47130 * 121.04433 * 3.21100 * 14 12 2 16 16 C 1.53686 * 108.45911 * 127.76803 * 15 14 12 17 17 H 1.09005 * 109.65102 * 294.32420 * 16 15 14 18 18 C 1.52998 * 109.44167 * 174.20810 * 16 15 14 19 19 O 1.43090 * 109.26371 * 54.32679 * 16 15 14 20 20 C 1.42586 * 113.96220 * 299.74820 * 19 16 15 21 21 C 1.53345 * 113.71513 * 189.35169 * 20 19 16 22 22 C 1.53864 * 86.96842 * 89.60636 * 21 20 19 23 23 C 1.53377 * 113.66484 * 287.42747 * 20 19 16 24 24 C 1.47327 * 121.04450 * 183.49074 * 14 12 2 25 25 H 1.08998 * 109.47426 * 307.35868 * 1 2 3 26 26 H 1.09003 * 109.47092 * 67.35824 * 1 2 3 27 27 H 1.09002 * 109.47651 * 187.35188 * 1 2 3 28 28 H 0.96995 * 120.00281 * 180.02562 * 7 6 4 29 29 H 1.08993 * 109.59185 * 247.58896 * 15 14 12 30 30 H 1.09000 * 109.59588 * 8.05382 * 15 14 12 31 31 H 1.08997 * 109.47016 * 300.25772 * 18 16 15 32 32 H 1.09001 * 109.47185 * 60.25783 * 18 16 15 33 33 H 1.09007 * 109.47057 * 180.26108 * 18 16 15 34 34 H 1.08992 * 113.63419 * 204.12901 * 21 20 19 35 35 H 1.09003 * 113.62905 * 335.09066 * 21 20 19 36 36 H 1.08995 * 113.60184 * 270.56136 * 22 21 20 37 37 H 1.08996 * 113.67478 * 139.70683 * 22 21 20 38 38 H 1.09003 * 113.63483 * 24.86782 * 23 20 19 39 39 H 1.09009 * 113.63123 * 155.74192 * 23 20 19 40 40 H 1.08999 * 109.74479 * 348.15289 * 24 14 12 41 41 H 1.08996 * 109.74491 * 108.82900 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6531 -1.5884 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 0.9433 0.8304 2.6034 8 14 2.3222 -1.1194 4.0081 9 1 3.6302 -0.5438 4.4121 10 1 1.3441 -0.9488 5.1123 11 1 2.4878 -2.5652 3.7124 12 6 2.0324 -0.7104 -1.2304 13 8 2.6089 -1.7722 -1.1246 14 7 1.8409 -0.1660 -2.4483 15 6 1.2070 1.1533 -2.5986 16 6 2.1152 2.0329 -3.4723 17 1 3.0524 2.2248 -2.9498 18 6 1.4118 3.3601 -3.7631 19 8 2.3852 1.3558 -4.7036 20 6 3.0450 0.1020 -4.5425 21 6 3.5338 -0.5115 -5.8601 22 6 4.8478 0.2570 -5.6358 23 6 4.5177 0.2295 -4.1334 24 6 2.2542 -0.8758 -3.6714 25 1 -0.3634 0.6236 0.8168 26 1 -0.3633 0.3956 -0.9485 27 1 -0.3634 -1.0192 0.1315 28 1 0.7092 1.1620 3.4843 29 1 0.2341 1.0390 -3.0764 30 1 1.0836 1.6133 -1.6181 31 1 0.4744 3.1677 -4.2850 32 1 1.2062 3.8755 -2.8250 33 1 2.0536 3.9825 -4.3867 34 1 3.6491 -1.5946 -5.8215 35 1 2.9743 -0.1749 -6.7329 36 1 4.8460 1.2590 -6.0648 37 1 5.7388 -0.3137 -5.8975 38 1 4.7490 1.1617 -3.6180 39 1 4.9049 -0.6481 -3.6155 40 1 2.8831 -1.7265 -3.4087 41 1 1.3732 -1.2220 -4.2117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597816681.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:08 Heat of formation + Delta-G solvation = -59.253363 kcal Electronic energy + Delta-G solvation = -21833.715887 eV Core-core repulsion = 18714.442789 eV Total energy + Delta-G solvation = -3119.273098 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.60367 -38.48097 -36.52637 -34.18788 -33.78619 -31.68106 -30.58656 -27.83826 -25.96102 -25.83119 -25.15334 -23.37932 -22.00688 -21.12539 -19.14045 -18.53731 -16.53865 -16.50984 -15.94837 -15.60783 -15.39716 -14.60241 -14.46671 -14.44825 -14.02979 -13.26093 -13.21256 -12.92616 -12.45552 -12.42119 -12.19473 -12.09939 -11.71656 -11.41116 -11.37439 -11.01189 -10.97040 -10.82273 -10.74902 -10.73254 -10.54363 -10.26873 -10.15301 -9.94768 -9.62394 -8.97704 -8.60218 -8.34212 -7.96454 -6.04924 -4.07135 3.32739 3.38411 3.43087 3.49634 3.59350 3.65915 4.45507 4.53069 4.63961 4.77504 4.85122 4.97853 5.16546 5.23952 5.29173 5.32571 5.53024 5.62119 5.65540 5.73470 5.80897 5.84027 5.85458 5.89105 5.98883 6.06227 6.10897 6.22888 6.26635 6.29336 6.62504 6.79692 6.89395 7.02501 7.33262 7.43858 7.72025 7.95940 8.05751 8.35924 9.00860 9.17795 9.58114 11.03380 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026441 B = 0.005625 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.698986 B = 4976.608758 C = 5498.927398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.032 3.968 3 H 0.049 0.951 4 C -0.501 4.501 5 H 0.073 0.927 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.524 3.476 13 O -0.544 6.544 14 N -0.629 5.629 15 C 0.084 3.916 16 C 0.071 3.929 17 H 0.064 0.936 18 C -0.142 4.142 19 O -0.355 6.355 20 C 0.082 3.918 21 C -0.121 4.121 22 C -0.133 4.133 23 C -0.159 4.159 24 C 0.098 3.902 25 H 0.089 0.911 26 H 0.015 0.985 27 H 0.034 0.966 28 H 0.261 0.739 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.883 3.908 -15.240 15.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.011 3.989 3 H 0.067 0.933 4 C -0.540 4.540 5 H 0.091 0.909 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.316 3.684 13 O -0.420 6.420 14 N -0.365 5.365 15 C -0.040 4.040 16 C 0.013 3.987 17 H 0.082 0.918 18 C -0.199 4.199 19 O -0.275 6.275 20 C 0.042 3.958 21 C -0.159 4.159 22 C -0.171 4.171 23 C -0.197 4.197 24 C -0.025 4.025 25 H 0.108 0.892 26 H 0.034 0.966 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.062 3.494 -15.172 15.705 hybrid contribution 0.257 -0.419 1.078 1.185 sum 2.320 3.075 -14.094 14.611 Atomic orbital electron populations 1.21798 0.96274 1.01230 0.99692 1.18848 0.94227 0.96566 0.89242 0.93340 1.21131 1.31112 1.12755 0.88988 0.90888 1.24940 0.95056 0.95064 0.99073 1.69881 1.37093 1.23074 1.23555 0.86457 0.78436 0.80296 0.82070 1.20677 1.21260 1.19744 1.22057 0.76840 0.85461 0.84023 1.90515 1.41978 1.23511 1.85960 1.48432 1.62744 1.19400 1.05895 1.22516 0.95606 0.83821 1.02064 1.22625 0.98228 0.92323 0.85542 0.91775 1.21720 1.00841 0.94635 1.02715 1.87838 1.78112 1.31955 1.29565 1.22550 0.91350 0.85358 0.96585 1.22897 0.96693 0.99966 0.96302 1.22783 0.97207 1.00726 0.96365 1.23437 0.96301 1.03157 0.96792 1.21991 0.99136 0.95630 0.85778 0.89222 0.96575 0.94675 0.92966 0.91372 0.87505 0.91701 0.90440 0.91818 0.88702 0.90465 0.90013 0.91419 0.91158 0.89125 0.88459 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.47 37.16 0.31 -2.75 16 2 C 0.03 0.80 1.79 -92.93 -0.17 0.64 16 3 H 0.05 1.24 7.13 -51.93 -0.37 0.87 16 4 C -0.50 -14.28 8.36 -34.44 -0.29 -14.57 16 5 H 0.07 2.20 6.78 -52.49 -0.36 1.85 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -24.99 11.41 55.43 0.63 -24.35 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.52 12.27 7.00 -10.99 -0.08 12.19 16 13 O -0.54 -14.38 14.98 5.56 0.08 -14.30 16 14 N -0.63 -11.77 3.02 -172.11 -0.52 -12.29 16 15 C 0.08 1.32 4.39 -3.34 -0.01 1.31 16 16 C 0.07 0.98 3.31 -26.38 -0.09 0.90 16 17 H 0.06 0.94 7.11 -51.93 -0.37 0.57 16 18 C -0.14 -1.54 9.57 37.16 0.36 -1.18 16 19 O -0.36 -5.11 10.08 -35.23 -0.36 -5.46 16 20 C 0.08 1.15 1.12 -90.26 -0.10 1.04 16 21 C -0.12 -1.34 7.47 -26.10 -0.20 -1.53 16 22 C -0.13 -1.45 8.03 -25.84 -0.21 -1.66 16 23 C -0.16 -2.15 7.23 -26.09 -0.19 -2.34 16 24 C 0.10 1.59 5.78 -3.60 -0.02 1.57 16 25 H 0.09 2.23 6.31 -51.93 -0.33 1.91 16 26 H 0.02 0.31 6.06 -51.93 -0.31 -0.01 16 27 H 0.03 0.84 8.13 -51.93 -0.42 0.42 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 30 H 0.11 1.79 5.18 -51.93 -0.27 1.52 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.00 7.18 -51.93 -0.37 0.62 16 39 H 0.09 1.29 7.95 -51.92 -0.41 0.88 16 40 H 0.10 1.68 6.90 -51.93 -0.36 1.33 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 318.41 15.07 4.80 4.80 Total: -1.00 -30.94 318.41 -7.66 -38.60 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.51 Total: 1.02 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -0.77 Total: -4.83 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.11 Total: -36.64 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.27 Total: -19.76 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.94 -7.66 -38.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597816681.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.653 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds